Abis019185.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- PRDM13
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000124.1:1118354-1119730[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0037 0.25 12.3 1.4 2 23 148 170 147 170 0.95 2 10 0.012 0.79 10.7 2.9 2 21 176 195 175 196 0.92 3 10 0.0007 0.047 14.6 0.5 1 23 218 240 218 240 0.96 4 10 0.00015 0.01 16.7 1.9 2 23 247 269 246 269 0.96 5 10 0.016 1.1 10.3 0.2 2 23 277 298 276 298 0.97 6 10 2.2e-06 0.00015 22.5 0.7 2 23 304 325 303 325 0.97 7 10 0.0011 0.071 14.0 2.0 2 23 332 354 331 354 0.96 8 10 2.1 1.4e+02 3.6 4.3 1 23 361 383 361 383 0.98 9 10 0.00057 0.038 14.9 0.4 2 23 389 410 388 410 0.97 10 10 3.2e-05 0.0021 18.8 3.6 1 23 417 440 417 440 0.96
Sequence Information
- Coding Sequence
- ATGGCTCAACAAAAGTTTGCAAACCTTTGTCGTGTTTGTTTGAAAAGTGATAACTTacaggaaaataaatacaggtcTATTTTCCAACAATATAATGATTCTCGTATTTCCGACCACATCAACTCCATAGCCAATGTGGAAATCAAAGAGAACGATGGACTACCTGGGAAAATATGCACGGATTGTTGGATTGAACTGGAGGCGGCTATTACCTTCAAACTGAAATGCGAAATTACCAACACGATTTTACATCGAAAAGATTTTGATGAGTTTCAAGACAATGATGTCGTAAAAATAGAATTCAACAGTAGTGAGATAGAGGAGAAAACAACAGACATAGAACCTATTATTAAAGAAGAATATTTAGATGACATTTCAGATGATATTGATACAGGAGTTGTCAGCAAAGAAAAACCAAGtaaagtcatagatttaaaattaatatgtcaCGACTGTGGCGGCTCTTTTCCCAGCAAGTGTAAACTAGGAGTTCATTGGAAGAAAATCCATTTGCCTGAATGTTTGATTTGTAAGACATGTAAGAGGACATTTAAAACTTTCAAAGCATTTCATCGTCACGCTAAATACAACCTTAAGTCATGCAGAACAATGAAGGATGTGCAAATTCAGGGTACGGGTAAGTCGAGACTGTACCTCTGTAAGGATTGCCCATATACTTCGCGGAAAAATAAGGACATTCAAATTCATATACGCATTCACAGTGGTGAGAGACCCGTTAAGTGTAAATTATGTGAAAAGTATTTCACGCAAACCAGTTCGATGCAATCTCACATGGAGCGTACCCATGGCAAGTATAAACTTGAGATTACTTGTCAATACTGTGGTAAATATGTAAGAGGTCGCCAGGCAGTCTACAATCATTTACTCACACATAAATCACCTGGAGTACAATGTGACGAGTGTAAAAAAGTTTTCAGTTCGAAAAAAAGTTTAAGTGTACATATGGTCCGACACACAGGAATAAAGTCTATCACATGCGAAAAATGTGCCAAAAGATTTTACACAATAGCGGAACTGTGCAACCACAGACGGATAAGACATAGCAAtgaagaaatttggtacacCTGTGAGTTATGCGAGTATAAATCTCATAAATGTGCAGCAATAAAAAAACACCAAGCGAAGCACAAAGAGGATAACGTTTCTTGCAATGTTTGtggaatattttttgaaaatgatttGAAATTAAGCCAACATATGCGACGGCATTTGGAATCGGAGAAGAAATTTCAGTGTCCTCACTGTGGCAGAAACTTTTTCCATAAGGACTCTGTAGCTAAACACATTAAGGCTAAACACAAATGTACATTGTTGAATAGACCAGTTAAGGTCAAAAAAGAACTTGAACAAACCTAA
- Protein Sequence
- MAQQKFANLCRVCLKSDNLQENKYRSIFQQYNDSRISDHINSIANVEIKENDGLPGKICTDCWIELEAAITFKLKCEITNTILHRKDFDEFQDNDVVKIEFNSSEIEEKTTDIEPIIKEEYLDDISDDIDTGVVSKEKPSKVIDLKLICHDCGGSFPSKCKLGVHWKKIHLPECLICKTCKRTFKTFKAFHRHAKYNLKSCRTMKDVQIQGTGKSRLYLCKDCPYTSRKNKDIQIHIRIHSGERPVKCKLCEKYFTQTSSMQSHMERTHGKYKLEITCQYCGKYVRGRQAVYNHLLTHKSPGVQCDECKKVFSSKKSLSVHMVRHTGIKSITCEKCAKRFYTIAELCNHRRIRHSNEEIWYTCELCEYKSHKCAAIKKHQAKHKEDNVSCNVCGIFFENDLKLSQHMRRHLESEKKFQCPHCGRNFFHKDSVAKHIKAKHKCTLLNRPVKVKKELEQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -