Anig017369.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- clz9
- Assembly
- GCA_947507805.1
- Location
- OX382292.1:29552355-29554091[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 1.6e-08 34.8 0.1 4 43 18 57 15 59 0.90
Sequence Information
- Coding Sequence
- ATGGTAAGCAattacaaaagaaaaacaaacaaaggatcatattcgaaacaaaagttacaagaagcagcagaagctgttagaaatggccatctgagtggctataaagctgcgcaaatttataatattcctcgcatgactattatggaccatgtgcaaaacaggagatttaaatccaattctcttggcagaagcactgcgctgactttggaagtcgaaacaaaattagcttcgttactacatttaatggaaaaatatggtttaagtttgaccaaaaaagaggtcctagaaatgtttggccagtatgtaaaccgtaatctcatatcgacgcctttcaaaaatggagctccagggcaggcgtggtttactgcattcaaaaaacgacatcatttttccgtgaagaaaccccaggcagtggaatacgcgcgtaagaaagccgtagacccatttatagtttacccatattttgaattgcttaataatacattgaaagaattaaatttattgaatcaaccagccgccatttggaatttagacgaaactagtttttcgaatgatcccaaaaaatcaaaaattgttggcatgaaaggacacgccgcgacaagagtcatttcctcgcctggtagagaaaacactactgttttgcttggcgccagtgcattaggacaaaaaacacccccactaataatttttaagggcaaaaacgtttgggatgaatggacatctccgtatgcttatcccggcacatcctacgctgctacaaaaaaaggatggatggagaccgacgtctttgaaatgtattttaaaaaagtttttttgccagctgttggagatcaatgtccgattcttcttatttatgatggacacgctactcatgtaggattaaatataatcgaggaagcgcgtaaagcagatataacaatacttaaactacctccgcatactagtcacatattacaaccgctggatgtagcggtcatgaaatcatttaaagatcggtgggatccaatgctcgtaaaatggcagcgttcaaatatcggagtgaagctcccaaagaaagagtttgcgaggttaattggagtggtttgggctcaaattgatagtcaagttttaagaaatggcttccgcaaggctggaatttacccgttcaaTTCTGAAGAAATCAAAGAAAGTCTGTTTGATTCGTTACAGCTAAGACGTTGGAAAGAACTCAAAGTTCTTAAGTCCCAAGAACGACATGAATATGACCACAATAATCAAGAAAGACTCGTTTGTTACAATGACGAATCTTTGTACGTTGCTACAACATACGAGCCACAAAGTTTGCTTTCGTTAGCCTTAAATTGCACCATACAAGTAATTGGCATTAATTCTTATCGTAGCATTAGCAATCAGCACTGTTCTGCACATTTTGTAACTGACGACCGTATTCAGAATGATGATTTAGAGAAAAAGGGTGCCAAAAGTTTAAAAGAAAACCAGTTTATAGGAGAAGAATCTCATCAAGAACTGGAACAAGAATCTTTCGTATCCAATAAGGATTTAAAACGAGTTGACAATAGTAGTAATAGAATCCAAATATTAGAAAACAGACTAGTAACTTTTGAAGAACTACTTTTGATGCACGTTAAAGCTGGAGTTAATGTAAAAGGTAAACGACAAAAAATAGCTGCAGGAGCCGAAGTTATAACACATAATGACGTTGTTAAGCGTAAATGGAAGAAAAAATTAAAAATATAA
- Protein Sequence
- MVSNYKRKTNKGSYSKQKLQEAAEAVRNGHLSGYKAAQIYNIPRMTIMDHVQNRRFKSNSLGRSTALTLEVETKLASLLHLMEKYGLSLTKKEVLEMFGQYVNRNLISTPFKNGAPGQAWFTAFKKRHHFSVKKPQAVEYARKKAVDPFIVYPYFELLNNTLKELNLLNQPAAIWNLDETSFSNDPKKSKIVGMKGHAATRVISSPGRENTTVLLGASALGQKTPPLIIFKGKNVWDEWTSPYAYPGTSYAATKKGWMETDVFEMYFKKVFLPAVGDQCPILLIYDGHATHVGLNIIEEARKADITILKLPPHTSHILQPLDVAVMKSFKDRWDPMLVKWQRSNIGVKLPKKEFARLIGVVWAQIDSQVLRNGFRKAGIYPFNSEEIKESLFDSLQLRRWKELKVLKSQERHEYDHNNQERLVCYNDESLYVATTYEPQSLLSLALNCTIQVIGINSYRSISNQHCSAHFVTDDRIQNDDLEKKGAKSLKENQFIGEESHQELEQESFVSNKDLKRVDNSSNRIQILENRLVTFEELLLMHVKAGVNVKGKRQKIAAGAEVITHNDVVKRKWKKKLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00147261; iTF_00677518;
- 90% Identity
- iTF_00147261;
- 80% Identity
- -