Abis018668.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000117.1:354759-355949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.003 0.2 12.6 0.2 1 23 72 95 72 95 0.92 2 10 0.016 1.1 10.3 0.5 3 23 125 146 124 146 0.94 3 10 6.6e-05 0.0045 17.8 1.0 1 23 167 189 167 189 0.99 4 10 0.012 0.79 10.7 0.4 1 23 193 215 193 215 0.94 5 10 0.0078 0.52 11.3 0.4 1 23 220 243 220 243 0.85 6 10 0.00078 0.053 14.4 3.6 1 23 249 272 249 272 0.95 7 10 4.2e-05 0.0029 18.4 0.2 1 23 279 302 279 302 0.98 8 10 4e-05 0.0027 18.5 1.2 1 23 308 330 308 330 0.95 9 10 2e-06 0.00013 22.6 1.4 1 23 336 358 336 358 0.99 10 10 0.0002 0.014 16.3 2.4 1 23 364 386 364 387 0.94
Sequence Information
- Coding Sequence
- ATGCTCATGCACGTTTATTTTCTCATTTTAGGTGAGGACGCTACAGTCGACGATGGCATAATTGTTAACGAAGATAATCTTATAAATGAAAGCAAGATTGAAAATATTGAAGATCACAAACGGCTGAACGATGAGATAAAAGCACGAAAATTGTGTGCTGTATCTCTTCTAGAAAATTCTAGAATATGCCCCTTTAGGTGGAtgaagaatttgtttttatgtatgtactgtGAACAGAATTATTCAGACCCAGCGGACTTGAGAGAACATCATGCGATTGAACATACAAACCTAACTTTTTCACAAATAAAGTACTCGTTATCAAAACTAAAACCGAATGAGCTTATCAAAATAGATATAACTGATGTAGACTGCAAACTGTGTGATGAAAACATTAAAGATTTGGATGAATTAAAGGTTCATTTGTGTGAGGAGCACAAGGCATTAGATCTGAAATTCAGCGATGGAGTATTACCGTTCAGAGTAACAAAAACAGAATTCAAATGCACTATTTGTGACGAAAGATACGACGAATTCAAGACACTCAATCAGCATATGAACATACATTTCCAGAACTTCATTTGCGAACAGTGCGGCAATGGATTCATGACGCCAGAAAGGTTGAGGACACATTCCTATTCCCATGAAACAGGATCGTTCCAGTGTGAGAGTTGTGATAAAGTTTTCAAATCGATGAACGCGAAAAATGAACATTTCGCCGTAGTCCACATGCGCGCTAAAAGACACAGATGTCCTCATTGCCCTGaagcttttaaaaattatttccaaAGAAACAAACACATATCGAACATACACGgagtaaaattaaaagaatttaaGTGTAACATGTGCCcaaaaattttctatttaagCGGAAAACTGGGTGTTCACATAAGAACCGTACATTTGAAAGAGAAAAGACACGCTTGTGATTTGTGCGAATGGAAATTTTATTCTAAATCTGAACTGAAAGAACATATGGTGAAGCATGGTGGGGAGAGGAAGTATAAATGTGACGTGTGCAAAAAAGCATACGCTAGGAAATACACGTTGACTCTACACACTAGAATACATGATCGtgataaaagatttatttgtgCTGCTTGTGGCATGTCGTTCGTTCAGAATTGTAGTTTGAAAAAGCATGTTAAAGTTCATCATCCGGATTTGGAAATGGATAAATTTTCTTGA
- Protein Sequence
- MLMHVYFLILGEDATVDDGIIVNEDNLINESKIENIEDHKRLNDEIKARKLCAVSLLENSRICPFRWMKNLFLCMYCEQNYSDPADLREHHAIEHTNLTFSQIKYSLSKLKPNELIKIDITDVDCKLCDENIKDLDELKVHLCEEHKALDLKFSDGVLPFRVTKTEFKCTICDERYDEFKTLNQHMNIHFQNFICEQCGNGFMTPERLRTHSYSHETGSFQCESCDKVFKSMNAKNEHFAVVHMRAKRHRCPHCPEAFKNYFQRNKHISNIHGVKLKEFKCNMCPKIFYLSGKLGVHIRTVHLKEKRHACDLCEWKFYSKSELKEHMVKHGGERKYKCDVCKKAYARKYTLTLHTRIHDRDKRFICAACGMSFVQNCSLKKHVKVHHPDLEMDKFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720641;
- 90% Identity
- iTF_00720641;
- 80% Identity
- -