Abis020699.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000154.1:641440-654966[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 1e+02 4.1 0.3 3 12 642 651 641 653 0.89 2 13 0.00044 0.03 15.2 3.6 1 23 701 724 701 724 0.97 3 13 0.11 7.6 7.6 2.8 1 19 761 779 761 782 0.92 4 13 0.0097 0.65 11.0 0.8 3 23 1228 1248 1227 1248 0.95 5 13 0.028 1.9 9.5 2.0 2 23 1254 1275 1253 1275 0.96 6 13 5 3.3e+02 2.5 4.2 1 23 1293 1314 1293 1314 0.96 7 13 4 2.7e+02 2.8 0.3 5 23 1357 1375 1354 1375 0.89 8 13 0.014 0.92 10.5 0.3 3 23 1393 1413 1392 1413 0.98 9 13 1.5e-05 0.001 19.8 4.1 1 23 1419 1441 1419 1441 0.98 10 13 0.0052 0.35 11.8 0.1 1 23 1446 1468 1446 1468 0.98 11 13 0.0085 0.57 11.2 1.1 2 23 1474 1497 1473 1497 0.96 12 13 0.47 32 5.7 0.8 1 20 1503 1522 1503 1522 0.90 13 13 0.037 2.5 9.2 1.4 3 23 1535 1556 1534 1556 0.92
Sequence Information
- Coding Sequence
- ATGTCGCAGCCAAAGCGTAGATcgagaaaaacaaaattagtgCCTCGGAATACAGAAGGTGGGGAGCCTGAAATCGAGGAAGTACAAATGAAGGAGCCACAGATTAAAATAATGAACACAATGAGCTTGGCTGCGAAGCCGGCATCAAAGAAGTCCACCTCGGTACAGTTCAAAGTGGACATAGAGGTGGAAGAGTGGATCGACGATGAGCTGTTTATAGAGgaGAACTTTGCCAAAATGCAAACTGATAAGCTTTCTAAAGCTTTAGAAAAGGAAATCAAAGATGAGGTCGACTGGACTAACGATGAATATGGCAAGTTCTGGGCGGAAGCTGCCAGCGACAGTGACAATGAAGATAAACCCTTAAATAATTACGAGAAGCTCATCAAAAATCAGATAGACCCAAGCTTAATACCTGGAACATCTAAACAACCTTTGCCTGAGCTAAATCCGctaaaagaaataacaaaagaaGCTGAGCCAGAACCCAAAAAAGATGAACCTATGAAAACTGCTCCTGTTCCAAAACCAAATGTGAAAATTCGACAATATGAACGGCCGATTGCCAAGTCCAAAACGAAATCTATTGATTTGCCAAACAACCAAACTGTTAACATGAAACCTCAAATGAAAATCAATGTTATATTTACTGATGAGCTTCCAAATAATTCTGAGAATGACAAACAAGTTATTTTACTATCAAAGAGTAATAAAACTGACACACTTACAAACGAAACAAGAAAATCTGTgggaaatttaataaataatgataaatttaattcaCAAATAGACAATAATACAATTGATCttgtaaatagtaataaaactGACGCGCTTACTAATGAAGCAAGAAAAACTGTAGGagatgtattaaataaatgtaacgaAATCAATTCACAAGAAAAGAATAACAAAATTGatgtagtaaattataaaactgATAAACTAAATCATGAACCAAGAAAATCTGTTGGGCATCATGTAAATAAAGATGGAGAAATGAAACAAGCAAAGGACAATATAATTGATTTAGCAAGTAATGAAATAGACACACTAACAGATGGATCGAGAAAATCTGTAcagaataatagaaataaagaaattgattCACATAAAAATGACAATGTAATTGATTTAAGTGATGATGAAAAAGACACACTTCCCAATGAATCGAAAACGCCTGTATGGCATAAATCAAATGACGATAAAGAAATTGGTGCAAAACTAAAGAATAATACAATTGATTTGGTAAGTAAAACAGACAGATTTACTAACAAAAGTATATCTGCTGGAAAAAATTCTACAAAACAATGCGAAACTAAGAAAAGGTATGATACAAAGGAACCTTCAACTTCGGAACCTATGGAGGAAGATTTAGACGATATACTAGCAAGACCTATTTACTTTATTGATGTTGTCCAATCAGAAGAGAAGATTAACAGAATGCACCTACGCGATATGGCTTTTAAAAGTCTTTTGAAACGTCAAAATAGGAGTGACAGGAAAATCTCTGCTATGTCCCTAGAACACATAAAAGTTAAAGATGATTGTATTTTAGCTGCAGCTAACAAATTAGCCAAGACGGACAATGATGAAATTGTTCAGAAGTTAAATATAGAATTAAGAAACAGACTAGGGAGTGCCAGGTTCGAAGACATGGAATTTACAAGAGAAGATGCATTAGTGGACTACGCTTTGCGTCAATGGTACGTGTGGCAGGGTTCCATGAAAACCAGATCAGTCCCATTGTTGTACAAGTGTTACATGTGCAATGAGGGCTGGTGGAATTTAGAGCCCTTCCGTAGCCATATAAAGAAGCATAGTTATGTGCAAGTTTCACTTGAAAAGGGTGACCAAGAAAGCAATATCATTGCTCATGACTCTAGACCGCCTAAGTTCAAAATGTTTCCGATAGACTCGGACTGCTGGAAATGTGGGAAAAGTTATTCAAGTCATATGGGGTCAGATCCTCCCGGGTACAAGTGTAATGCATGCAAGAGTAAGCTCAACACATGTCAAAGTTTAGCAGAACACGAAGGAATCTGTCTAAGCGTATGGAAGAAACAAATAGAGTTGCAAAGCACGAAAGATGTTACAGCTTTTAAGTGCAAAATTTGCCCGCAGATATTTTTCAGCGAAGAAAATCTACATAAGCATCAGTATACGTTCCACGTGCCACGTTCGGACTATCCCATGCTGGTTTCGTTACGGCAATGTATGTATTGCAATCGGAATTACTCTGTATTTACATTTCATTATTGTCGAGGCAAAATACAGAAGCATGTTTGCAAACACTGTACAAGGCATTTCCCATCAGCTACTGCGTTTAACTTACATTCGCAGAATGTGAAATTTAATGTTAAATGCAATTATTGCTCGGACATTATTCCAAGAGGTTGCAGGATGGATGAGCATCTGTTGAAGCATACGGACAAGTTTGTGTTATTGTATAGGTGCTTGTTATGCGTTGACACTGTGATGATGGAGGATCCGGTTATGGTGAAACGGCATATCGGATACATACACAAATCTGTGAAAATTACGGCGTCCTGCTGTGCTAAGGTGATTATCCCGAGGAGCTGCTACACCGACAAGAAAGTTGTGATCGATTGCAGACCTTCATCTGTCCAAAATAAATCCAAAGCAATGCATCTAAAAACTTTGCTTCAAGGAGATGCAAAACAAGACTCAAAGACCGAATCTAACAAAGAATCAGAAAATAAGGATAAACACTCTTCAAAGAATGAAAATGGCCTTGACTCCTCAAAACAACAAGATTCATTAATGCATGAAAATAGCCAAGACTCCTCAATGCATGAAGTTAGCCAGGATTCCTCAAAACATGAAGACACCCAAGACTCATTTAGGGTTGAAGACAGCCAAGATTCAATGAAGATTGAAGATAGCCaagattcaataaataatgaagACAGTCAAGATTCAGTAAAGACTGAAGAGAGCCAGGCTTCAATTAAGATTGAAGACATTCAAGATTCAATTAAGATTGAAGACAGTCAGGATTcattaaagattaaagataGCAAAGACTCatcaaagaataaaaataacgaaCATTCGTCAAGAAATGTTTGTCAGAATTCGACAAAAGAAGTTGGTCAGACATCGTCAAGTCGTGAAATTCAAAATTCTTCTGTTAAAGAAGAAGATATCGAAGTAGATGTGACATCAATAAAAGTGGAAAACGTAATGGATAGTTATTATGAAGAGCAGTCAAATATAGATAGTTCTACTATGGAAATCAAACCTGATATAATTGGAGTTGAATCGATAAAAATTGAAGTAGACAACGTCATTGGTACAGAAGTGAATGTGACTGATTTGATGGACTTCGAAAATTTCGATGTGAAGAAAGAACCCGATGATGAtgaaatggcggacttaaataCATCTTCAAATTCTTCATTAGACACACATGATACTGAGATACAAAACTACAAATACATGAAGAGTTCAGAAAACAATACACCTTTTTCGGAGCAGTTGCAAACATTCCTTAAAAATGTTAGCGATGAAACTAAATCATTTCAGAATCGTTGTATCAAGAATAAGATGTACGTCTGCACGAACTGTACTTTCGAAGGTCCACGGAGGCTGTACAGAATCCACATGAAGACCTGCAAATATGCTCAAAGGGAGAACTGTAAATACGAAGAACGTATATGCACAAAATGTGACAGGAAATTTAAATCTATGAAAGATTACGTTTCGCATTTGGGTGTGCACGGTTTTGATTGGTGTTATTGTAATGAGTGCGACGTAGAATTCGTTAATTTGTGTACATGGACTATCCATATTAATAGCCATGTGACCAGGACGTTCACATCAGTGAAATTGTTGACGCACGAGAAACAAGTGTATCAGTGTAAAATATGTAAGTTGATGGTGCAAAAGTGTATGTTCTTCAAGCATTGGGAATCACATCTACATCAGCGGTCGTGTATGGTTGTGCCGTGCAGATCGAACGGTACCATTTCAAGGAAGCTGCTGGAAAGGATAATTGAAATATTCCAAACGGTTGCGAACAAGAAGCTCCCAAAGAACTGCATAGTGTGCGGGCGGTACTTCATAAGGGTCAACGAGAAGAAGCGGCACCTCGTGGAGCACCTGCTGCAGGCCGCGTCCCAAGACCGCGCGCAGGCCGGCGGCGTGCTGCTCTGCCAGATCTGCCGCGCCAGCTTCGTGAAGGCCGACCCGTTCCGTAGTCACATGCGCGACCACGCCGGCCTCACCGTGTACCACTGCGAGCTCTGCAACAAGACATTCAGCGACTCGAGCAACTTCGTGAAGCACAAGAAGGTGCACAATGTAGACGCGTACGTGTGTGACCAGTGCAACAAGAAGTTCTTGGCTAAGGCTTCGCTAGTAGCCCACATCGCGACTCACTGCCCCGAACCCATTCAGTGTGTCCACTGTCCCGCCAAAAAGTTCTATAGCGAATCGCTATACCGCCGCCACATACGCATCAGCCACGACAAAGTGAACAGCTACACGTGTCTCATCTGCCAACGGAAGTTCCCGACGATCCGGCACAAGTGGGATCACCAGTGGGAGGTCCACAAGATGCGGTCCCAAATAGCCGATTGCCCCGCGTGCCAAAAGAAGTTTAGAAAGTTTACAGATTTGAAAAACCACGCTTTCAAAGAGCATAATTTGAAATTGCAGAATGTGACAGGGGCTTCCGCTCAGCgaaaaaagtaa
- Protein Sequence
- MSQPKRRSRKTKLVPRNTEGGEPEIEEVQMKEPQIKIMNTMSLAAKPASKKSTSVQFKVDIEVEEWIDDELFIEENFAKMQTDKLSKALEKEIKDEVDWTNDEYGKFWAEAASDSDNEDKPLNNYEKLIKNQIDPSLIPGTSKQPLPELNPLKEITKEAEPEPKKDEPMKTAPVPKPNVKIRQYERPIAKSKTKSIDLPNNQTVNMKPQMKINVIFTDELPNNSENDKQVILLSKSNKTDTLTNETRKSVGNLINNDKFNSQIDNNTIDLVNSNKTDALTNEARKTVGDVLNKCNEINSQEKNNKIDVVNYKTDKLNHEPRKSVGHHVNKDGEMKQAKDNIIDLASNEIDTLTDGSRKSVQNNRNKEIDSHKNDNVIDLSDDEKDTLPNESKTPVWHKSNDDKEIGAKLKNNTIDLVSKTDRFTNKSISAGKNSTKQCETKKRYDTKEPSTSEPMEEDLDDILARPIYFIDVVQSEEKINRMHLRDMAFKSLLKRQNRSDRKISAMSLEHIKVKDDCILAAANKLAKTDNDEIVQKLNIELRNRLGSARFEDMEFTREDALVDYALRQWYVWQGSMKTRSVPLLYKCYMCNEGWWNLEPFRSHIKKHSYVQVSLEKGDQESNIIAHDSRPPKFKMFPIDSDCWKCGKSYSSHMGSDPPGYKCNACKSKLNTCQSLAEHEGICLSVWKKQIELQSTKDVTAFKCKICPQIFFSEENLHKHQYTFHVPRSDYPMLVSLRQCMYCNRNYSVFTFHYCRGKIQKHVCKHCTRHFPSATAFNLHSQNVKFNVKCNYCSDIIPRGCRMDEHLLKHTDKFVLLYRCLLCVDTVMMEDPVMVKRHIGYIHKSVKITASCCAKVIIPRSCYTDKKVVIDCRPSSVQNKSKAMHLKTLLQGDAKQDSKTESNKESENKDKHSSKNENGLDSSKQQDSLMHENSQDSSMHEVSQDSSKHEDTQDSFRVEDSQDSMKIEDSQDSINNEDSQDSVKTEESQASIKIEDIQDSIKIEDSQDSLKIKDSKDSSKNKNNEHSSRNVCQNSTKEVGQTSSSREIQNSSVKEEDIEVDVTSIKVENVMDSYYEEQSNIDSSTMEIKPDIIGVESIKIEVDNVIGTEVNVTDLMDFENFDVKKEPDDDEMADLNTSSNSSLDTHDTEIQNYKYMKSSENNTPFSEQLQTFLKNVSDETKSFQNRCIKNKMYVCTNCTFEGPRRLYRIHMKTCKYAQRENCKYEERICTKCDRKFKSMKDYVSHLGVHGFDWCYCNECDVEFVNLCTWTIHINSHVTRTFTSVKLLTHEKQVYQCKICKLMVQKCMFFKHWESHLHQRSCMVVPCRSNGTISRKLLERIIEIFQTVANKKLPKNCIVCGRYFIRVNEKKRHLVEHLLQAASQDRAQAGGVLLCQICRASFVKADPFRSHMRDHAGLTVYHCELCNKTFSDSSNFVKHKKVHNVDAYVCDQCNKKFLAKASLVAHIATHCPEPIQCVHCPAKKFYSESLYRRHIRISHDKVNSYTCLICQRKFPTIRHKWDHQWEVHKMRSQIADCPACQKKFRKFTDLKNHAFKEHNLKLQNVTGASAQRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -