Abis017047.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000096.1:556426-564154[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.6 6.5e+02 1.6 0.2 3 21 457 475 457 479 0.91 2 12 0.056 3.8 8.6 3.3 1 21 500 520 500 524 0.89 3 12 0.0079 0.53 11.3 2.8 1 23 538 561 538 561 0.97 4 12 1.8 1.2e+02 3.9 0.3 3 14 568 579 566 590 0.85 5 12 0.31 21 6.2 0.1 2 23 610 634 609 634 0.96 6 12 0.0054 0.36 11.8 0.1 2 21 640 659 639 660 0.95 7 12 2.8e-06 0.00019 22.1 1.2 1 23 720 741 720 741 0.98 8 12 0.0017 0.11 13.4 2.1 1 19 747 765 747 770 0.89 9 12 0.0023 0.16 12.9 2.6 1 19 789 807 789 809 0.96 10 12 0.064 4.3 8.4 0.1 2 23 816 839 816 839 0.95 11 12 0.00028 0.019 15.8 3.0 1 20 846 865 846 866 0.96 12 12 0.054 3.6 8.6 0.2 1 23 903 926 903 926 0.92
Sequence Information
- Coding Sequence
- ATGCTGTCCCCAcgtgacgatgatgatgacgataccCATCTTTGTATCAAATGTAATGCCACTATCATTGGCCTTGAAGAGTATGTCAAACACAGAAAAGAGAGATGTGGAAAGGTTTCCAAAAATGAGGCATCTAAAACTGATATGCCAATTGACACTTTAGAACCGAGTAGCGATGTATTCTTTCAGTCACTTGAGCTACAAAGCAGCGTGAAAAAAACTACTTTAGCAAGACTAACACCACCTATTCCTATTTCGAAAGCAGTTATTGATAGCAAAACATCATTAGCAGAGGCGTCTACGTCTAGAGGACTTCCTAGAATGAGTCCTTTAGAAAGCAATTTGAGAGGTGAAGATTGGATCGGTGGACATAGCCTTAGGATTGGCATCAATGAAGACAATCAGACAAAATTGATTAATGCTGTTGCAAGTATCAGCGGTACAGCAAAGAAAGATATCCCAACTTCTTCCTATAATATCGGAAGTTATAATGACTATAAAGGTGACGATGAATTTGACGATTCTGAAGACTCCGATGACGATGACGAAGAAGAAGCTCATGTATCTGGTGGGAAATGGAAACCACCTATAAACTACACTGGAGGAAAATGGCGCCCAGCGTCCCCTGAACATGAAGAATGGGACTTAAGAGATGATCAAGAAATATCAGGAGGAAAGTGGAAGTCCTTTATGACAACTAATGAAAGGGAGGAAGATTATGATGCTCCGCCTCCAGGTCACACGAAAGGAAAATGGGTGCCTGGTCAAGACAAAACGCAAATCATGCAAACTACAATACAAAGAAAAGGATCAATTCAGTATTGGTGTGGACCTTGTAACAGACGATTAGGTTCAAGAGCCATTTACGAAAAGCATTTAATGTCTAGCCTTCATATGAGAAAAGTTCTTCCTGAACAAGAATTAGAGTATTCTGGACATTTACAGCCAATAAGAAATATAGCCGAGAAGAGGTCTACGCGGCCTTCAAGATTTATAAATGATAGCTTATATTCACAAACACAGAAAAAGGGAAAACGAGACTCAAATACTAAATTGACTGTAAAGATAAGCAAGAAGAAACGGAAGAGAAAACCTTTTTTTGTTCATTGCTATGGTTGCAAAACACGCGTAAGGCAACACCTGATGGGCAAGCATCTGATCTCGCATTATCATTTCAGAAAAGCTACTGATACGAAGAGTATTGAATACCAGCAATTAATTCTTGACAACATGGATGTTATCGTACACCAATCTCCCTTTCAGTGCAGCCCATGTAAGTTTTATACTAATTGGTTGTCAACCTTTATGCAGCACTGGTTTTCTAAAGATCATGAGGAAACAATGGCCAATATCGATGGTCGGATTTGGTGTTCTTTCTGTAAGTTTGAAAGTGAAAACTCTGGAGAGATGCTGCAACATATGTCTGGACCTGATCATAGTGAAGTGGTGGCTGTAATAAATAGATCTATGCCTATAATAATTAGAAAGAAAACAATCTTCAAATGTGAAACTTGTGGTATGGAATTCCGTTACAACATAGAAATGAAACAACACTGTCGGAAAACTAATCATGTACCGTCATTTACAGCCACAGATGATTATCAGGAATTACACAAATGTGGATTTTGTAAAGCCAAATTTAAAACTTCTCTTACTTTAGCAGCTCATTTGAAATCGAAGCATAATCAAAAGACTTTGTTTTGTTTAGTTTGTGAAAAAACGTTCAACACTGCTGAAGAATCTAGATTCCACCGACAAACTTCAGAGCATAGGATAAGAAGTAAAGAGAAAATGATACAGAAGGGTGTATCTATGGATTTGAGTAAAAAATGTCCATATTGCCCAAACgcaagaatattaaaaaatataattgagcTGAAAGATCATATTCGCAAAATACATCCTAATATCAAAAAGAAgTGTCCCAAATGTGGCATGGCATTCATTCTGTCTCAAGAAGTAACAAGACACGTTCGAAGCAACGCATGTAAATTTCAACAGGAAATACCAACTAGCTCAGCTTCAGAGCTATGGAGCTGCAGCCAATGTCTCTTCACGACAGACTCAAAAGCCGAATGCTTTTTCCACGAAGTTCTACATACCAAACCAACTACAGAAACTCGCAAAGTTGGTGACAAAGAAAAAGTCATCCAAAAATATGAATGTCCTATTTGTCCTAAAGTTTTCAGAAAGGCATCTTTGCGTCATCACTTAAGACAACACACTTCTGAAAGGCCTTATGTATGTTCTACATGCAATGCTAATTTCACAAGACAATCAAGTCTAGCCAATCATTGCAAATTAGAGCAtgacacaaataaaccaacaaagAAAAAGATTGAGGAAGCAGAAAAGGTTTATGAATTTAAGTGCGAGAAATGTTCAGAGAAATTCGCTAACAGGACTGCTTTGACTCGGCACTCGTGCTGTGATATCAACAGTAGACGCTGTCCACACGACCAGTGTGAGTACGTGGCTGCTACAGCAGCACAACTTGCAAGACACAGACAAGTTCATGGAGAGGTCGGTAAACGTCATAAGTGTCCATACTGCGATTTCAAGACGAACCAATCCAGCCATCTAAAGCGCCATCTAGTATGTCATGAAGGAATCAAGCCCTATGCTTGTCCTCACTGCGAGTTCACTTGTAGAtgccagGAAAATCTGAAGAAGCACTGTCGTCGACGTCATCCCCTACTGTACCTCTATAAATGTGACATCTGTCCATTTGGCACCAACCTGGCTAAGGAACTGCGCTCACATTTAACCGACACCCATCCGGATACATATCCTGACAATAGAGTAGCTATTCAGGCTGTGAAGATACAATTGCTGTCGAATGAGGGCAAACAGCTTGAGATTGAGATGGGAGATGAGCAAGACTTTGTTTTAGAGAGTACTTAG
- Protein Sequence
- MLSPRDDDDDDTHLCIKCNATIIGLEEYVKHRKERCGKVSKNEASKTDMPIDTLEPSSDVFFQSLELQSSVKKTTLARLTPPIPISKAVIDSKTSLAEASTSRGLPRMSPLESNLRGEDWIGGHSLRIGINEDNQTKLINAVASISGTAKKDIPTSSYNIGSYNDYKGDDEFDDSEDSDDDDEEEAHVSGGKWKPPINYTGGKWRPASPEHEEWDLRDDQEISGGKWKSFMTTNEREEDYDAPPPGHTKGKWVPGQDKTQIMQTTIQRKGSIQYWCGPCNRRLGSRAIYEKHLMSSLHMRKVLPEQELEYSGHLQPIRNIAEKRSTRPSRFINDSLYSQTQKKGKRDSNTKLTVKISKKKRKRKPFFVHCYGCKTRVRQHLMGKHLISHYHFRKATDTKSIEYQQLILDNMDVIVHQSPFQCSPCKFYTNWLSTFMQHWFSKDHEETMANIDGRIWCSFCKFESENSGEMLQHMSGPDHSEVVAVINRSMPIIIRKKTIFKCETCGMEFRYNIEMKQHCRKTNHVPSFTATDDYQELHKCGFCKAKFKTSLTLAAHLKSKHNQKTLFCLVCEKTFNTAEESRFHRQTSEHRIRSKEKMIQKGVSMDLSKKCPYCPNARILKNIIELKDHIRKIHPNIKKKCPKCGMAFILSQEVTRHVRSNACKFQQEIPTSSASELWSCSQCLFTTDSKAECFFHEVLHTKPTTETRKVGDKEKVIQKYECPICPKVFRKASLRHHLRQHTSERPYVCSTCNANFTRQSSLANHCKLEHDTNKPTKKKIEEAEKVYEFKCEKCSEKFANRTALTRHSCCDINSRRCPHDQCEYVAATAAQLARHRQVHGEVGKRHKCPYCDFKTNQSSHLKRHLVCHEGIKPYACPHCEFTCRCQENLKKHCRRRHPLLYLYKCDICPFGTNLAKELRSHLTDTHPDTYPDNRVAIQAVKIQLLSNEGKQLEIEMGDEQDFVLEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073334;
- 90% Identity
- -
- 80% Identity
- -