Anig001992.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382293.1:1589351-1591501[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-11 7.2e-09 35.8 0.0 3 39 12 48 10 54 0.85
Sequence Information
- Coding Sequence
- ATGGAACGTGTCGCTCGTGGAAGTtggacattagaacagttaaaaaacgccatggacgctgttaacggaggggtgatgtctcaacgtaaagcggccatgacgtatggcgttcctagaagaactttggtaaatcatcttaaatctggaaaagtagaaaaacaaatagggcgtcgcacagttttgaccgcagaacaagaaaatgatctagcattaagaataaaaagacttgcatctataggttttcctttgacaccaaaaatcatacgacatcaagcatttattttttgtgaaaaaaataagataccaaataaatttaacgaatctaaaaaacgagctggaaaagattggttaaaattatttcttaaaaggcatcctgacattacaaaacgtaaggtccaaattctaaacccagccagagctcaaaaattaaataagccgattgtaacaaaacattttgaggaatataaaaaaataaatgaattactaaatatccgagacaatccacagcgcttgtttaacatggacgaaaaaggttgcagactaactgtacacaaacaaccaacagttttagctaaaaaaggatcaagaagaattcatatggttgcacctgaacatgcagaaaacgtaacagtggctgcttgtgtgaatgcattgggtaatccgatacccccaatgataatatttaagggaaaaaggcagaaacctgaattcagtgacaatttacctgcagggtcacttgtaaaaatggctcccaaaggaagcatgacttcgtcattattcgtagactttattcGCCATCTAGGAAAATTTAAACCCGAGGGTAAGTGTCTGTTAGTTTTTGACGGTGCTTCCTGCCACCTCGACTATGATATTGTTGACGCAGCAGATGAGGAGGATATTGTTTTATACTGCTTACCGTCTAATACGACGCACGAACTTCAGCCGTTGGACAAAAGTGTAAACAAGTCATTTGAACACTATTGGGATCAAGAGACTTTATCGTTTTTGTATCAATACCCTGACAAAAAATTAACAAAAACGCGATTTAACTCAATTTTTAGTAAAGTATGGTCAAAGTGTATGACTCACGAAAACATAGTCAGTGGATTCAGAGCTACTGGGCTTCATCCCTACAATCCAGAAGCAATACCAGATGAAGCATATGCTCCCTCTGTATTGACTGAGAGACCACCAGAGCAAGAATATGTTTCCAGAGTACATATATCTCCAACTCCTGGTCCTTCCAATATAAATTTACGACATGCAATTAATAGTCCTAGGGCGGATAGTTCCGATTCCGATCAGACATATACTATTCGAACTCCTTGTTCACAATCTTTGCTCCTAACTGGGCTTACCCAGTTATCGCCACCATTTATCCCAGAAGCAAATAGTAGTAGTAATAAAAAAATAGTAGACTACAGCTCAACTGATACAGCTTCTGAAAATTACCTTACCACAGTCACCAGACCAATAATTTACAGTTCTGACTCTGATACTTCTTTTGACGATGCATTGATTTCCCAACATATACCTCGATCAAATTTCGAATCTATACCTAATATATATAGTTCTTCCGATGATGAGAACATAAACCCAGGATTAACGGAGCAACACACTCCTATCAAACAGAAGAATGTTTCGTGTGCTCATGTTGACGTAATAAGGCGTGACCAACACCTTGTATCAAGCGACGACGATCCAGAAGATGATATTCCATTAGAAAGCTTGCGAAATCCTTCAAATTCCTCAACTAAATCTCCATTCCAGCAATTAATACCCACGCCAAACTATGCTGTAATTAAAAACAAATCAAGACGTAAAGCATTAAATTATAAAGGTCGCATAGTAAcaaaagatttatttaaagagaaagaaaagaaaaaagaaattcaaaagaaaaggaaatttaaggaaaataaatctcaaaaaactttaaaagaacgcaataatcaaaagacagactctaaaaagaaaacttcagccaaaacaccaaaagaaatagatgatgataaatggtactgccacgcatgttatacagaacgttgtgaagatatgcgtcaatgcccactctgccgaaaatggtttcatgaacaatgtctaggtttaaccaaagaagatatagattttgactgtccgatttgcaactaG
- Protein Sequence
- MERVARGSWTLEQLKNAMDAVNGGVMSQRKAAMTYGVPRRTLVNHLKSGKVEKQIGRRTVLTAEQENDLALRIKRLASIGFPLTPKIIRHQAFIFCEKNKIPNKFNESKKRAGKDWLKLFLKRHPDITKRKVQILNPARAQKLNKPIVTKHFEEYKKINELLNIRDNPQRLFNMDEKGCRLTVHKQPTVLAKKGSRRIHMVAPEHAENVTVAACVNALGNPIPPMIIFKGKRQKPEFSDNLPAGSLVKMAPKGSMTSSLFVDFIRHLGKFKPEGKCLLVFDGASCHLDYDIVDAADEEDIVLYCLPSNTTHELQPLDKSVNKSFEHYWDQETLSFLYQYPDKKLTKTRFNSIFSKVWSKCMTHENIVSGFRATGLHPYNPEAIPDEAYAPSVLTERPPEQEYVSRVHISPTPGPSNINLRHAINSPRADSSDSDQTYTIRTPCSQSLLLTGLTQLSPPFIPEANSSSNKKIVDYSSTDTASENYLTTVTRPIIYSSDSDTSFDDALISQHIPRSNFESIPNIYSSSDDENINPGLTEQHTPIKQKNVSCAHVDVIRRDQHLVSSDDDPEDDIPLESLRNPSNSSTKSPFQQLIPTPNYAVIKNKSRRKALNYKGRIVTKDLFKEKEKKKEIQKKRKFKENKSQKTLKERNNQKTDSKKKTSAKTPKEIDDDKWYCHACYTERCEDMRQCPLCRKWFHEQCLGLTKEDIDFDCPICN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00147258; iTF_00147229; iTF_00147230; iTF_01538664;
- 90% Identity
- iTF_00147258; iTF_00147229; iTF_00147230;
- 80% Identity
- -