Basic Information

Insect: Apomyelois bistriatella
Gene Symbol: SCRT1
Assembly: GCA_947044225.1
Location: CAMRHB010000056.1:367126-381671[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.03 2 9.4 3.0 1 23 290 312 290 312 0.99

2 10 0.0031 0.21 12.5 3.3 2 23 320 341 319 341 0.97

3 10 0.034 2.3 9.3 0.4 1 23 375 397 375 397 0.97

4 10 1.3e-06 9e-05 23.1 1.2 3 23 403 423 401 423 0.95

5 10 0.00018 0.012 16.5 0.5 1 23 429 451 429 451 0.98

6 10 0.0073 0.49 11.4 3.5 2 21 458 477 457 482 0.93

7 10 0.00014 0.0091 16.8 1.0 1 23 490 513 490 513 0.91

8 10 0.031 2.1 9.4 0.5 3 23 521 544 520 544 0.92

9 10 2.1e-05 0.0014 19.4 4.3 1 23 553 575 553 575 0.98

10 10 0.16 11 7.1 0.1 1 23 581 604 581 604 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.03	2	9.4	3.0	1	23	290	312	290	312	0.99
2	10	0.0031	0.21	12.5	3.3	2	23	320	341	319	341	0.97
3	10	0.034	2.3	9.3	0.4	1	23	375	397	375	397	0.97
4	10	1.3e-06	9e-05	23.1	1.2	3	23	403	423	401	423	0.95
5	10	0.00018	0.012	16.5	0.5	1	23	429	451	429	451	0.98
6	10	0.0073	0.49	11.4	3.5	2	21	458	477	457	482	0.93
7	10	0.00014	0.0091	16.8	1.0	1	23	490	513	490	513	0.91
8	10	0.031	2.1	9.4	0.5	3	23	521	544	520	544	0.92
9	10	2.1e-05	0.0014	19.4	4.3	1	23	553	575	553	575	0.98
10	10	0.16	11	7.1	0.1	1	23	581	604	581	604	0.93

Sequence Information

Coding Sequence: ATGTCTATCATCGGCTCTGTTTCTCTGGGAAGCATCTGTGAGGGTTGTTTGAGTGTGGACCGAAAGTTGTCGACGATTGACGGCGAAGAAAGTAAAGAGTTCCATTGCATTTTGGAGTCTATCGACATAAGCCACACAGTTCTGTTGTGTTGGGAATGCGCTGCCTACCTGCGGAGGTCACTGAAGTTCAGGGAGCAAGTGAAGAGTGCGAGAGACTGTCTCGTACGGTATATGTTAAACCAGACACCATTAAATTCTTTAACACGCCTACGAATTACTAAGGATAGTGTCATACAATACATCACCCACAAGACTGAAGATCTACCTCAGAACTATACAGAATATGACCATGCAAAACAAAGTACAGTCAAGAAGGAGAGAGGAAGAAATTCTCAGAAGAGTATACAAGAGGACGAGGTGTCAAATGAGGAGTCGTCCTTAAAACCGGTGGCTTTCATTAAAATAGAAGAGAATGACGAATATGATGACAGTTTTGATGTGCAAACTGTTGTAGAGGACTATGACAAGGATCTGAAGGAGTCACCATTGCAAATAGAGTTGAAGGGAGACACAGACTTGGAAGTTCCAGTGAAACGGAGAAAGAGACGGAGAGAACAAGAGAACGGTTTCAACGACTCCGATGATGAACCGTTGAAGAAGGCAGACAGAAGTCTGGAGAATGTGTCAACCCGCAAGCGTAGAACGCGAGAGAAGCCGGCGGGCGTGGTTAGTAACGCTCGCGTCGACAGGATGCTCAAACAACTCAATGTGGCGAGCGGACAGCTCGAAATGGTGCTGCTCACTTGGGAACAGGTAGAAGAGGAGAGAACAAAGGCGTTGTCGAACGAGTCGTTCACTCGCCACGAGTATCGCTGTTACGACTGCGCGCTCGGGTTCAACCATCGCATGAAGCTGGACGACCACAGGAGGAAACACGACCCTTCAAACGGTGCTATAAGCTGCTCGGTCTGCAAGATAATGTGTAAAGATGCGCATTCGTTGTCGGCGCATCGCAGGAGACATCGGGTTAGATGGCGCTGCGTGTCGTGCGGCGCGCTGTTCTCGCGCGCGGCCGTGGCGGCCGACCACCGCGCGCGCGCGCACGCCGCGCCACACCCGCTACACCGGTGCGGCGTGTGCGGGCAACCGGAGgcCACTCTCGGCAAACTGCGCTATCACATGAAAAGCCACTCGGAACGGCAGAACTGTGAGCTTTGCGGCAAAAGCTTCAAGGACAAAAGCTCGCTGAGAACACATCTCTTCATACACCGAGGCGAGAAAGAGTATGTGTGCCCACAGTGCAACAAGAAGTTCTTATTTAAGAAGGCTTTAGAAGTCCACATGGTCACGCACGACGCGCCTCAGCATTTGTACTGCCATCAGTGCGACATGAACTTCAAAAATCGTATGTCGTTTTATCAACATATGAAGTACAATTTGAAACACATCGATCCTGCTAAATTAAAACACGCGTGTCCTATCTGCGACAAAAGATTCGCCAAGTCGTCCCGACTGAACGAACATCACATAGCAGTACATCTCAAAGACACGCCTATTGCATGCGATCAGCCCGATTGTACATTTTCGTGTTCGTCTCGTCCAGTCCTGCGTACGCACATCCGCATGGTACATCGCAACGCTAGAGCCATAAGGAACCACGTGTGCCACAGCTGCGGGAAGACTTACACGACCAAGAAGACCCTGGAGGGTCACATCCGCAGCCACACCGGCGAGCGCCCGTTCCGCTGCGGCTCGTGCCCGGCCTCGTTCGGATACGAAGCGGCCTTGTACAACCACAACAAACTGTTGCATCGGAAACAGccaACCCGTAAACGTGCCGTTCCCGCCACAGAAACTCTACCCTGGCTCGTCATAGACAACAGGCAGCGCGAGGATACGGCTGATGATACTGGCAATGTAGAAAATAACGTTACgtga
Protein Sequence: MSIIGSVSLGSICEGCLSVDRKLSTIDGEESKEFHCILESIDISHTVLLCWECAAYLRRSLKFREQVKSARDCLVRYMLNQTPLNSLTRLRITKDSVIQYITHKTEDLPQNYTEYDHAKQSTVKKERGRNSQKSIQEDEVSNEESSLKPVAFIKIEENDEYDDSFDVQTVVEDYDKDLKESPLQIELKGDTDLEVPVKRRKRRREQENGFNDSDDEPLKKADRSLENVSTRKRRTREKPAGVVSNARVDRMLKQLNVASGQLEMVLLTWEQVEEERTKALSNESFTRHEYRCYDCALGFNHRMKLDDHRRKHDPSNGAISCSVCKIMCKDAHSLSAHRRRHRVRWRCVSCGALFSRAAVAADHRARAHAAPHPLHRCGVCGQPEATLGKLRYHMKSHSERQNCELCGKSFKDKSSLRTHLFIHRGEKEYVCPQCNKKFLFKKALEVHMVTHDAPQHLYCHQCDMNFKNRMSFYQHMKYNLKHIDPAKLKHACPICDKRFAKSSRLNEHHIAVHLKDTPIACDQPDCTFSCSSRPVLRTHIRMVHRNARAIRNHVCHSCGKTYTTKKTLEGHIRSHTGERPFRCGSCPASFGYEAALYNHNKLLHRKQPTRKRAVPATETLPWLVIDNRQREDTADDTGNVENNVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -