Basic Information

Insect: Aporophyla nigra
Gene Symbol: -
Assembly: GCA_947507805.1
Location: OX382303.1:7791690-7797280[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.033 2.8 9.2 0.1 5 23 352 370 351 370 0.96

2 12 0.0082 0.7 11.1 0.3 3 23 378 398 376 398 0.94

3 12 1 86 4.5 0.3 2 23 406 427 405 427 0.91

4 12 2.7e-07 2.3e-05 25.2 1.0 2 23 433 454 433 454 0.98

5 12 0.0042 0.36 12.0 4.1 1 23 460 482 460 482 0.98

6 12 6.8e-05 0.0058 17.6 0.8 1 20 486 505 486 507 0.94

7 12 6.1e-05 0.0052 17.8 0.2 1 23 540 563 540 563 0.96

8 12 0.00085 0.072 14.2 0.1 3 23 572 592 571 592 0.99

9 12 0.00082 0.07 14.2 0.4 1 23 603 625 603 625 0.98

10 12 7.3e-05 0.0061 17.6 4.5 1 23 631 653 631 653 0.98

11 12 0.00052 0.044 14.9 0.2 3 23 661 681 659 681 0.98

12 12 5.8e-06 0.00049 21.0 0.7 1 23 687 710 687 710 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.033	2.8	9.2	0.1	5	23	352	370	351	370	0.96
2	12	0.0082	0.7	11.1	0.3	3	23	378	398	376	398	0.94
3	12	1	86	4.5	0.3	2	23	406	427	405	427	0.91
4	12	2.7e-07	2.3e-05	25.2	1.0	2	23	433	454	433	454	0.98
5	12	0.0042	0.36	12.0	4.1	1	23	460	482	460	482	0.98
6	12	6.8e-05	0.0058	17.6	0.8	1	20	486	505	486	507	0.94
7	12	6.1e-05	0.0052	17.8	0.2	1	23	540	563	540	563	0.96
8	12	0.00085	0.072	14.2	0.1	3	23	572	592	571	592	0.99
9	12	0.00082	0.07	14.2	0.4	1	23	603	625	603	625	0.98
10	12	7.3e-05	0.0061	17.6	4.5	1	23	631	653	631	653	0.98
11	12	0.00052	0.044	14.9	0.2	3	23	661	681	659	681	0.98
12	12	5.8e-06	0.00049	21.0	0.7	1	23	687	710	687	710	0.96

Sequence Information

Coding Sequence: ATGGATACGTGGACCGATCTCTGCCGTTGTTGTTTGTCTGCCAATTCCGAAGTGTCACTCCTAGATTCGGAACGGAATGTACCTAAGAAGTTTCATGAAATAACTACAATCGAGGTCAAGGAAGACGATGGTCTACCACAGAAGTTGTGCGCAGATTGTTATGAAATCATGAACTCCGCGTACCAGTTCCGTAAGCAGTGCATCAAAATGGACAGTGAACTACGTCTACAGCTCAAAACTGTATTAGATATATCTAAAAGTGATAATCTTTCTAAATATGACGCTAGTGGTGATGACGATGATATTGGGAACGATCCCATGAAGCAACTTGAGGCTATCATTAAACAAGAGCCTACTGATAGCGATGATGATTACTATTACGTTTTAGTTATTGATGATCCCAAAGATAAGGATAAAGAAGAAAACAAAGAAGTGAAAAACATTAAACAAGAAGAATTTGACGATGTTGTGGCAAACGCAGAAACTACTGCTACAACTACTACTTACACACAGGAATCAAGTCAAAACTCTCAGAGTCAGTTTGAAGACTCCATTGAATCATTCCTCATGTCCAACACGAAGGTCTCAGCTAACGTACCAGCCACTATTCTAGAAAATGAGGAAGTGAGCCAGGAAAATGAGGATTTAGACGAACCCATGAACATAGATGAAACCCAGGATAGTATGTCTAATGAACAACATTTTGCTGAAATGGAAGAGTCACAAGACGATGAAAACATTGAAACAATTACTTCTAATGCCATAAGTGAGCTGCCTAGTTCTAAAAACTTCATCAAAATACTAACTACCACAGACTCTGATGGCACTATCTTGTTGAAAAGTAACGACAGAATCCAATACTTGACTGATTCTCAACTAGTCGCAAATGAAGATGAAGATGGTGATGCATTGTCCCAAGAAGTGATATTCTGTGAAGGTGATGATTCCCAGTTCCAAATTCTGAAATATGATGGTTCAGAATTGGTTATAGAATACGCAGATGATAGCCAAATAGCTACAGTACTGCAACAAGAAGATGGCACATTCTTATGTGATTGTGGAGAGCAGTTCGATGACTTGGCCGATTATGAGAAGCATCAGTACAAACACAATCCTGCTGGAGAACATTTGTGTAACCTATGCGGTAAAGGCTTTGAGTCATCAGAGATTCTTACTGGACACATGTTACTTCATAGTAGTACAGGACTCTTGATCACTTGTCCGTTTTGCAACCAGCTTATCAGACGAAATGCCTTAACACAGCACATCAAATATGGTCACAACAACATCAAACCTCGCTGCAATATTTGTTTCAAAACATTTGCCAACCCAAACAACTTAAAACGTCACATGATGATTCACAGCGGCATCAGAGAGTTTGAATGTGACGTCTGTTACAAGAGATTCCACCAGAAAATCACAATGCAAACACATAGGTTAACACATATGAACCCATTTACATGCAACCAGTGTGACCAATCATTTGACAATAAGACTGATTTGAACAATCACAAAGAATCCGATGAATGCTCAAAATCTAAAGTCACAAAGGTTAAAGAAGAATTAATGAAGACTGTTAAACAAGAAATAACTACAAATCATGGGAAACTGCTTGGTTATGCTTGCTCACTATGCAAGAAAATGTTTTCAGTGGAGTCCGCGTTAGAGCAACATATTGAGAGCACACACATTGTTGATCCAACAGAACTGTTATGCTCGGAATGTGGTGAAGTGTTACCTTCTAAGAAAGATATGCAAACGCACATACTGACTCACAAGAACATGAAAGTGAAGAACATAAAAAGGTTTGAATGCACTATTTGTGCAAAAGGGTGTTCGAGCCAGGCAATGCTTTTGATGCATGAGCGAGTACATACAAATGAAAGGCCTTTCCCATGCCAACTGTGTTCTTTACGTTTTAAAACGAAAACACATTTACGTACACATCAGCTTACTCATACGCGGGAAAAGAAGTTTGGATGCTCAGTTTGTTTGAAGTTCTTCGCACTCAAAGGAAATTTGGTTGTTCATCTCAGAACACATACCGGAGAGCGGCCTTATGTTTGTTCAATATGCGGAGAAGCTTTCATAGACTCGAAATATTTAAAGAAACACAAACTAAAGAAACATTCTATAGATAATGTGCCATGGAATCAGTACTGA
Protein Sequence: MDTWTDLCRCCLSANSEVSLLDSERNVPKKFHEITTIEVKEDDGLPQKLCADCYEIMNSAYQFRKQCIKMDSELRLQLKTVLDISKSDNLSKYDASGDDDDIGNDPMKQLEAIIKQEPTDSDDDYYYVLVIDDPKDKDKEENKEVKNIKQEEFDDVVANAETTATTTTYTQESSQNSQSQFEDSIESFLMSNTKVSANVPATILENEEVSQENEDLDEPMNIDETQDSMSNEQHFAEMEESQDDENIETITSNAISELPSSKNFIKILTTTDSDGTILLKSNDRIQYLTDSQLVANEDEDGDALSQEVIFCEGDDSQFQILKYDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFDDLADYEKHQYKHNPAGEHLCNLCGKGFESSEILTGHMLLHSSTGLLITCPFCNQLIRRNALTQHIKYGHNNIKPRCNICFKTFANPNNLKRHMMIHSGIREFECDVCYKRFHQKITMQTHRLTHMNPFTCNQCDQSFDNKTDLNNHKESDECSKSKVTKVKEELMKTVKQEITTNHGKLLGYACSLCKKMFSVESALEQHIESTHIVDPTELLCSECGEVLPSKKDMQTHILTHKNMKVKNIKRFECTICAKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCLKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHSIDNVPWNQY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00039097;
90% Identity: iTF_00037092;
80% Identity: -