Anig015632.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382318.1:12797214-12814798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 9.1 7.6 1.1 1 23 266 289 266 289 0.96 2 13 1.4e-05 0.0012 19.8 1.7 1 23 293 315 293 315 0.98 3 13 0.00023 0.019 16.0 0.6 1 23 320 342 320 342 0.98 4 13 2.7e-05 0.0023 18.9 4.9 1 23 348 370 348 370 0.99 5 13 8.6e-08 7.3e-06 26.8 0.1 3 23 379 400 378 400 0.98 6 13 5.7e-06 0.00048 21.0 4.2 1 23 406 428 406 428 0.98 7 13 9.5e-05 0.0081 17.2 1.2 1 23 435 457 435 457 0.98 8 13 0.33 28 6.0 0.2 1 23 461 484 461 484 0.93 9 13 4.4e-06 0.00038 21.4 0.1 2 23 492 513 491 513 0.95 10 13 0.00025 0.021 15.9 0.6 1 23 519 542 519 542 0.96 11 13 0.66 56 5.1 0.6 2 12 554 564 554 572 0.75 12 13 1.3e-05 0.0011 19.9 0.9 2 23 578 600 577 600 0.92 13 13 0.0051 0.43 11.8 0.9 3 23 607 628 605 628 0.97
Sequence Information
- Coding Sequence
- ATGTCGGAAATATGGAATCTTAGTACATTATGTCGTTGTTGTCACGCCGATGGCCACTTCAAGAGTCTCAATTTATCGTATCAAGGTAAAAATGATGTCGAAATATACGAGAACATGTTACGTGAAACTTTGGGGATATTTATTACGAATGAACCTGTGCCGCAAGACGCGAGCTACACAATATGTGACGACTGTATCTTAAAGCTGAGAGATGCAGCTGAGTTCAAGAACCAAGTGCTTATGTGTGAACAGAAGTTCAAGGTGTACTGTAATAATGAACAATTAGTAACATGTGATATAAAGTTAGAAGGAGGAAATGATGAAGATGACTTTTATAATGATGATGTTACAACAGATGTTGAAATAGATCAGAAAGTTACACTGGATCTAAAAAAAGATGATGTTTCAATAGATGTTGAAATAGATGAGAAACATACACTGGATGTTAAAAAAGAAAATGAACCAAATACTGAGATCGTAAATGAAGTAAAGGATGCAAGCGAAAATGAAACAAAGCCAGAAATACCAAAGACTAATTTAAAGAAGAAAATAAATATAAATAAGCGGAAAATAACGAAAAATAAGGAACAAAAAAATCAACCAAGTTCTGACACCGTAAGTGAAGAAAAAGTTGCAAGTGAAAATGTAATAAAGCCAGAAATACCAAAGAAAAATTTAAAGAAGAAAATAAATATTAATAGACAGAAATTGACGAAAAATAAGGAACAAAGTAAAAGACGCAAAATCCTCGACCGTTCCTTAATTGTTAAAGTTGATACAGACATAGGCAACGAATTCTCCTGCAAAGATTGTGGGGGACTGTACCAAACAGAGAAAGAAATCACCAAACACATTCACAAAGCACATGCAACCTTATTCAAGTGTGAATACTGCCCAAAACAACTAAAAACATTCGGCAATTTAAAAAACCATCTAAGACTTCACACAGGAAAAGAATTCACCTGTAATTTTTGCCCGAAAAATTTCGCTTCGATAAACGCTTTGAAAACCCATGAAAATTCTCATACTCAGGAAAAAATCTACAAATGCCATCTGTGTGATAAAGAATATAAATACAGACAAACTCTTAATAAACATTTAAAAGTACATGCGGGTACTAATAAAAAAATATTGTGTGATATCTGTGGTTGGTCTTTTAACGATCAATCAAATTTAAACGCTCACATCAGATCGGTCCATGAGAAACTACGTCCCTTCAATTGTAAAATATGTCAAAAAACGTACTCCAACCAAAGACATTTGAGAGACCATTTAAAAGTACATAACGGTGACGAAAAAGTTTTCAAATGTGACATTTGTGACAAGAGACTGTCATCTCCAAAGACAATGAAGATCCATAGACTAAAACATGAAAATAAATTCTTGTGCAGTTTCTGTCCTACGATTTTTGATGATTCTCTTTCAAAACTTGAGCATATTAAGTCTGTTCATAATAAAGTGCTTCCCTGGATACCATGTCCTCTATGTGGGAAGGTATTTTCGGGTAAATTTTCTCTAAACCGTCATATAGATGAACATAATGGCATAAAAAAGTTCTCTTGCGATATCTGTGGGTTAAAATTCACACAGAAAGCTATTTTAAATAGACATGTCTCTCGAAAACATAATTCTGATACAAATATTGATATTGGTAAGGCGAAGTGTGATATCTGTAAGCGTAGTTATAAGAATATTGTTACTCATATGGAATCGCACAAAAATAGGTTGAAGGAATGTGATTTGTGTGGGAAAACATACAGAGATTCTAGTGCTTTAAACAGGCACAAGTCTTTGAAACATTTTGGTAAAAGTTTCGGCTGTAGTATCTGCGAGAAGAAATATTTGAAGAAATCTACCCTAAATGCACATTTAAAGAAAGTACATATGATTAAAATTGAAAAAGATTGTGAGGAGGGTAGTTGA
- Protein Sequence
- MSEIWNLSTLCRCCHADGHFKSLNLSYQGKNDVEIYENMLRETLGIFITNEPVPQDASYTICDDCILKLRDAAEFKNQVLMCEQKFKVYCNNEQLVTCDIKLEGGNDEDDFYNDDVTTDVEIDQKVTLDLKKDDVSIDVEIDEKHTLDVKKENEPNTEIVNEVKDASENETKPEIPKTNLKKKININKRKITKNKEQKNQPSSDTVSEEKVASENVIKPEIPKKNLKKKININRQKLTKNKEQSKRRKILDRSLIVKVDTDIGNEFSCKDCGGLYQTEKEITKHIHKAHATLFKCEYCPKQLKTFGNLKNHLRLHTGKEFTCNFCPKNFASINALKTHENSHTQEKIYKCHLCDKEYKYRQTLNKHLKVHAGTNKKILCDICGWSFNDQSNLNAHIRSVHEKLRPFNCKICQKTYSNQRHLRDHLKVHNGDEKVFKCDICDKRLSSPKTMKIHRLKHENKFLCSFCPTIFDDSLSKLEHIKSVHNKVLPWIPCPLCGKVFSGKFSLNRHIDEHNGIKKFSCDICGLKFTQKAILNRHVSRKHNSDTNIDIGKAKCDICKRSYKNIVTHMESHKNRLKECDLCGKTYRDSSALNRHKSLKHFGKSFGCSICEKKYLKKSTLNAHLKKVHMIKIEKDCEEGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -