Abis017399.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apomyelois bistriatella
Gene Symbol
-
Assembly
GCA_947044225.1
Location
CAMRHB010000100.1:1171974-1174996[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.49 33 5.6 1.5 1 21 205 225 205 229 0.88
2 16 0.0022 0.15 13.0 1.0 2 23 241 262 240 262 0.97
3 16 0.05 3.4 8.7 0.3 2 23 370 392 369 392 0.96
4 16 0.0021 0.14 13.0 4.4 1 23 398 421 398 421 0.97
5 16 0.0027 0.18 12.8 0.0 1 21 425 445 425 446 0.94
6 16 0.026 1.8 9.6 1.7 1 23 454 477 454 477 0.96
7 16 2.3 1.5e+02 3.5 1.4 1 23 481 504 481 504 0.91
8 16 0.00053 0.036 14.9 0.2 3 23 518 538 516 538 0.96
9 16 0.00023 0.016 16.1 1.7 1 23 546 568 546 568 0.98
10 16 0.0012 0.083 13.8 0.5 2 23 604 625 603 625 0.96
11 16 0.089 6 8.0 0.3 2 23 630 651 629 651 0.94
12 16 0.00022 0.015 16.2 0.3 2 23 667 689 666 689 0.96
13 16 9.4e-05 0.0063 17.3 4.0 1 23 695 717 695 717 0.99
14 16 4e-05 0.0027 18.5 2.2 2 23 724 745 724 745 0.97
15 16 0.0068 0.46 11.5 0.6 1 23 751 774 751 774 0.92
16 16 0.11 7.5 7.6 0.7 2 23 780 802 779 802 0.95

Sequence Information

Coding Sequence
ATGAACATAGCAGTTGAAGATGTGGAATATATAAAGCAAAAACTCAGCAATCTGTGTCAAGCAAAGAGGTTTTGCTCGATATGTTTGGAAAATGCAGAGAAACTGTGGCCGATGGAGACCGAATTTGATATTACAGTAAAAAACAAGACACTTAAAAAGAGATTAAAAGATATGGTCTACTATGTCTTTGCAGATtgGAAAGAAGTAATCACAAGCATCTACATTTGCAACTACTGCATAGAGAGAAGCATACAATCATATCTGTTTATATTTAATGCAAGGCAATTATCAAAAATCATGTTAAACTATGTAGAAGATTTATCAACTAAGATTAATGACTTGTGTGATCAATTAGATACTGAATGTGATTACGATAATTCTAATCTAGTcattgtacttaatgaaaaagaagatgatttaaataattatgtagacATTTGTAAAACAACTGAAATCACGGCTAAAGAATCGTCTGTTATCGTACATAAAGATAAAGTTTCAATTCAAGAGAATAGTAAATCAGATGAAgataatgtaaatttaaaatgcaCGGCTTCAGAAAAGAAATTAGTAAAGTTaaggaaaaagaaaagattttcAAAGAATGGtatttataaatgtttgatatgcAAAAGGGTTTTGTCGACATTGAATGCTTGGTCTGAGCACGAGAAAAATTGCAAACATCACAGGCTTATAACAAAGACCATTCTGCCATTGCAATGTAAAACATGTTCTGAAGTGTTGAAAACCCAAAGATTATTGACACTACATTATAAAATTCATCAATTGGAAAGATGCAAGATTTGCCATTTTCTAATGCCAGTGGGGGCATTGCGCGATCATTTGAAATTGAACCATATGGATGATATTCATATATGCGAAATTTGCGAACACATTTCTTACTCAGTTCTCGCATCAGAAATTCATGTAAAGAAAAAACATGGTGACCCTCAATGTATCAtgtgtttaaaaattttcaaaatttcagaTCTAAATAGTCACAAATGCAAATTCAGATGTTTATATTGTAAAGAAATGCCGTGTATTCATCATAAATATTTAGTCCATTACAGGGAACAAGTGCTGAATGAAGCTGCTAAGATTCAATGCTTAGATTGCAATTATGTTTGTCCCAAACGAGAAGCATTGCTTGGCCATGTAAATCGAGAGCATCTCGATCATCATCCGTTCACATGCGCTCATTGCTCGCAGCAGTTCTATTCGAAAGTAACATTAAGAAATCATCTGAATCGATTTCACAGTGAAAATTTCGTGTGCGAATTTTGCGACGAAAACTTCAAAATGGAGGCCAATTTGGAGGAGCATGTAAAAGTATGCAAATTGATTAAAAGGCAATTCAAATGTGACAACTGCGCCTCGTCTTTTGAAACGCCGCAAGAATTAATATCTCATAAACATTCTAAACACGAGGAAACATTCCCTTGTGATTTATGCAACAGTAAATTTTTTTCCGTCTTGAAGCTAAAAGAACACAAGTTTAGAATACATTCAGGTATCCAGATGAAAAGAAAGAGGAGTGACTTGGATTGTACAATATGCGACATTAAATTTGACGACAAAAAAGAATTTAGTCAGCACATTGCTTCGCACGGTGCTGTTGATAGTATAAAATTCCCTTGTAGGACTTGTGACAAAGTGTTTGATGATATAAAGAAACTTCACGCCCACACCCGCATGCATGGTGATGACGTCATCAAGTGTACTAATTGCAATAAACTAATAACCAATGCTTTCTTTCCCCAACACATGATATACTGTGCTGATAGAAATGAGGGAAACAATCTATCATGTGAGACGTGCGGTAAAAGTTTTCAAACGGAATCAATTCTGAAATTGCACAGACAAGTCCATTTAGACCCTATTACCTGTCAGGTATGTGGAAAATTACTAAAGCCAGTATATCTTAAACGGCATTTGAAATACGCTCATGGTCAGAAGAAGGACAAAACACCGAAAAAGAACTTAAAAGTAATCAAATGTGAGGTGTGTGGACATATGGTTACACGGAAAGGAGAATTAGAAGCTCATGTTAATAGATTCCATTTAAAGAtaaaaccttatgaatgtaacaCTTGTAAAAAGACATTTTGTGGGAAAGAACGTTTGAAAGAACATATTCAAACTCATTCAACTGATCACACGCGATATTGTACTGTTTGCGGAAAGAAATTCGCCAATCAGGTGTGTTTAAAAATGCATCTACGTTTACACACAGGTGTAACGCCATACGCCTGTGATGTATGTGGAGAAAAATTTAGATCTTCTAGTATAATGAACACGCACAAGATTAAAAAACATACGGAAAAGACAATACCGTGTCCGTTGTgtgataatatgttttatttagcgAGGGAAATGCGACATCATTTCAAGAAAGTTCATTGGAAGAATAAGGGGCAGAAATTTGATCCTAGAGATGTCAAAGAACTGAGGGAAGAATTTTACCATTTGTTCGAAGACCGTAGGATTCCTAAAGTTAACGAGAAtgatgttatattttaa
Protein Sequence
MNIAVEDVEYIKQKLSNLCQAKRFCSICLENAEKLWPMETEFDITVKNKTLKKRLKDMVYYVFADWKEVITSIYICNYCIERSIQSYLFIFNARQLSKIMLNYVEDLSTKINDLCDQLDTECDYDNSNLVIVLNEKEDDLNNYVDICKTTEITAKESSVIVHKDKVSIQENSKSDEDNVNLKCTASEKKLVKLRKKKRFSKNGIYKCLICKRVLSTLNAWSEHEKNCKHHRLITKTILPLQCKTCSEVLKTQRLLTLHYKIHQLERCKICHFLMPVGALRDHLKLNHMDDIHICEICEHISYSVLASEIHVKKKHGDPQCIMCLKIFKISDLNSHKCKFRCLYCKEMPCIHHKYLVHYREQVLNEAAKIQCLDCNYVCPKREALLGHVNREHLDHHPFTCAHCSQQFYSKVTLRNHLNRFHSENFVCEFCDENFKMEANLEEHVKVCKLIKRQFKCDNCASSFETPQELISHKHSKHEETFPCDLCNSKFFSVLKLKEHKFRIHSGIQMKRKRSDLDCTICDIKFDDKKEFSQHIASHGAVDSIKFPCRTCDKVFDDIKKLHAHTRMHGDDVIKCTNCNKLITNAFFPQHMIYCADRNEGNNLSCETCGKSFQTESILKLHRQVHLDPITCQVCGKLLKPVYLKRHLKYAHGQKKDKTPKKNLKVIKCEVCGHMVTRKGELEAHVNRFHLKIKPYECNTCKKTFCGKERLKEHIQTHSTDHTRYCTVCGKKFANQVCLKMHLRLHTGVTPYACDVCGEKFRSSSIMNTHKIKKHTEKTIPCPLCDNMFYLAREMRHHFKKVHWKNKGQKFDPRDVKELREEFYHLFEDRRIPKVNENDVIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-