Basic Information

Insect: Apomyelois bistriatella
Gene Symbol: -
Assembly: GCA_947044225.1
Location: CAMRHB010000042.1:1791928-1801046[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00066 0.044 14.7 1.2 1 23 349 371 349 371 0.98

2 8 1.1 74 4.5 0.1 2 23 542 564 541 564 0.90

3 8 0.024 1.6 9.8 1.9 1 23 611 633 611 633 0.97

4 8 0.00058 0.039 14.8 0.5 1 23 638 661 638 661 0.94

5 8 0.054 3.6 8.6 6.2 1 23 667 690 667 690 0.96

6 8 0.0047 0.31 12.0 0.1 2 23 698 720 697 720 0.95

7 8 0.92 62 4.8 2.4 1 23 726 748 726 748 0.98

8 8 5.9e-06 0.0004 21.1 1.0 1 23 754 776 754 776 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00066	0.044	14.7	1.2	1	23	349	371	349	371	0.98
2	8	1.1	74	4.5	0.1	2	23	542	564	541	564	0.90
3	8	0.024	1.6	9.8	1.9	1	23	611	633	611	633	0.97
4	8	0.00058	0.039	14.8	0.5	1	23	638	661	638	661	0.94
5	8	0.054	3.6	8.6	6.2	1	23	667	690	667	690	0.96
6	8	0.0047	0.31	12.0	0.1	2	23	698	720	697	720	0.95
7	8	0.92	62	4.8	2.4	1	23	726	748	726	748	0.98
8	8	5.9e-06	0.0004	21.1	1.0	1	23	754	776	754	776	0.98

Sequence Information

Coding Sequence: ATGGAGTCCAACGATAAGACGAGCCCAGGGCTTTGCCGGTGCTGTCTCTCGGAAGGCTGCTACAAAGATATGGGGGCCGAATACACTTGGATGAATGAAAATGAAGTTTACGCAGATATGTTGTTTGAATGCTTTGATATATCCatttctcAACATGATGAAGATCCAAATGGTCCCGCCAGACTGATTTGTGAAGTGTGTATATCAAGACTGCGTGATGCGTGCAACTTCAAAAAACAAGTAATAGACTCTGAAATAAAGTTCATTGATATGTTTGGCCAGGAGAAGTCGAatgtacaATTGAAGGCCGAGCCTGATGACACAGAGGCTGATGAAGTGGAGTATTTGGATGCTGACATGTATTTTAGTGATGATGAGCTGTTGAAATCCTCGGTACAAAAGCTGAGTGACCCTGGCATCAAAGTTTTATCAATGCCGGTAAAGATCAAGCATTCCCGATCAAAGATGGTCAATAAAACAAAGAAGACGAAAGTTGTCAAGTCGAAGAAGgctatttcatcaaaatcccaGTCTaaagATAACCGGGAATCTTGTTCTAAGAAGGAATCTCCGAAGAAAGCTTATTTCCTAGAAATAATTCCCGATACTGTCGGTGACGATCAAGACGAAGATGTTAAAATGGAATTCGGTGAAATTGAATACCTAGAAGAGGATGCCGACATTGTGGAAAaatcGGTATCAACACATTCgggaaacaataaaaattctgaCAGCAGCGCTCCAAAAAAAGGGCTGCGAAAGAGAGCCGACCGTTCCCAGCGGAACTACACTCCAGCTGATCTAAAGAAATGCATGGAGGCCGTACAAGAAAATGGCATGTCCCAGTCTGAAGCGGCCAAGATGTACAATGTGCCAAGGAAAACTATCAGCTCTATTTTGAGCAGTCTCCGGAAGAAATctgATGACGAGACCGATAGCCTAGACGAGATCCAAACGAACATTGTTCAGAAACACCTAAACAACATCCGAACGATACTAAAGCACACGAACGCCACGCCCATCAAATGCCACCGGAGAATTGGCTACATGTGCTACTACTGTCCAAAACACTACCCCATACCTGCGGATTTGAAAAAACACACGTTGAAACACCAAGGAATTTCGGAAAATTTCCACATACGAGTACTATCTGGTTACAGTGGTAAACTGGACACAACCGGCTTGAAATGCAAGATTTGTAGGAAAGATATTGACCATTTGAGCCTAGAAAAAGTCATGGAACATCTGAAAGAGCACGGGAAATATATACATACGGATATAAACAACCAAATATTACCATTTAAATTTGATACGGACGTTCTAAAATGCTATCCTGCAACATATGAAGCAAGGCATGAGAAGGTAGAAGCAGCCGAGAAACAACTGAAACTCGTGAAAGAAATCCAGACAATACTCGAAATGACCAACAGTATACCTTTCAAAGTGAAGAATGCTAGACTTTACTGCGCCTACTGCTACCTCAGCGGGGGTAATTTCGAGGACATCGACGAATTAAGAACACATACATTCGAAAATCACGACGAAGAAAGAATTGAAGCTATAGACTCGATGCTGAGACCGTTATGGCTGAACGAAGTGCTAAGGATCGACATTAAAGATTTGACGTGCAACATATGCGAAACCAGAATAGACGGTTGGAATGAAATGTTCCAACATATGTATGACGAACATGAAAAAGAATTCGATGAAGCTTACACACGTTTGATACCGTTCACACTTGGTAAAGATGTCATGAATTGCGCGCTCTGTAACGAAAGACATGCGAACCTGCCCACGGTGGACGCCCATATGAATGCTCATTACAACAACCACGTGTGCTCTGAATGCGGAGACACGTTCGTCACATTAACTAGATATAAAAAGCACGCTACCACCCATAACATCGGCTCGTTCCCTTGCAAATATTGTGGGAAAAACTTCACGTTACAAGCGTACAGAGCCAAACATACGGCGATGGTTCACGAGAATGCGAAAGTGTACAAGTGTTCGTACTGTACGGAGCGCTTCACTACTGAATATTTGAAGCATATACACATTAAGGAATGTCATAAGGATAAAATTGTGATAATTACTTGTGAAGTGTGCGGAAAGGTGTTCGATTGGCGTCCTAATTATTTGTCCCATTTGAAGAAAGCACATCGCAAATTGAAGAGATACCAGTGTACTTATTGTATGAAGTGGTTCGCAGCTAATCACGATTACAAATTGCACGTGCAACGACACACGGGCAGTGGGAAGTATTACTGTCCGGTCTGCAGTAAGAATTTTGTGACAGCTCACGAGTTGAGGAGTCATGAGAGAGTtcataaaaaagaattttaa
Protein Sequence: MESNDKTSPGLCRCCLSEGCYKDMGAEYTWMNENEVYADMLFECFDISISQHDEDPNGPARLICEVCISRLRDACNFKKQVIDSEIKFIDMFGQEKSNVQLKAEPDDTEADEVEYLDADMYFSDDELLKSSVQKLSDPGIKVLSMPVKIKHSRSKMVNKTKKTKVVKSKKAISSKSQSKDNRESCSKKESPKKAYFLEIIPDTVGDDQDEDVKMEFGEIEYLEEDADIVEKSVSTHSGNNKNSDSSAPKKGLRKRADRSQRNYTPADLKKCMEAVQENGMSQSEAAKMYNVPRKTISSILSSLRKKSDDETDSLDEIQTNIVQKHLNNIRTILKHTNATPIKCHRRIGYMCYYCPKHYPIPADLKKHTLKHQGISENFHIRVLSGYSGKLDTTGLKCKICRKDIDHLSLEKVMEHLKEHGKYIHTDINNQILPFKFDTDVLKCYPATYEARHEKVEAAEKQLKLVKEIQTILEMTNSIPFKVKNARLYCAYCYLSGGNFEDIDELRTHTFENHDEERIEAIDSMLRPLWLNEVLRIDIKDLTCNICETRIDGWNEMFQHMYDEHEKEFDEAYTRLIPFTLGKDVMNCALCNERHANLPTVDAHMNAHYNNHVCSECGDTFVTLTRYKKHATTHNIGSFPCKYCGKNFTLQAYRAKHTAMVHENAKVYKCSYCTERFTTEYLKHIHIKECHKDKIVIITCEVCGKVFDWRPNYLSHLKKAHRKLKRYQCTYCMKWFAANHDYKLHVQRHTGSGKYYCPVCSKNFVTAHELRSHERVHKKEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00146349;
90% Identity: iTF_00146349;
80% Identity: iTF_00146349;