Anig014941.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382305.1:13924621-13941738[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00061 0.052 14.6 0.2 2 23 142 163 141 163 0.93 2 15 0.00089 0.075 14.1 2.4 1 23 169 191 169 191 0.96 3 15 0.0001 0.0086 17.1 0.3 1 23 283 305 283 305 0.98 4 15 0.00093 0.079 14.1 0.0 3 23 427 448 425 448 0.90 5 15 0.00029 0.025 15.6 0.1 1 23 463 485 463 485 0.97 6 15 0.0008 0.068 14.3 0.5 2 23 528 549 527 549 0.96 7 15 0.0008 0.068 14.3 0.5 2 23 592 613 591 613 0.96 8 15 0.0008 0.068 14.3 0.5 2 23 656 677 655 677 0.96 9 15 0.0008 0.068 14.3 0.5 2 23 720 741 719 741 0.96 10 15 0.0008 0.068 14.3 0.5 2 23 784 805 783 805 0.96 11 15 2.1e-05 0.0018 19.2 0.2 1 23 837 859 837 859 0.98 12 15 0.00095 0.081 14.0 0.2 1 23 865 887 865 887 0.97 13 15 0.00054 0.046 14.8 0.3 1 23 893 915 893 916 0.95 14 15 0.014 1.2 10.3 1.1 1 23 929 951 929 951 0.96 15 15 0.044 3.7 8.8 0.0 1 20 1095 1114 1095 1117 0.93
Sequence Information
- Coding Sequence
- ATGGATGGGGAAGCCGAAGACTTCAACCTTCAATGGGAGGAGGAAGTTGAAGTGAAGCACAGTCCAGGTGTTGTTGAGACAGAGGAAGAAATAACAGGTCTTGTTAATGTGCAGCACACAGAATATTCCAACATGACAGCTGAAGAGATGATGAGCACGGACCAAATGGCTGCAGAGAACTTAATGTTTTTATCTCAAGATGTAGTCAGCTATACAGAGACAGCTGAACTAGCAGATGATCCTAGCGTGGAGTGTGTCACTGAAGAGGTCATTACAGACGATTGGGTGACTCCTGGTGGGCAGGAAAGAGTTGAAGTTCCTATGGATCATCTTAATCATGCTGATGTGGTCCCGAAACAAGAAAATGACCTTGATGTTCCATTACCAACAGATCAAGATGAATACACAGCGATGCGTCCTTGGCCCTGTGACTTTTGTTCGCGGCGGTTCCGTAAGAAGGCCGCTCTAATGAACCATATGGTAGCTCATCAGAACGACCGGCCGCATGCGTGTAATCTGTGTGGCGTGCGATACGTACGCAAGTGCGACCTCATGAACCATCTCAAGGTTCACGCCTTTGTGCCTGACAACCCCGATTCTATAGATTATGAGGATGTTTTAGACAATAACCAAATTGTAAAACCAAAGAAGAAACGAGGACGACGGAAAAAGAATCCTGAGGCAGTCGAGGAGAACGGCATGTGGGAGAACATGACGTCAGCGCGTACGCAGCAGTGGTCGCGGCGCGCGCGCTCGCCGGCGCGCCCCCCGCCCACGCCGCCCTCGCCCCCGCCTGCGCCCCCCGCGCCCTCGCCCCCGCCGGCCCCCAGCGACCCCTCGCGCCCCTTCGTCTGCAGACATTGCGGCGTCGGCTTCGCAAGGGAGAAGGCTTTGCAGTCACATGCTCGGGTGCACGGCGGCGACTCGCCAGTGGAGTGTGGCTCGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCGGCGCACGCGGCCACGCGCCACCCGCACCTGCCGCCGCGCGACCAGCCGCCCGACCCGCCCTACGAAGACTCCGACTCGGTGGAGTGCGGCTCGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCGGCGCACGCGGCCACGCGCCACCCGCACCTGCCGCCGCGCGACCAGCCGCCCGACCCGCCCTACGAAGACTCCGACTCGGGAGATGACATGGAGTTCCGCCTATCCCCGCTGTCACACGGGGTGTCTGACCGTGCGGTGTACGACACGATGCGCGGGCCCGAGCTGTTCTGCCAGGACTGCGGCGTCGCCTTCCAGCGAGCAGACCTGCTGCGAAGACACGTGGCTGCAGCACATAGCTACAAGCGACACGACAGTTCCAGTAGCACATGGGCGGAACACACGTGCGATGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGGTAACAGTACGCGCGGCACGACAGTTGGAACACACTGCCACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGGTAACAGTACGCGCGGCACGACAGTTGGAACACACTGCCACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGGTAACAGTACGCGCGGCACGACAGTTGGAACACACTGCCACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGGTAACAGTACGCGCGGCACGACAGTTGGAACACACTGCCACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGGTAACAGTACGCGCGGCACGACAGTTGGAACACACTGCCACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTACTGGCGCACGCCGAGACACACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGGTTAAAAAGAATGGCTAGAGGTCGGAATAATACGTCATCATCGAATAATTCACGGCAATTCCCTTGTCGGGTTTGTGGCAAAGTGTTTGGTTCGCGGAGCTCTCAACAGATTCACATCCGAATCCACACTGGCGAGCGGCCGTACGCGTGTCGGTTTTGCTGGAAAGCGTTTGCGGACGGCGGCACGCTACGGAAACATGAAAGAATACATACAGGCGAGAAACCGTACGCATGCGCGGTATGTCCTCGCGCGTTCAACCAGCGCGTTGTTCTACGTGAGCATGTCCGCTCGCACCACTCCGCTCCCGACCGGCGCGCTAACGGTGGCCCCGCCTACTGTTGTGTAGTGTGCGGGCGCACGCTGCACTCGAGCGCGGAGCTGGTGCAGCACCTCATACAGCACTGTGACGCCAACACGGCGCTCAAGAGACAACCCCAGACGGGGCCACGAAAGTACAAAAGACGACGAAAACTGAAGCAAGAGCGGTCTCCGGCGACGCCGCGCGATTGGGAGCGCACCTCCCCGTCGCCCCCGCCCGCCTCGCGCTCACCCTCGCCCGCCTCGCGCGTCTCCGACACGCCGCTGCTGTCGCCCGCCTCGCCGCCCTCGCCCGCATCGCCTGCATCGCCCGCGTCGCCCGTGAGGCGCCGGCGCCGCCGCGCGCCGTCGCCCGCGCCGCGGCCGCGCATGATCCACACGGAGGAGCGGCGCGCCGGGCCGGGCGCACGCCGGCGCCGCGCGCCGCCCGCGTCGCCGCCGCCCCCGCGCGCCACGCGGCGCCGCGCGCGCGCCGTGGCCGCGCCGGAGGCGGCGCCGGACGCGGCGGGCCCGTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGCGACGCGCTGCTGCTGCACGTGCCGGTGCACATTTGA
- Protein Sequence
- MDGEAEDFNLQWEEEVEVKHSPGVVETEEEITGLVNVQHTEYSNMTAEEMMSTDQMAAENLMFLSQDVVSYTETAELADDPSVECVTEEVITDDWVTPGGQERVEVPMDHLNHADVVPKQENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNPDSIDYEDVLDNNQIVKPKKKRGRRKKNPEAVEENGMWENMTSARTQQWSRRARSPARPPPTPPSPPPAPPAPSPPPAPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGSCGELCWSREALAAHAATRHPHLPPRDQPPDPPYEDSDSVECGSCGELCWSREALAAHAATRHPHLPPRDQPPDPPYEDSDSGDDMEFRLSPLSHGVSDRAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRAPHAQPSYWRTPRHTPSDTARRTRSPGNSTRGTTVGTHCHVCGEGFTDALQLLAHAETHAERHRAPHAQPSYWRTPRHTPSDTARRTRSPGNSTRGTTVGTHCHVCGEGFTDALQLLAHAETHAERHRAPHAQPSYWRTPRHTPSDTARRTRSPGNSTRGTTVGTHCHVCGEGFTDALQLLAHAETHAERHRAPHAQPSYWRTPRHTPSDTARRTRSPGNSTRGTTVGTHCHVCGEGFTDALQLLAHAETHAERHRAPHAQPSYWRTPRHTPSDTARRTRSPGNSTRGTTVGTHCHVCGEGFTDALQLLAHAETHAERHRAPHAQPRLKRMARGRNNTSSSNNSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKQERSPATPRDWERTSPSPPPASRSPSPASRVSDTPLLSPASPPSPASPASPASPVRRRRRRAPSPAPRPRMIHTEERRAGPGARRRRAPPASPPPPRATRRRARAVAAPEAAPDAAGPYKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -