Basic Information

Insect: Apomyelois bistriatella
Gene Symbol: RREB1
Assembly: GCA_947044225.1
Location: CAMRHB010000082.1:72414-89772[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0088 0.59 11.1 0.7 1 23 91 114 91 114 0.96

2 11 0.022 1.5 9.9 0.1 1 23 304 326 304 326 0.97

3 11 0.0012 0.08 13.8 0.4 1 23 335 357 335 357 0.99

4 11 0.00074 0.05 14.5 2.0 1 23 363 386 363 386 0.97

5 11 0.003 0.2 12.6 1.6 1 23 731 754 731 754 0.96

6 11 0.00025 0.017 16.0 1.3 2 23 949 970 948 970 0.97

7 11 0.025 1.7 9.7 5.3 1 23 976 999 976 999 0.97

8 11 0.06 4.1 8.5 1.2 1 23 1032 1056 1032 1056 0.91

9 11 1.6 1.1e+02 4.0 0.1 1 23 1081 1104 1081 1104 0.84

10 11 0.023 1.5 9.8 0.3 2 23 1144 1165 1143 1165 0.92

11 11 0.028 1.9 9.5 5.3 1 23 1171 1193 1171 1193 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0088	0.59	11.1	0.7	1	23	91	114	91	114	0.96
2	11	0.022	1.5	9.9	0.1	1	23	304	326	304	326	0.97
3	11	0.0012	0.08	13.8	0.4	1	23	335	357	335	357	0.99
4	11	0.00074	0.05	14.5	2.0	1	23	363	386	363	386	0.97
5	11	0.003	0.2	12.6	1.6	1	23	731	754	731	754	0.96
6	11	0.00025	0.017	16.0	1.3	2	23	949	970	948	970	0.97
7	11	0.025	1.7	9.7	5.3	1	23	976	999	976	999	0.97
8	11	0.06	4.1	8.5	1.2	1	23	1032	1056	1032	1056	0.91
9	11	1.6	1.1e+02	4.0	0.1	1	23	1081	1104	1081	1104	0.84
10	11	0.023	1.5	9.8	0.3	2	23	1144	1165	1143	1165	0.92
11	11	0.028	1.9	9.5	5.3	1	23	1171	1193	1171	1193	0.97

Sequence Information

Coding Sequence: ATGCAGGGAGCTGCCACCGCGCCCGCACCACCTGCGGCCGAGCCACCCACAAAGaATATCAAAACAGAAGAAATCATAACTCAAGCAAAAATAGAGACCGATGAAATGGAAAACTTTGTAGAGAAACAAGAAATAAGACCTACAAGGACGACTAGCATTGATAGCGATAACCGCTCCGACAGAAGCGATGAAGAATACTCTAGGAGATCCCGCAAGAGGGCAGCATCTACTTCGCCCTCCCCTCTACCCCTAGATAAGAGGATTTCCAGATTCGAATGTCCCAAATGCAGACAACGATTTGATTCTGCCAATGAATTTGACGTCCACAGATTCACCGTTCATGGGCAAGACACAAGAACTGGCTTCGATGATATTACTTTTGTTGACTTTTCCAGTAAAAAGTACCCGGAAATCACGCGGGGTATCTGCGAACGTAATCCCCACATATCGATCAGCGAACAACGCTTCCGATGTGATCGCTGTTCTAGAGATTTACCATCCGTACAAGCTTTAGATGTGCACAAAAAAGCATGCACAGGCACGACCCAAATCCTGAGTCCAGAGCAAGACAGAAGAGAAGACTTTTTTGCTAAATTAGACCTTAGAAACCGATCTTTTAACATTTCTGGGACACTAACACCGCCAATGGACAGATTTGCGCCTAAATTTGATGAAAGTCACCTTGCAAATGGTATTAGACATTTAGACGCTGCCAGAGATTTAGCTGATATTCAATCTATTTTGAATGTTACATCAGCAGGAAGCCTTTTAGAAAGACTTACTGGAACAAGAGTTGGTCTTGAAAATACTGTGCTGACCCCACCCGATACGGTTGTCAAAGAAAGAGAGCAGGAAGAAACTCAAGATAACTTTGCTGCAGAGTTCAGACGTATGAAATTACGAGGGGAATTCCCATGTCGATTGTGTCCTGCGAAATTTCCAAATCTTAGAGCTCTAAAAGGACATAACAGAGTTCATCTAAGTGGTACTGGACCTGGGCCATACCAATGCAATATGTGCCCTCATGCATCTTTGGATAAAGCCGCATTGGTTCGTCATATGCGAACACATAACGGTGATCGTCCATATGAGTGTGCCGTTTGTAATTATGCATTCACAACTAAGGCAAACTGTGAAAGGCATTTAAGAAATCGCCATGCCAAAGTCACGAGAGAAGATGTCAAACGCTCAATAATTTACCATCCCTCAGAAGATCCGAATAATGATGAAGTGAATTCTAAACTTGCTCGAGAAGAAGTCAAGAGATCTCTTGCTTTCCCCACGCCAGAAATGGAAAGACGAAATGAAAATACAGGTAGAGATACTCCTCTCACACACTTTACTCCTAGCTTTATTACTGACAGACATCCAGTATCTGCTTTAGTATCTCAGCCATTACCAGATTCTCCAACCTTAACCCCAAGGGAAACTGAACCACCCATGCCTAGAATAAAAGTTAAGGGTATCGGTCAGCTAACTCAGATACCAGAATATAGGCCAGCTGACTTAACTGCATTTAAACCTAATGAGGCACCGACCACGTATGAAGAAGATGCTCCAGTTGACCTCAGCACAAATGATAGCTGTGATGTTCTTGATCTCAGTAAGAAGAGGCGTGATTCTGACAATGACGAACCTAAAGCACCAATGAGACCATCTTTTGAGCCTGACCCAGCAGCTGTTGCTGTATCAGCCTTTGAGAAGACCCGACTTTTGCTAGCTCAACAAAGACTTCTTGAAAATACATTACCTAAGATAGACCCTACATACTACACGCAATTATCACAGTTATACGCTGGCGCAGTTCCAGGACTAACCGGCCTACCTTTACCACCCTCCTTTTCAATGAATCCGTACTTTTTGCAACCATCCTTTTTTCCACACCCAAATGATTCCCAAGAAATACTCGACATAAAACAACGTATCCAAAAAGAAATAATTCGAGGATTGAGTATGTCAGGTGGCAGGCTTGTCGCTAATGAACAAGATGCTCAACCAAAGCCGGAAATTGAGGATGAAGAACAAAAACCATTACCGTTGCCCCGATCACCATCTCCTTGTCCGGAAACTGAATCTCCGAGACCGCATAGCAACAACATTGTACCACAGAATGATTCCGTCAAGATGGTTATCAAAAATGGTGTGCTTAtgccaaaacaaaaacaaaggcGATACCGCACTGAGCGGCCATTTTCATGTTCTCAATGCTCAGCACGGTTTACTCTTCGCTCAAACATGGAACGCCATGTGAAACAGCAGCATCCGCAGCATTGGAGTGTGAGAAGGCCAACACCTCGAGCACCTCCACCGTACCCCAATCCTGACACATTAGCTGATCGCGTGAAATTCGCCTTGCTAGCCCGTCATCTCGAACGGCCAATCCAACAACCTGAACGATCTCCAATACGCAGAGATTCGGATGAGGTTGCCGACAATGAAGAAGACGAAGATGATACATTAGTTATCGATGAAGAACCAGATGTCGACAGCAAGTTAGATGAGCATTCTGCAGCACATCGAGCTGCTGCTGAAATTTTGATGGCAACTCGTCAACAAGAACTTAACAAAGATTTTGATCTTAAAATTGCTGGAAATTTTATCAACAAACCTATTTCTCTTGTCACTGAAAAGTCTGATGGGGAAAATGAACCCACTCAAGTTCAAGAATCTTTGCCAGTTCCTGTGCTACCTGCTCGTagtgatgaagaagaagatgaagagGGTTTGGTTGCCTCAACAAGCGAAGGCAATAATTCTGGAAGCGATGAAAACAGATCTGATGCCGACAATGGAGCTCAGCCCCCGAAAAAGAAATCCGCGTACAGCCTAGCACCCAACAGAGTATCCTGTCCGTATTGCCACAGAAAATTCCCTTGGTCATCATCGCTCCGACGCCACGTTCTTACTCACACTGGCCAGAAACCCTTCAAATGCCCTCACTGTCCACTTCTATTCACCACGAAATCAAACTGCGATCGCCATTTGCTGCGGAAACATGGCGGGTCAGCAAGGGCAATATTAGCCGAACCAATTCCCGAAACATTATCTCCACCTCAGCCAGTAAATGATACGAGGTCTGTACCAGAGAGACCTTTCAAATGTGCGTCATGCCCAACAAGCACCTTTTCTTCATTGGAGAGTTTAAAGAAACACATGTCGTCCCGCCACGGAACTGGTGATTCGCGGTCAGAATCACCTAATCCACAAGAGCCCAATGATGATAATGTCGATGGATTGGTGTTCAAGTGCCATCTTTGCGAGGGGTCTTTCGGTGATAGAGGCGGAGCGCTGGGACACTTGGCTTCGGTGCACGCGACCGAGTATGAGCAACTTGTCAGCAAAGGAGCTCTGGATGCTGCCAGTGATAGAAGCGAAAGCGCTGATGACGATGAGAGGGGAAAGTTTCCAGATCATGCTAATAGAAAGGTCGTCTGCGCATTTTGCATCCGCCGATTCTGGTCAGCTGAAGACTTGCGTAGACACATGCGCACCCACTCTGGAGAAAGGCCGTTCGCATGCGATCTATGCCGGCGAAGATTCACCTTAAAACACAGCATGTTACGGCATCGGAAGAAGCATAGAGATGATGCCACTGATGATGAGGAACCTTCTCCACCGAACACACCCATAGAAGCTGACAATGTTCATAATGGATATCGCTATCGGGATGATGACGGCTCAGGCAGCGAGATCCCAAACAACGTGAACAATAATAACTCTCCTCCAGCAGCACCCTACGATAAGAAACTGAAACTGGACATGACTTCACGCAAATACTCCTCGGAAGCCGAAAATGATGGTGAAAATGGAAGCGATTTGATCGGTAAACTCTTAGGCATCCCTGATAAGACTATAATCAACAAATTGCTCTCTTCAGCAGACGAAGCTGCCAAATTTCTTGGAGTAAATAAATGA
Protein Sequence: MQGAATAPAPPAAEPPTKNIKTEEIITQAKIETDEMENFVEKQEIRPTRTTSIDSDNRSDRSDEEYSRRSRKRAASTSPSPLPLDKRISRFECPKCRQRFDSANEFDVHRFTVHGQDTRTGFDDITFVDFSSKKYPEITRGICERNPHISISEQRFRCDRCSRDLPSVQALDVHKKACTGTTQILSPEQDRREDFFAKLDLRNRSFNISGTLTPPMDRFAPKFDESHLANGIRHLDAARDLADIQSILNVTSAGSLLERLTGTRVGLENTVLTPPDTVVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFPTPEMERRNENTGRDTPLTHFTPSFITDRHPVSALVSQPLPDSPTLTPRETEPPMPRIKVKGIGQLTQIPEYRPADLTAFKPNEAPTTYEEDAPVDLSTNDSCDVLDLSKKRRDSDNDEPKAPMRPSFEPDPAAVAVSAFEKTRLLLAQQRLLENTLPKIDPTYYTQLSQLYAGAVPGLTGLPLPPSFSMNPYFLQPSFFPHPNDSQEILDIKQRIQKEIIRGLSMSGGRLVANEQDAQPKPEIEDEEQKPLPLPRSPSPCPETESPRPHSNNIVPQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPNPDTLADRVKFALLARHLERPIQQPERSPIRRDSDEVADNEEDEDDTLVIDEEPDVDSKLDEHSAAHRAAAEILMATRQQELNKDFDLKIAGNFINKPISLVTEKSDGENEPTQVQESLPVPVLPARSDEEEDEEGLVASTSEGNNSGSDENRSDADNGAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPETLSPPQPVNDTRSVPERPFKCASCPTSTFSSLESLKKHMSSRHGTGDSRSESPNPQEPNDDNVDGLVFKCHLCEGSFGDRGGALGHLASVHATEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDDATDDEEPSPPNTPIEADNVHNGYRYRDDDGSGSEIPNNVNNNNSPPAAPYDKKLKLDMTSRKYSSEAENDGENGSDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00720763;
80% Identity: -