Abis010646.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000042.1:1185828-1189365[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0029 0.19 12.7 0.7 3 23 2 22 1 22 0.97 2 13 0.0016 0.11 13.4 2.6 1 23 58 81 58 81 0.97 3 13 0.01 0.67 10.9 1.7 2 23 89 111 88 111 0.95 4 13 0.00064 0.043 14.7 1.9 1 23 117 139 117 139 0.97 5 13 0.0031 0.21 12.5 0.1 1 21 145 165 145 166 0.94 6 13 5.4e-05 0.0036 18.1 3.6 2 23 173 195 172 195 0.97 7 13 0.0024 0.16 12.9 0.9 1 20 204 223 204 226 0.94 8 13 0.012 0.79 10.7 2.2 1 23 231 254 231 254 0.91 9 13 0.21 14 6.8 1.3 1 23 261 284 261 284 0.90 10 13 0.00038 0.026 15.4 0.9 2 23 292 314 291 314 0.96 11 13 4.9e-05 0.0033 18.2 5.1 1 23 320 342 320 342 0.98 12 13 4.7e-06 0.00032 21.4 1.7 1 23 348 370 348 370 0.99 13 13 0.0007 0.047 14.6 1.3 1 23 376 399 376 399 0.97
Sequence Information
- Coding Sequence
- ATGTGTGATCTTTGTCCGTCTGGTTTCATCACGGAGAGACAATTGAGAAGCCATAAAAAGACACACAATAAGTCAACTTTTTCGTGTCGTTTCTGCCCCGATAATTATGACTCTCTTAAACAGAAGAATACACACGAGTTGTCGGAACACGGCATTGCTCCGGAGCCTCACTACAGATGTCGTCAATGTAATGAAGTGTTTAAATATCAACACGCGAAAGATAATCATATGCGTGAAGTACACGGTGTGATATCAGCCCTGATTCAATGCAGATATTGTGTCAAATATTTCACCAAGAGAACTGCGTACAGGCTACATCTCCAACAATCACATATGATGACGAAACCTCATAAATGCAATGTGTGTTATAAATCTTTCGCATTTTTACCGTTGCTGAAGGAACACCAAGTTAAACATACGAAAGTTAAGAACTTTAATTGTCAAGTGTGTAAAAAAGAGTTTTCCCTTCAGATAGCTTTGCTCGCACATGTGAAACGTCGTGAGGGATGCCAATTGAAATGCAAGGAGTGTGGTCATCTTTTCATAATGAAACATAATTTAGAAACACATATGAAAACGATACATAGTGGCTCGATCAGCTCTGAAAATTACGTATGTGAAGACTGCGATGCCGGTTTCATAACGCAAAGGAAGTTACTAGCCCATAAAAGCTGCCACAAACTGGGGAATTTCAAATGCGAATTTTGTCCGAAAACATTTGACACTTATCGCAAAAAGAAATTGCACGAGAAGGCGGTGCACATACATTTTAATTTGCTGCACAAATGTGCGTTTTGTAACGAAAGGTTTACAGGCACTAAGAGTAAGGCTGATCACATGACAGCTGTGCATGGGGTGAAAAAGGTTACAGTGAAATGCAGGGCATGCGACAAAGATTTTAATAGTCAGAACGAGTTGAGAATTCACACTAAAAGAGACCATTTGATGGAGAGGCGTCACAAGTGTTCTGATTGCGATATGAGATTTTTCTCCAAACACGAATTGACGGAACACATGATAAAGCATAGCGGTGAAAGGAATTTCCAATGCAAGGTCTGCTTGAAGTCGTACGGGAGAAAGAAGACTTTGACTGAGCATATGCGTATACACGCGAACGACAGGCGATTCAAGTGCGAGTTTTGTGGGCAAGCTTTCGTTCAGAAGTGTAGCTGGGCCGGACATGTGAGGTCGAAACATCGCGAACGTGACGTAGTGTAA
- Protein Sequence
- MCDLCPSGFITERQLRSHKKTHNKSTFSCRFCPDNYDSLKQKNTHELSEHGIAPEPHYRCRQCNEVFKYQHAKDNHMREVHGVISALIQCRYCVKYFTKRTAYRLHLQQSHMMTKPHKCNVCYKSFAFLPLLKEHQVKHTKVKNFNCQVCKKEFSLQIALLAHVKRREGCQLKCKECGHLFIMKHNLETHMKTIHSGSISSENYVCEDCDAGFITQRKLLAHKSCHKLGNFKCEFCPKTFDTYRKKKLHEKAVHIHFNLLHKCAFCNERFTGTKSKADHMTAVHGVKKVTVKCRACDKDFNSQNELRIHTKRDHLMERRHKCSDCDMRFFSKHELTEHMIKHSGERNFQCKVCLKSYGRKKTLTEHMRIHANDRRFKCEFCGQAFVQKCSWAGHVRSKHRERDVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -