Basic Information

Insect: Apomyelois bistriatella
Gene Symbol: -
Assembly: GCA_947044225.1
Location: CAMRHB010000167.1:621878-637996[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00014 0.0097 16.7 1.8 1 23 288 310 288 310 0.99

2 10 0.2 14 6.8 0.4 1 23 343 366 343 366 0.96

3 10 0.028 1.9 9.5 4.8 1 23 373 395 373 396 0.96

4 10 5.4e-07 3.7e-05 24.4 0.8 2 23 402 423 402 423 0.98

5 10 6e-05 0.004 17.9 2.8 1 23 429 451 429 451 0.98

6 10 0.0002 0.013 16.3 2.0 1 22 457 478 457 482 0.93

7 10 0.18 12 7.0 0.1 3 23 492 513 490 513 0.92

8 10 0.022 1.5 9.8 0.1 1 23 519 542 519 542 0.93

9 10 3.7e-06 0.00025 21.7 1.0 1 23 551 573 551 573 0.98

10 10 1.5e-05 0.001 19.8 1.7 1 23 579 602 579 602 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00014	0.0097	16.7	1.8	1	23	288	310	288	310	0.99
2	10	0.2	14	6.8	0.4	1	23	343	366	343	366	0.96
3	10	0.028	1.9	9.5	4.8	1	23	373	395	373	396	0.96
4	10	5.4e-07	3.7e-05	24.4	0.8	2	23	402	423	402	423	0.98
5	10	6e-05	0.004	17.9	2.8	1	23	429	451	429	451	0.98
6	10	0.0002	0.013	16.3	2.0	1	22	457	478	457	482	0.93
7	10	0.18	12	7.0	0.1	3	23	492	513	490	513	0.92
8	10	0.022	1.5	9.8	0.1	1	23	519	542	519	542	0.93
9	10	3.7e-06	0.00025	21.7	1.0	1	23	551	573	551	573	0.98
10	10	1.5e-05	0.001	19.8	1.7	1	23	579	602	579	602	0.95

Sequence Information

Coding Sequence: ATGCTTCAGGAGGAGAATCTTGATATTCCAACGATGGACAACGATCTGAAGCCTGTTCTGGACCTAGTGAAACCGATTTGTCGGTGCTGTTTGTCTGTTGACAGAAAAGTGAAGAATGCTACTTTATACCGATCATATTTCATTGAATTAACTGGACAAGACGTAACGGAATCTGATGGTCTCCCTCACTGGCTGTGTTACGAGTGCTGCGCGTTGTTGCACAAGTCCGTAAGGTTCAAACGGAAGGTGTTACGAGCACACAACCTGCTCTACGAATACCTCACAAGATGTGCGCCGTTCCCCATAGACGCTCAGGACCCGGAGCTGAGCAAGTATGCAAGTCCGGAGCTGTGTGCAACGGACACACTCACCGTAGACACCAGCGGACGCAGCAGGCTCGGGTTCCACAAGATCCTGCAGCACGACAAACAAATATTGAAATCGGAGCTGCACAACATTGGTTTGCCAGCTGTGGGCGTGCCAATCCCAGGTCAGCACGACGATGACATCAAGACCGAACACGGCTTCTCTGATTTTGAAGATAACATCACACTGAATGAGTTTAGGTCATCAGTTAATCAGATTACGGATGAGGACATTAAGAGCTTTTTCCAAGACACGGAGCCCGCGGAGAGCAAAGAAGAAGCGCCAACGAGGAAAAGGAAGAAATTGAAGAAGGGGACCAAAACGAAGAAGAAAAAGCATAGCGACATAAAAATTGAGGTAGAAGACTCCGAACCAAAGCATTCAATAAGGAAGACTGTGGAAGTGGACCCGGAGAAGATCAGGGTCGTCATACTGAACCCCGAGGAGCAAGTGAAGCAGCGTGAGGAGGAGAGTAAGGCAGGCCTCCGCTTCCCGTTCCAATGTCAGTTGTGCTACAAGGGGTTCAACTTCGAAGCCAAGTTGGAGAATCACATGAAAAAACACAGCCCGTCGCGAGGTCCGTTCGAATGCAAGCTCTGCCACATGCACCTGCCCACCGCGTACAGTCACAGCGtgcacacacacatacacacgcGCCGGTTTGAGTGTGTGCAGTGCGGGCGGAGGATGATCGACCGCACCTCCATATTGGACCATTACAGATCACAGCACGAAGGCCAACTAACATTATACACTTGCAATTTATGTGGAAAAGTTTCGAAcaacAGCAAAACGCACAGAGGTCATATGCGGAACCACCATTCCGGGGACCGGCCCAAGTGTGAGCAGTGCGGGAAGACATTCGTAAACAAGGACTCATTGACGGAACATCAGCAGATCCACCAAGGCATAAAGAACTACGAGTGCTCGATATGCGGGGCCAAGTTCCGGACGAGGACTCAGATCAAACACCACCAGCTGAAGCACTCCTCCGCCAAGGACTTCTACTGCGTGGAGTGCGACGTGAGGTTCAAGTCCGCGCACAATCTGCGGCAGCATCTCATGAAGACGAGCAAACACAAGGACAAGCAGTTGCTTAAATACGGTTGCGCCCGCTGCGACAAGCGGTTCGAGAGCGAGcgcgcggcgcgcgcgcacgcgCTCGTGCAGCACGACGGCGTGCGCGCGCACCGCTGCGCGCTGTGCCCCGCCGCGCTCGCCACGAGGAGCTCGCTCGCTAAACACACTCTGGCGGTGCACGCGGGCAGGCGGCCGCCGCCGAGACACGTGTGCGACACTTGCGGAAAAGCATTCCGGGGTAAAAGCGTATTGACGAATCACGTGCGCACACACACGGGCGAGAAACCGTTCTCGTGTCCGCACTGCGGCCGCAAGTTCACGCAGCGCACCGCCATGCGGACTCACGTCAACCTCGTGCATCTCAAACTGCCGAGGCAGGCTAAGGTGAAAGAAATTCCCGTCGAAGCTCGCGAGCCGAAAATGGACGTTTTCGTGAAAGAAGACCAACCGCTGGTTTTCGACAATTGGAGCCGACCTCAGCTGCCCTGCGACGTCTACTTCACAGTCACGGCCGGGCCTTAG
Protein Sequence: MLQEENLDIPTMDNDLKPVLDLVKPICRCCLSVDRKVKNATLYRSYFIELTGQDVTESDGLPHWLCYECCALLHKSVRFKRKVLRAHNLLYEYLTRCAPFPIDAQDPELSKYASPELCATDTLTVDTSGRSRLGFHKILQHDKQILKSELHNIGLPAVGVPIPGQHDDDIKTEHGFSDFEDNITLNEFRSSVNQITDEDIKSFFQDTEPAESKEEAPTRKRKKLKKGTKTKKKKHSDIKIEVEDSEPKHSIRKTVEVDPEKIRVVILNPEEQVKQREEESKAGLRFPFQCQLCYKGFNFEAKLENHMKKHSPSRGPFECKLCHMHLPTAYSHSVHTHIHTRRFECVQCGRRMIDRTSILDHYRSQHEGQLTLYTCNLCGKVSNNSKTHRGHMRNHHSGDRPKCEQCGKTFVNKDSLTEHQQIHQGIKNYECSICGAKFRTRTQIKHHQLKHSSAKDFYCVECDVRFKSAHNLRQHLMKTSKHKDKQLLKYGCARCDKRFESERAARAHALVQHDGVRAHRCALCPAALATRSSLAKHTLAVHAGRRPPPRHVCDTCGKAFRGKSVLTNHVRTHTGEKPFSCPHCGRKFTQRTAMRTHVNLVHLKLPRQAKVKEIPVEAREPKMDVFVKEDQPLVFDNWSRPQLPCDVYFTVTAGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01220884;
90% Identity: -
80% Identity: -