Anig010244.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382317.1:14536107-14570670[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.98 83 4.6 0.2 1 23 62 84 62 84 0.95 2 16 0.00061 0.052 14.6 2.5 1 23 96 118 96 118 0.96 3 16 0.00021 0.018 16.1 1.5 1 23 124 146 124 146 0.98 4 16 0.00021 0.018 16.1 1.5 1 23 286 308 286 308 0.98 5 16 0.017 1.4 10.1 0.3 5 23 358 376 357 376 0.94 6 16 0.00021 0.018 16.1 1.5 1 23 382 404 382 404 0.98 7 16 0.017 1.4 10.1 0.3 5 23 454 472 453 472 0.94 8 16 0.00021 0.018 16.1 1.5 1 23 478 500 478 500 0.98 9 16 1.1e-05 0.0009 20.2 2.4 1 23 507 529 507 529 0.99 10 16 2.1e-06 0.00017 22.4 0.4 1 23 535 557 535 557 0.93 11 16 5.8e-08 4.9e-06 27.3 0.1 1 23 563 585 563 585 0.98 12 16 2e-05 0.0017 19.3 2.7 1 23 591 614 591 614 0.96 13 16 9.7e-05 0.0082 17.2 2.6 1 23 620 643 620 643 0.96 14 16 0.00037 0.031 15.3 0.7 2 23 650 671 649 671 0.97 15 16 9.9e-06 0.00084 20.3 1.0 1 23 677 699 677 699 0.97 16 16 0.026 2.2 9.5 0.1 1 23 705 729 705 729 0.93
Sequence Information
- Coding Sequence
- ATGTTCCGCGTGCAGTCGGTGTCGAGCGCGCCGGCCGCGCGCGACGCGCCGCTACAGATAGTCGCGCAGCACGGCAACCTGTTCAAGTGTCTGCTGTGCCAGAAGAGCGATGAAACTTCCTCAAGTGTTGAAGATGCAGATACAATGATGCGGCACTTGAAAACACAGCACGATGCAAGAATATACCTGTGTCGCTTCTGTGGCGCTGTCATGAGGAAACGCACGGAATATGCCACGCATATAGcgtcgcacgcacaggcagcgcgcgggtcccggccgggcgCGCACCGCTGTGCGCAGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCACGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCATCTCAAGACTCACGCGGTGAGTATACCACTACAGGTACTAACACCGCTGTGCGGAGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCACGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCATCTCAAGACTCACGCGGTGAGTATACCACTACAGGTACTAACACCGCTGTGCGGAGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCACGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCATCTCAAGACTCACGCGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCACGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCATCTCAAGACTCACGCGGTGAGTATACCACTACAGGTACTAACACCGCTGTGCGGAGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCACGCTGTGCGGGAAGGCCTTCGCCTCCAATGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCACGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCATCTCAAGACTCACGCGGTGAGTATACCACTACAGGTACTAACACCGCTGTGCGGAGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCACGCTGTGCGGGAAGGCCTTCGCCTCCAATGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCACGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCATCTCAAGACTCACGCGGTCCGCCCGCGTCCCTACAAATGCACTCAATGCGGCAAATCGTTCCTCACGCAACAAAATCTGAATCAACATGAGAAAACACATTCAGGAATCAAAGATTTCGTCTGTAATATATGCAACAAAGCCTTCAGTACGCAACACAACTTAGAAGTACACGGCGTAGTTCACTCTGGTAACAAGGCTTTTGTATGCACTGTATGTGGGAAAGCGTTCGCCAGGAGGGCTGAGCTGAGGGACCACATGCGGATACACACGGGCGAGCGGCCGTTCTCGTGCGACATCTGCGGGTCTCGCTTCACGCAGCGCTCCAACCTGCACTCGCACCGGCGCGCGACGCACTTCGACGACAAGCGCTACCACTGCGACCTGTGTCCCAAGAGGTTCAAGAGGAGGAGACTACTGGAGTACCACATAAAGGCGTCTCACACAGGCGAACGGCCACTGAAGTGTGGCATCTGTCTACTGTCGTTCGTGTACCCCGAGCATTACAAGAAGCACGTGCGCATACATAGCGGGGAGAGGCCGTATGTGTGTGAGATCTGCGGCAAATCGTTCAATTCCCGCGACAATCGCAACACGCATCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGTCGCGTGCGGCGCCGGATATATGCGCAAACAGCTACTGTACGCGCATATGAACACTAGCGGACATTTGGCGGAGTCGATAGTAGTCAATCAACCTAGGGTTATCAAAGTTACTGAAAATGGCTCGAATCCATCACCAGAAATTACCCACGTAGAAGCGAAAAATAGTAAATTTGATACGATATTTGAAGCTGATGAATTGGAGGCGAGCGTGAAATCTGTCGTGAAAGCAGAAGCAGAAGTGAATCTAGAAGACGCGAAATTCTACATAACGGAGGATAAGAAGTTAATATTACAAGATAGTGATAAAACAACTTTGAACTTAATACAAGAGGGCGATGAGTCCACGCTGCTGACTATACATAATATAGGAGAGAGAGCCGAGGGCACTATTCTGGAAGCGGTAGATGCCGACCAACTTGGTGAACAGACTGAGATCGTTGCTAATGACGAAAATGGCGGAATGGTGCGTCTAATACAAATTAAACTGCCGGACGGGAACAACGGATGGGTTGCTATAAACCGCTAA
- Protein Sequence
- MFRVQSVSSAPAARDAPLQIVAQHGNLFKCLLCQKSDETSSSVEDADTMMRHLKTQHDARIYLCRFCGAVMRKRTEYATHIASHAQAARGSRPGAHRCAQCGKCYSSRTLLAEHANLHSGARPYACTLCGKAFASKYTHQAHLKTHAVSIPLQVLTPLCGVRQVLQLAHAAGRARQPALGRAALRLHAVREGLRLQVHAPGASQDSRGEYTTTGTNTAVRSAASATARARCWPSTPTCTRARGPTPARCAGRPSPPSTRTRRISRLTRSRTLLAEHANLHSGARPYACTLCGKAFASKYTHQAHLKTHAVSIPLQVLTPLCGVRQVLQLAHAAGRARQPALGRAALRLHAVREGLRLQCGKCYSSRTLLAEHANLHSGARPYACTLCGKAFASKYTHQAHLKTHAVSIPLQVLTPLCGVRQVLQLAHAAGRARQPALGRAALRLHAVREGLRLQCGKCYSSRTLLAEHANLHSGARPYACTLCGKAFASKYTHQAHLKTHAVRPRPYKCTQCGKSFLTQQNLNQHEKTHSGIKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCTVCGKAFARRAELRDHMRIHTGERPFSCDICGSRFTQRSNLHSHRRATHFDDKRYHCDLCPKRFKRRRLLEYHIKASHTGERPLKCGICLLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENGSNPSPEITHVEAKNSKFDTIFEADELEASVKSVVKAEAEVNLEDAKFYITEDKKLILQDSDKTTLNLIQEGDESTLLTIHNIGERAEGTILEAVDADQLGEQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -