Abis002004.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000009.1:240665-264424[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.086 5.8 8.0 0.2 3 23 138 158 136 158 0.97 2 14 0.0029 0.19 12.6 2.8 1 23 359 381 359 381 0.99 3 14 4.4e-05 0.003 18.4 0.7 1 23 387 410 387 410 0.97 4 14 0.27 18 6.4 7.0 1 23 415 438 415 438 0.94 5 14 0.00099 0.066 14.1 1.2 2 23 613 634 612 634 0.97 6 14 8.4e-05 0.0056 17.5 2.9 1 23 640 662 640 662 0.98 7 14 0.8 54 4.9 7.7 1 23 731 753 731 753 0.97 8 14 2.3 1.5e+02 3.5 0.9 1 23 760 782 760 782 0.95 9 14 0.0061 0.41 11.6 0.7 1 23 788 810 788 810 0.95 10 14 0.0079 0.53 11.3 3.4 1 23 816 838 816 838 0.98 11 14 0.048 3.2 8.8 5.3 1 23 847 869 847 869 0.98 12 14 0.0031 0.21 12.5 0.8 3 23 917 937 916 937 0.97 13 14 0.019 1.3 10.1 4.3 1 23 954 976 954 976 0.95 14 14 0.42 28 5.8 0.3 1 13 982 994 982 995 0.89
Sequence Information
- Coding Sequence
- ATGAATATGAATGTAGATGTCGACCCATTAAGTACGTACGAGTACCCCTATGACTATAACACCCAAACTAATATAAACCCCTACGCTCTCCATTCAGTGAAACAGGAGCAGCCGATGATGAACCATGAATTCCTCAACCACTTCATGGACACATCTTTCAGAAACGATAGACAATACACCAACCAATACCAAGATATTCAATACACTGATTTGCAGTCCTCGGGAAATTTGAATAACGGAAATCAGAGTAAcggaaatattaattataatgctCATAATTATGTACAAGCGCCGAAAGTGGAGGATGTAAAGCCGCCGTTTATAAAtccaaagaaaattaaaaaagagaaGGGGAAAAAGAGTGcatatttttctgaaaaaattatggataatgattttaaattttacggTTGTTCTGTGTGCAATATTAGCTTTGCAGCTTTACACGAATTAGACCAGCATGTGACGACGCACAAAGACAGGGTAACAAGCtatgatttgaaaataaacaatcaaattaaaagGAAGAATATGAAGAAAGAACAAAAGAACAAGAAGAAATTAACAAAGGATGTAAAACAAGAAGATACATTTGCATTGGAAATAAAACCTGAAGATGGTTACATTGGTAACGAGAAGGCTTCAGAATTTAATGCTAACTTAAGTGACAGTACAACTACCAGTTCTGGGAATAacggaaataaaattttaaatgacaaTAGAAGTCACGAAAGTGGAGACAAAAGAAATCAGAACATAAATGAATGTAATTCTGGTGACAATGTAAAcctaaatttaaatgtaactatGCAATCCAGGGATAGCATAAttccaaacataaataaaaataacgaaaataaaagTAACGAGACTGGGGATAACGGAATTAAGTCTTTGGGTGATGGAAATAGATTGGGTATTGGAAAAATGTCGACAGATAAAGGAAACGAGTCAAATGTCGATAACGATTCAAAAATTAATATGGAAGCAGCTATAGCCATAGTAAAAGACAATATAGCTAATATCAAAGCTAAAATTCATTCAGAAACAGAGTTGAACAATTTGGCGAAGATATATAAATGTTTCGCTTGCCAAAAACAGTTTACATTGAGTTATTATTTGAAACTGCACGTGCGATCACATACAGATGAGAAACCGTATACATGTACGGTTTGCGGGCAGTCGTTTATAACGGCGAGCAAACTCGGGAGGCACAACAAGCGTATGCACCTCTCCGTCAGATACCAGTGTCGGATATGCTATAGGTTCTTTTCCAAATTTGAATGCCTGACTCGCCACTTCGACAAGAAACATCCTGATGACAAACTCGAAGGGGAGCCCTATGatTACAACGCCATCTTGCCGTATTTAAAAGAATTAGAAGAGCAACTAAAAGAGAAATCGGAAGAAACGAAAAAGGAGAAAACCGAAGATCTATGGGACGACTGGCCCGCGCCCATAGACAACGGAGTAACCAGTGAGAAACCTGTGGAGGTCATGGTCGATGAGAAACCTTTGGAGGTTATGGTTGATGAGAAACCTTTGGAGATCTTAATCGAAGGGGATATGCCGCATATTGTGGAGATCAAAAAAGAGCAGCCCTACCCAGAATTCGCCGCCGTAAAGGACAGCGATAGCGTGAAGAGCGAGAGGGGAGACGATGACGTCATCGACGACGGCTTCAACGACGATGACGTCAAAGATGACGTCTTAGCCGACGACGGGAACGTTTCAGATGATAACTACTTTCCATCGAATACTTGGGTACCACCGACACCCAAAGTAGAAATCGAAGAGGACGTCTCAAAACGGAGGAAAAAGTCAAAATCCCCTTTGAAGTGtgatatatgtaaaaaaaagattagCACTATAACGTACATGAGGATACATATGAGGACTCACACGGGTGAGAAGCCGTTCAAGTGTTATTTGTGTGACCGAGGGTTCATCACCTCGAGCAAGCTGCATCGACACGTGCTCACACATTCCGAGGCCTGGGAAGGGAAATTGGGAGACGAAGACgtgaaagaagaaaaagatggtGTAAAAGAGATAGCTGAAGACAAGGACGGCAAGAgtgtgaagaagaagaagaagaataataaagataaaaaGAGCAGAATAAAGCGCGCGAAGGCGGAATTCGCGGCCAAATCGAAAGGCGACGCGAAACGCTCCAAGAGATGGCAGCACACGTGCGAGTTCTGTCACAGGAAGTTCCTGCACGCCGAGACGCTGCAGGTACACAAGAAAAGTCACGAAGGAGAGGACCTTGTATATCGCTGTCACTTCTGCCTTCTGCCATTCGAAACTGTAACAGCTAGAACCGAACACGAAGCAACACACAGCGGGGCGAAGCCCTACCTGTGTACAGACTGCGGGCGGGTGTACAACAAACGGGAGGCCATGATATACCACAAAAAGCAGCACAAATCGGACCAGCTGTTCAGTTGCGAGATTTGTATGAAAACGTTCAACGCCCAGTGCAAACTACAGCGACACTTGCAAAGCCACCGCGAGAAGAAATACATACTGCGGTACGAGTGTCCGGTCTGCGCGCACATGTTCCATACAAAGTATCACATACAGATGCATCTGACAACTCACCAGAAGGAGGGATTgataaaagaaaaaaatcgcTCGGAAATACTAGCAATGGTATTACAGAACGCTCGGAAATTCCCGAAGAACACCGATACGGAGCCGAACATACCCGAACCCTTGCCGAACGACGATCGTTCGCGAATATGCAACATTTGTGGCGAAATATTCCAACATTTCTACTTTCTAGAAGAACATTTGAAGAGTCACGGCTCCGAAATAGCTTTAGAAGACCTCAATAGCGAAGAGGAGAAAAAACATATATGCCCCGTTTGCAATAAAGGATtcaaattacattattatttgaaattgcATAGTTTCACGCACACCAAGGAGAAGCCATTCATTTGCCAACAGTGTGGTAAGGGCTTTATTACTAGAGTTCGATGTCGTCGTTCTGAACCTGAGACCGGATATTGGCGGCATTTTACAAAAGATGAGAACGAACCGTTCACAGCTATATGCAATTATTGTAAGAGCGAATGTTCATTCAGAACGAGTTTGCATAATTTAGTGCTGcatttatcaaaaaatcataGTGAGATATACGAGCAGTACTATAAGAAGGACCCCAATTCGGAAACGGTCTCGGAAGAAGTTTTTATCGACTGTAATGATGATGAGACTGCAACGTTGGTCAATCAACTGTTCGAAAAGGACTCAGACACGGAGGATGATGACAGTGTTCGCTGCGTCATCTGTCGAATCAATCTGGATAATGACGATGACGAGATGCGCCGCCATGTGAGGGAGAAACACTCAAATTTGATAAGCCGTCCGAAGAATGAGGAAGGAGAATTACTCTTAAAAGAAGACAAGAACGACGAAGAAGACATATTCACGGAAGTAGTATATTTGGACGACCCAGATAAACCAACGCGCCAATCAAAAAAACAGCGAAAAACTTCGACACTGAGGTACAGAAAGAGGCGCGAAAGCGATTCGTCTTATGaggaaaagataataaaaactaaaaggaTGAAATATCCGAGTGACAGTATGCCGGAGGAGAAAACACCTAAAAATAGGAAACATATGAATGAAAGTTCTCCGGAGGAAAAATCCAAAAAATCCGAAGATGAAATTGATAGTTTCGCAACTTACATCACTTGTTTGCTAAGAAAAATGCCGCAAGTCACTAGTAGGAGGGTACAAAAGAATATCATCAATATGATTTTGAGCAGTGACGAAAGTGAAATTAGCCAGCAAAATGTGACTCCTCAAATATCTTTTCAAATGTCACAATCTAGTACATTGCAGCCTTCTGTTGTACCTAATATGGTACCGTCTAATATACCTAATATGGTACCAGTAAGTTTACAACCTGTTCCTGGGAATTTTATTTTGGTTCAAAAAGATACAGTGACAAATGCTACTTCTGCTACAAGTGTAATGACagcaaatgaaaataaaagtgaaGATGAAAAACATAGCACGTGA
- Protein Sequence
- MNMNVDVDPLSTYEYPYDYNTQTNINPYALHSVKQEQPMMNHEFLNHFMDTSFRNDRQYTNQYQDIQYTDLQSSGNLNNGNQSNGNINYNAHNYVQAPKVEDVKPPFINPKKIKKEKGKKSAYFSEKIMDNDFKFYGCSVCNISFAALHELDQHVTTHKDRVTSYDLKINNQIKRKNMKKEQKNKKKLTKDVKQEDTFALEIKPEDGYIGNEKASEFNANLSDSTTTSSGNNGNKILNDNRSHESGDKRNQNINECNSGDNVNLNLNVTMQSRDSIIPNINKNNENKSNETGDNGIKSLGDGNRLGIGKMSTDKGNESNVDNDSKINMEAAIAIVKDNIANIKAKIHSETELNNLAKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCTVCGQSFITASKLGRHNKRMHLSVRYQCRICYRFFSKFECLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLKEKSEETKKEKTEDLWDDWPAPIDNGVTSEKPVEVMVDEKPLEVMVDEKPLEILIEGDMPHIVEIKKEQPYPEFAAVKDSDSVKSERGDDDVIDDGFNDDDVKDDVLADDGNVSDDNYFPSNTWVPPTPKVEIEEDVSKRRKKSKSPLKCDICKKKISTITYMRIHMRTHTGEKPFKCYLCDRGFITSSKLHRHVLTHSEAWEGKLGDEDVKEEKDGVKEIAEDKDGKSVKKKKKNNKDKKSRIKRAKAEFAAKSKGDAKRSKRWQHTCEFCHRKFLHAETLQVHKKSHEGEDLVYRCHFCLLPFETVTARTEHEATHSGAKPYLCTDCGRVYNKREAMIYHKKQHKSDQLFSCEICMKTFNAQCKLQRHLQSHREKKYILRYECPVCAHMFHTKYHIQMHLTTHQKEGLIKEKNRSEILAMVLQNARKFPKNTDTEPNIPEPLPNDDRSRICNICGEIFQHFYFLEEHLKSHGSEIALEDLNSEEEKKHICPVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRVRCRRSEPETGYWRHFTKDENEPFTAICNYCKSECSFRTSLHNLVLHLSKNHSEIYEQYYKKDPNSETVSEEVFIDCNDDETATLVNQLFEKDSDTEDDDSVRCVICRINLDNDDDEMRRHVREKHSNLISRPKNEEGELLLKEDKNDEEDIFTEVVYLDDPDKPTRQSKKQRKTSTLRYRKRRESDSSYEEKIIKTKRMKYPSDSMPEEKTPKNRKHMNESSPEEKSKKSEDEIDSFATYITCLLRKMPQVTSRRVQKNIINMILSSDESEISQQNVTPQISFQMSQSSTLQPSVVPNMVPSNIPNMVPVSLQPVPGNFILVQKDTVTNATSATSVMTANENKSEDEKHST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146632;
- 90% Identity
- iTF_00146632;
- 80% Identity
- iTF_00146632;