Anig019872.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382312.1:20302026-20304428[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-09 9.1e-07 29.1 0.0 2 40 15 53 14 55 0.90
Sequence Information
- Coding Sequence
- ATGCCACGTCCTGTAAAGCCCCGTAAAATCGGGAATCATACTGCTGAAGACATGAAAGAAGCTATAAAAAATATAAAAAATGGAATGAGTGTGAGGAAATCTTCCCAAACTACGGGCATTCCCTTTACAACTCTGAGGCGTTATTACCTTAAGACCCGGAACTTAAATTTAGATGAGACACGATTGACGCCAAATTACACAATCAATAAAGTTTTTACGGCGGAACAGGAAAACATGTTGAAAGATTATTTTAAATACTGTGCATTGCTATTTTACGGGTTGTCTATAAAGGAATGCCGAAGAATCGCATATCAGATGGCACAAATTAATAATTTGAAAATGCCAAATTCATGGAAGGAAAAAGAAATGGCAGGAAAAGACTGGTTGCTTTGCTTTAGGAAGAGGCATCCGGAACTAACACTAAGAAAACCCGAGCCATGTAGTCTTGCAAGAGCTACGGCGTTCAATCGGACAAATGTCGAAAGATTTTACAGCAATTTAGAAAACCTAATGAAAAGAAACTCGGCGTTTGCAGATGGAACACGTATATTCAATTTAGACGAGACTTCAACGACGACGGTCCAAAAACCTCAAAAGGTCATAGCACCAAAAGGCCGTAAAAATATAGGCAAAGTCACTAGTGGCGAACGAGGCACTTTAGTCACGACCTGTTGCATTATTAGTGCCAGTGGCATAGCATTACCACCTGTAATGGTATTCCCTCGAAAAAATTTCAAAGATTTCATGATTAAAAATACACCAACTGGCACCCTTGGACTAGCAACACCTACAGGGTGGATGAATTGTCAGATTTTTCCGGAAGTAATAAAACATTTTGTCAAACACACTAATACCACTCCCGAAAATCCAAGTATATTAATAATGGATAACCACGAATCTCACTTGTCCCTGGAAGCATTAGATATTGCTAAAGCTGCTGGTGTCCATATTCTGACTCTTCATCCACACACTTCTGGAAAATTACAACCACTTGACGTCGGGATATACGGGCCATTTAAGTCCTTCTACAATGCAGGCATGGATGCGTGGATGCTTAGGAATCCCGGCAAGCCAGTCACTATTTATGACATAAGGGAAATCATTGGTACAGCTTTTCTGAAGGTTATGACACCAGTAAATATTACAAAAGCATTCAAAGCATGCGGCATCTATCCATTTGATAGAAACTTATTTGACGATGAAGACTTCTTGCCATCATCAGTGACAGATCGCCCTTGTCCAGACTGTGAACCACGTGAGGAAATGTCTGTAATACAACCCACGCAACCTGCTCAAGCAAGTATTGATATGCCAAGCCCTTCGAGTTCTTTAATTCAACCTGCTGCTCCTGTCGGATTGTCTACCTCGCGGCGTTCAAGTGACTCTGATGTAACTTTATTTGAAGAGAATACACAATCTGCGTCAAATTTGCCGGAAAAAACTATGGATGATATACCAACTCTCCCCTCAGACAACATCATCCCACTAACAAGGGACACTTCTCCGTCAATTATGCAAGAATTGAACAATGATTCAGATATACCACTGAAGTCAATTACCGATTCTACGTTAGAGCAGCCTCCGTGTACAAATCAAGTTAGTAACTATGTAACACCGAAAAAAACCGATACTCCTCATGAGGAAGCAAAAACTTTGGCTGACATATCGCAACCTCGACCATTAATAGACCAAGTTTCTCAGAAATTACGTTTTGAAACATCAGCTGGTTCAGCAGTTTATTTAAAAACAATAGAGAACAATCTGCCATCAACAACAACAATATCTCCATTTCAGTTCAGACCCCCAATTAAAGCAGGACCGAGAAAATCTACAAGGAAACCAAGGAAACTAGGAAGAAGTTTAATAGCAACTGATACCCCGGAAAAACTAGAAATTGAAAAGGATAAAAACATGTCTAAGAAACGAAAAGAAGCTAAAAAAAGGAAAATTACGAAGAAGGTTCTTCAAAGTGATTCTGAAGAAGAAAATCAAGAACCTGACACAATTAGTTATCAGGAGAGTGATGAGGATAATGATTGGCCTGATGAAGAGATTGAAGACGATCCTGTTCCTATCACTGAAAATTGTTTAAAAAAAAAGCCTTTACATCATGTACCACAAGAAGGTGAATATGTTCTTGTAGAGTTCAATACCAAAAAATCTAAAGTATTCTACATTGGTAAAGTGTTAGAAAGTCGTAATAGGAAATTAGAATACTATATCAGCTTTCTTCGTAAAAAATGTGCGGGAAAGTTTCATATGCCAAAGGAGCCAGATTTATCTTATGTTAAAGAAAATGATGTTAAACTTATATTACCAAAACCCACTGTTGCTGGAAGCACATTCAGACAACAATCTATTTATTCTTTTGCCATTGATTTGTCACTACTTAATGTTCGCTGA
- Protein Sequence
- MPRPVKPRKIGNHTAEDMKEAIKNIKNGMSVRKSSQTTGIPFTTLRRYYLKTRNLNLDETRLTPNYTINKVFTAEQENMLKDYFKYCALLFYGLSIKECRRIAYQMAQINNLKMPNSWKEKEMAGKDWLLCFRKRHPELTLRKPEPCSLARATAFNRTNVERFYSNLENLMKRNSAFADGTRIFNLDETSTTTVQKPQKVIAPKGRKNIGKVTSGERGTLVTTCCIISASGIALPPVMVFPRKNFKDFMIKNTPTGTLGLATPTGWMNCQIFPEVIKHFVKHTNTTPENPSILIMDNHESHLSLEALDIAKAAGVHILTLHPHTSGKLQPLDVGIYGPFKSFYNAGMDAWMLRNPGKPVTIYDIREIIGTAFLKVMTPVNITKAFKACGIYPFDRNLFDDEDFLPSSVTDRPCPDCEPREEMSVIQPTQPAQASIDMPSPSSSLIQPAAPVGLSTSRRSSDSDVTLFEENTQSASNLPEKTMDDIPTLPSDNIIPLTRDTSPSIMQELNNDSDIPLKSITDSTLEQPPCTNQVSNYVTPKKTDTPHEEAKTLADISQPRPLIDQVSQKLRFETSAGSAVYLKTIENNLPSTTTISPFQFRPPIKAGPRKSTRKPRKLGRSLIATDTPEKLEIEKDKNMSKKRKEAKKRKITKKVLQSDSEEENQEPDTISYQESDEDNDWPDEEIEDDPVPITENCLKKKPLHHVPQEGEYVLVEFNTKKSKVFYIGKVLESRNRKLEYYISFLRKKCAGKFHMPKEPDLSYVKENDVKLILPKPTVAGSTFRQQSIYSFAIDLSLLNVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00783381; iTF_00147293; iTF_01367715;
- 90% Identity
- iTF_00147293;
- 80% Identity
- -