Anig024317.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382319.1:3300341-3302674[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0001 0.0085 17.1 5.3 1 23 8 31 8 31 0.95 2 22 0.001 0.087 13.9 0.6 2 23 37 59 36 59 0.94 3 22 1.2e-05 0.001 20.0 0.4 2 23 68 90 68 90 0.97 4 22 1.6e-05 0.0014 19.6 2.9 2 23 99 121 99 121 0.96 5 22 2.6e-05 0.0022 19.0 1.3 2 23 129 151 129 151 0.95 6 22 0.00013 0.011 16.7 3.5 2 23 160 182 159 182 0.94 7 22 5.1e-07 4.3e-05 24.3 1.1 1 23 188 211 188 211 0.98 8 22 4.9 4.2e+02 2.4 0.8 2 23 219 240 218 241 0.92 9 22 0.027 2.3 9.5 1.4 1 23 252 275 252 275 0.90 10 22 0.00055 0.046 14.8 0.4 1 23 300 323 300 323 0.97 11 22 5.6 4.7e+02 2.2 1.0 2 21 331 350 330 351 0.90 12 22 0.014 1.2 10.3 3.2 2 23 360 382 360 382 0.96 13 22 0.00056 0.048 14.8 6.1 1 23 404 427 404 427 0.97 14 22 3e-06 0.00025 21.9 0.3 2 23 434 456 433 456 0.96 15 22 3.5e-05 0.003 18.6 2.1 2 23 463 485 462 485 0.94 16 22 0.007 0.59 11.3 2.2 1 23 491 514 491 514 0.97 17 22 0.18 15 6.9 7.1 2 23 522 544 522 544 0.95 18 22 4.5e-05 0.0038 18.2 0.9 1 23 551 574 551 574 0.98 19 22 0.015 1.3 10.3 1.4 1 23 581 604 581 604 0.89 20 22 0.016 1.4 10.2 2.7 3 23 619 640 618 640 0.91 21 22 1.8 1.6e+02 3.7 0.1 2 17 661 676 660 677 0.89 22 22 8.5 7.2e+02 1.6 0.5 1 12 690 701 690 703 0.78
Sequence Information
- Coding Sequence
- ATGTATGAAAATCATTTAGATTTCGTTTGTGACTATTGCTCTCGGCCTTTTACAAGAAAATGCAACTTACAGACTCATATAGAGAACTGCCATATCAATTCTTCTTGCCACTGCAATATCTGTGGCCAGGATTTCGGCAGTCCGGCTGGGTTAATTCAACACTTATCTCGAGGCCATAATAACTATGGTCAAGCGTTCCCTGAATGTGATATGTGCGGGCGAATTTTTACCAGAAAACAGAATATAACATCACACATGATAACAGTCCATTTACAAGGTCTTGGTTACGAAGCACAGTGTCGGTTATGTAAAAAAACCTTCACCACAGAACGGAATTTGAAAAGGCATATCAATCAGTTGCATAATCCCGATGTCGAGTATCCCACTTGTGATGACTGTCATAAGGTGTTTAGGGGAAAACATTCTCTTATTGCGCATATACAGGCGGTCCACAATGGGACTGAACGAGACGCTATCAAATGCCACTTGTGTGCAAAGGTTTACAGCCATAATAGGAACTTAAAACGACACATAGAACTGTTTCATGGCATAAAGGGCGAGTTTAGATGTGATATCTGCCCAAAAGTATACAGAACGAATCAGAGTCTGCGACGGCATGCAAGGACAAGCCACAACCCTGACCAGGAACAACTGACATGCAGTTTCTGCATGAAAGTTATCATTGGGCGAGAAAATTTTGATAGCCATATCCAACTCCATCACCAAGACGCTGAAACTAATGCTAGGAATGAATTTGTGTGTATCTCTTGCGATAAAAGCTTTGAAGAAGAGTTCTGTTTGCGGCAACACATCAAATCAGAACATTCTTTTAAAACCTTCTACAAGTTTTGCAGGAAATCGTTGCTCAAACAATACGGCATGGACAACCAAACCGTATACAATTGTGAATACTGTGACAATTCTTTTTTAACCGTCTACGAGCTTAAGGACCACATGCGTGTCATTCACGACACTGAGTACGCCCTTTCAACTTGCAACGTCTGTTTTAGTAAGTTTTTTAGCAAAGAAACTAGGTCTGCGCATAGGAAAGTGTGTAAGCCACCGCCAAACGTGAACACTTGCAGTCACTGTGACAAACTGTTTACAGATATTTCGAGTTTAAAATTTCATACGAGAATTTTTCACCCGCAAGCCCAAATCGCCGATTCTAACATATCATCCACGAACTTCGATGAAGAAACTCTGTCGTTTAAATGTGAGCATTGTGATCGTGTTTATTATAGCGACAGATCTCTCAAACATCATATGAAGCTAAAACATTCGACATATGAAGAAGTAGAATGTGAAGACTGTGGAAAAGTTTGCAGTAATAAGTATTATTTGGCTTCGCATATAAAAATCGTTCACAATAATGACTCTTGGTCGAGATGCGAATACTGCGATAAACAATTTAAATCGAAACGGAATATCAGAAGGCATATTGAATACACTCATTTGGGCATGCAACGATACAAATGTATTGAGTGCGAAACCTTGTTTAAAGAAAAACGGAGTCTAAGAAAACATGTTCGAACGAAGCATCCGAACTCTGCAGCTTTTCCTCAATGCCACATTTGCCACAAACGATTTGAGTCGGCCAAATCTTGTAAGATACATCTTAAACTTTTGCATTCATTCAACATGAACACTTACCCGTGTCACCTCTGTTCTGTGTCCTTCAGTTCCAATGAAGCGCTGTCTATACATCTAAAGACCAAACATTTAGCTGAAGACGAGATCTACAAATGCGAGGAATGCAACTTAGTTTTTAAAGGGCAAGAAAAGTTTGACGCTCACAACGATGTCTGTCACGTAAATTTAGTCCCTACGATCAAGCAGAAAGTTCTTCCCAGATGCATTATTTGCATGAAAGATTTTAGTACGAGGAAAACTTTGAAGCGTCATATAAAGAAATTCCATGAAGAATTTGATGTGGACGAGTTAGCTACTTTTGGTTCGAGGCGTAGAACTTTCACAGTCGAATGCGAGGAGTGTATAAAGAGTTTCAGCAACGATTTTCATTTGAACGTCTATAATAAGCTGAAGCATTTAAGAAACTCTGAAATATTTAAGTGTGGTACTTGTTACGAGTCTTATAACTCTCTGGAGTTCGCGATACAGAAGTATAAAGTTGCTCACGCAGATGCGAGCAAAAGTAAACTGATTTTGAGCGAACTATGCACCGCGGAGATGAGCGAGGAAGAAAATGACTACTCTGACTTCGGAGCTCTGCATGATATGCTGCCAGAAAGTACTACTGGCGATTTGCAAATCAAATTTGAACCTATTGAAGAATTGGACACTGAAATCAAGACGGAGCCGCCTTGGTTATAA
- Protein Sequence
- MYENHLDFVCDYCSRPFTRKCNLQTHIENCHINSSCHCNICGQDFGSPAGLIQHLSRGHNNYGQAFPECDMCGRIFTRKQNITSHMITVHLQGLGYEAQCRLCKKTFTTERNLKRHINQLHNPDVEYPTCDDCHKVFRGKHSLIAHIQAVHNGTERDAIKCHLCAKVYSHNRNLKRHIELFHGIKGEFRCDICPKVYRTNQSLRRHARTSHNPDQEQLTCSFCMKVIIGRENFDSHIQLHHQDAETNARNEFVCISCDKSFEEEFCLRQHIKSEHSFKTFYKFCRKSLLKQYGMDNQTVYNCEYCDNSFLTVYELKDHMRVIHDTEYALSTCNVCFSKFFSKETRSAHRKVCKPPPNVNTCSHCDKLFTDISSLKFHTRIFHPQAQIADSNISSTNFDEETLSFKCEHCDRVYYSDRSLKHHMKLKHSTYEEVECEDCGKVCSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALSIHLKTKHLAEDEIYKCEECNLVFKGQEKFDAHNDVCHVNLVPTIKQKVLPRCIICMKDFSTRKTLKRHIKKFHEEFDVDELATFGSRRRTFTVECEECIKSFSNDFHLNVYNKLKHLRNSEIFKCGTCYESYNSLEFAIQKYKVAHADASKSKLILSELCTAEMSEEENDYSDFGALHDMLPESTTGDLQIKFEPIEELDTEIKTEPPWL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00120760; iTF_01247363;
- 80% Identity
- -