Basic Information

Insect: Apomyelois bistriatella
Gene Symbol: -
Assembly: GCA_947044225.1
Location: CAMRHB010000023.1:334174-346929[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.037 2.5 9.1 1.2 2 23 375 396 374 396 0.97

2 11 0.0032 0.22 12.5 0.8 2 23 404 426 403 426 0.95

3 11 0.0006 0.04 14.8 2.6 1 23 430 452 430 452 0.98

4 11 1.1 77 4.5 0.1 3 23 486 507 484 507 0.88

5 11 0.0028 0.19 12.7 0.2 1 22 522 543 522 547 0.93

6 11 0.027 1.8 9.6 0.0 2 19 562 579 562 584 0.90

7 11 0.44 30 5.8 0.4 3 23 606 627 604 627 0.93

8 11 0.0005 0.033 15.0 0.3 2 23 641 662 641 662 0.96

9 11 0.015 1 10.4 0.1 3 23 669 689 668 689 0.96

10 11 1.6e-05 0.0011 19.7 0.3 1 23 695 717 695 717 0.93

11 11 2.4e-06 0.00016 22.3 2.3 1 23 723 746 723 746 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.037	2.5	9.1	1.2	2	23	375	396	374	396	0.97
2	11	0.0032	0.22	12.5	0.8	2	23	404	426	403	426	0.95
3	11	0.0006	0.04	14.8	2.6	1	23	430	452	430	452	0.98
4	11	1.1	77	4.5	0.1	3	23	486	507	484	507	0.88
5	11	0.0028	0.19	12.7	0.2	1	22	522	543	522	547	0.93
6	11	0.027	1.8	9.6	0.0	2	19	562	579	562	584	0.90
7	11	0.44	30	5.8	0.4	3	23	606	627	604	627	0.93
8	11	0.0005	0.033	15.0	0.3	2	23	641	662	641	662	0.96
9	11	0.015	1	10.4	0.1	3	23	669	689	668	689	0.96
10	11	1.6e-05	0.0011	19.7	0.3	1	23	695	717	695	717	0.93
11	11	2.4e-06	0.00016	22.3	2.3	1	23	723	746	723	746	0.97

Sequence Information

Coding Sequence: atggtTTATTACTGCTGTGTAAATGGTTGCAGTAATAACAGTAAAAAGAGGGATCCTAATCTTGTAATTTCATTTCACAGtTTTCCATCAAACCCCGAAGTGAAACAGAAATGGTTACGGGCGATCGGGCgacccaactgggagccccctGCATACATCCGCATATGCAGTTCTCACTTCGACCAGGAGTTGGTTAACCATGACAGCCACAGAGCAAGGCTCAAGGATGATGCCTGCCCTATTCATAATTTACCAccCAATTCAAATTTTGAAGCTTCAGACATGGAGGTGTGTAGGATATGTCTGGACACAGACTCCAAGCAGTTCAGTCTGCAGTACGGCTTGCTCAAAGACTGCATGGAATGCATTACAGGGTTTAATGATAACAACATAGAAGGTCTTCCACAGTATGTGTGCTACGAATGTGCGGGGCTGCTAACGAAGTGCTACAAACTTGTGCAGAGGAGCTTGACAGCGCAGGCGACTCTACTTGATATATTCGCTGAGAATGGCCAGATAACAAAATCACTAATCAGGAAACAGGATAGACAGAAACTGAATCTCAAATCGCCGTTGACCATACACACGACCACCCCAACACACCTATTAGAATTCAAACATGATGACGAAGAGAACTACTCATATCTTGTTAACAGTGAGTTTGTGACAGAACCGTTAGAAAAAAAGACTGAAATTAATAAAGACGTAGATATAAACggtgaatttaaaaattttgttgacGTAAACGTAGGGGATATAAAATCTGAGGTCAAACGTGAAGACTCTGAGAGtggtgatgataatgatgatgattttgtgAAGAATGATGATGGATCAGATAGTGAAGACTCTATGAGTGATGTGTGTCTCGCGAAACTCAGTGATAGGAAAcgcaaaaataatgttaaagttGAGAAAAAGTCTACTGTTAAgGTTGTTAAGAAAACagttaaaaatgaaaagaaGTCCAATAAGAAATCAGCTGATGGCTTCACACCAGATGAGATCAACATGCAGAAATATTTcaagattattaaattatctCTGGAGGAGCAAATCGAGGACTGGAAGAAGTCGATGGAGGAGCGTCCGTGGAAGACGGCCACCAACAGCGCCGTGCTCCGCTGCGAGACCTGCCTCAGGGGGTTCGCCCACATCGCCACCTACCAGAGCCATCTCAAGAGTCATGATCCGAGCCGAGGTGAAGTCGAGTGTTCGGTTTGCAAAGTGCGGTTTAAGAGTGAAGCCCTACTGAAGACTCACTCGAAACGCACGCACGGCAAGAAGTTCTACTGCAAGTCCTGTCCCAAGGTCTTCAATACcatgAACATGGCCAAGAAGCACCAGCGGCGGCACTCGGGCCACGTGTACCGCTGCGCGCGCTGCGCGTTCAGCACGCTGCACGAGTCGTGCCTGAGCGCGCACGTGCACAAGATGCACGCGCACGCGCTCGCCTGCGCGCTGTGCGGCCGCGCCTGTCTCAGCGCGCGCAGCCTCAAGCAGCACTGGGCCGCCGCGCATCCCGACCTGCCTgaACCAGAAAGCTGTAATATAGACGCGAAGTACCGTTGCGAAGAATGCGACTTAAACTTCAGCACAGAGGGCGCTCGACGCGTGCACATTCTCACTTCTAAGCAGCATCGGAAACCTGATGTCCGCACTTCAGACCCATCTTTGAAGAACACATGCAAAGTTTGCGGCGCTGAGTTCGCGACCGCGCGAGAGCTGCTCGAGCACGGCGTGGCGACCCATCCGAGGAACAAGTACAAGTACAAGCGGAACTGGCGGCAGCCCGGAGATTCTTACCCAACCGACTGCGATTATTGCGGCGTGACAGTGAAAACCCGCTGGGACCACTGGTGGCATGTGAAGCGGGAGCACCCCAAGGAGGTGGACTCCTACAGGCGCGTGTACACTGCGGTATGCGAGACCTGCGGGAAGGGCTTCCAGAGCCCTACAAAGCTAAGAATACACGAGCTTCGTCACGCAAGTCCCAGCGTGGCGTGCGTCACGTGCGGCCGGCTGTTCTACGACAAGTACGCCATGTTGCGTCACGCGGCCACGCATAACTCAGAGCGGCCGTACGCTTGTCCCCATTGTCCACAGGCGTTCAAAGTGAAGGGCAACTTGCAGAGGCACTCtgttGTGCACACCGGAGCAACCCCGTACGATTGTAAGATGTGCGACAAGAAATTTAAGCACGCCACCAGTCTGACGGTGCACGTCCGCACGGTACATTACAAACTGCCGCCGCCGCAACGCAAGAAACGCGGCCCGCGCCGCCCTAGGAATAGGACTGATATCAATAGTGATATGTGA
Protein Sequence: MVYYCCVNGCSNNSKKRDPNLVISFHSFPSNPEVKQKWLRAIGRPNWEPPAYIRICSSHFDQELVNHDSHRARLKDDACPIHNLPPNSNFEASDMEVCRICLDTDSKQFSLQYGLLKDCMECITGFNDNNIEGLPQYVCYECAGLLTKCYKLVQRSLTAQATLLDIFAENGQITKSLIRKQDRQKLNLKSPLTIHTTTPTHLLEFKHDDEENYSYLVNSEFVTEPLEKKTEINKDVDINGEFKNFVDVNVGDIKSEVKREDSESGDDNDDDFVKNDDGSDSEDSMSDVCLAKLSDRKRKNNVKVEKKSTVKVVKKTVKNEKKSNKKSADGFTPDEINMQKYFKIIKLSLEEQIEDWKKSMEERPWKTATNSAVLRCETCLRGFAHIATYQSHLKSHDPSRGEVECSVCKVRFKSEALLKTHSKRTHGKKFYCKSCPKVFNTMNMAKKHQRRHSGHVYRCARCAFSTLHESCLSAHVHKMHAHALACALCGRACLSARSLKQHWAAAHPDLPEPESCNIDAKYRCEECDLNFSTEGARRVHILTSKQHRKPDVRTSDPSLKNTCKVCGAEFATARELLEHGVATHPRNKYKYKRNWRQPGDSYPTDCDYCGVTVKTRWDHWWHVKREHPKEVDSYRRVYTAVCETCGKGFQSPTKLRIHELRHASPSVACVTCGRLFYDKYAMLRHAATHNSERPYACPHCPQAFKVKGNLQRHSVVHTGATPYDCKMCDKKFKHATSLTVHVRTVHYKLPPPQRKKRGPRRPRNRTDINSDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00146481;
90% Identity: iTF_00146481;
80% Identity: iTF_00146481;