Basic Information

Insect: Apomyelois bistriatella
Gene Symbol: -
Assembly: GCA_947044225.1
Location: CAMRHB010000167.1:461372-472478[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0013 0.09 13.7 6.4 1 23 264 287 264 287 0.94

2 14 0.7 47 5.1 3.8 1 23 294 316 294 316 0.94

3 14 0.02 1.4 10.0 4.4 1 23 320 342 320 342 0.96

4 14 2.5e-05 0.0017 19.1 1.4 1 23 347 370 347 370 0.97

5 14 1.3 87 4.3 0.1 3 23 377 398 377 398 0.94

6 14 0.32 22 6.2 0.0 3 19 408 424 407 427 0.93

7 14 0.1 6.8 7.8 0.6 3 23 435 456 434 456 0.92

8 14 0.0039 0.26 12.2 1.7 1 20 465 484 465 486 0.92

9 14 0.061 4.1 8.5 1.0 3 23 491 512 490 512 0.92

10 14 6.2e-05 0.0042 17.9 2.0 1 23 515 538 515 538 0.91

11 14 1.1e-05 0.00071 20.3 0.0 2 23 614 635 613 635 0.97

12 14 1.1e-05 0.00077 20.2 2.7 1 23 641 663 641 663 0.98

13 14 4.1e-05 0.0028 18.4 3.0 1 23 669 691 669 691 0.97

14 14 0.00012 0.0081 17.0 1.8 1 23 697 720 697 720 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0013	0.09	13.7	6.4	1	23	264	287	264	287	0.94
2	14	0.7	47	5.1	3.8	1	23	294	316	294	316	0.94
3	14	0.02	1.4	10.0	4.4	1	23	320	342	320	342	0.96
4	14	2.5e-05	0.0017	19.1	1.4	1	23	347	370	347	370	0.97
5	14	1.3	87	4.3	0.1	3	23	377	398	377	398	0.94
6	14	0.32	22	6.2	0.0	3	19	408	424	407	427	0.93
7	14	0.1	6.8	7.8	0.6	3	23	435	456	434	456	0.92
8	14	0.0039	0.26	12.2	1.7	1	20	465	484	465	486	0.92
9	14	0.061	4.1	8.5	1.0	3	23	491	512	490	512	0.92
10	14	6.2e-05	0.0042	17.9	2.0	1	23	515	538	515	538	0.91
11	14	1.1e-05	0.00071	20.3	0.0	2	23	614	635	613	635	0.97
12	14	1.1e-05	0.00077	20.2	2.7	1	23	641	663	641	663	0.98
13	14	4.1e-05	0.0028	18.4	3.0	1	23	669	691	669	691	0.97
14	14	0.00012	0.0081	17.0	1.8	1	23	697	720	697	720	0.97

Sequence Information

Coding Sequence: ATGGAACAAATCTTGATGTGCCGGGTCTGCCTCACGgtagagggaaagttttcttaCATTCACGATTTCAGCACTGCCCAAGCGTACGAAAGTCTTATTGGATATCCGTTGATACCGTCTGACGGATACCCACAGCATCTCTGCTCGTACTGCCATCGAACCATTCACAAATTTGTGGAATTCAAAGCGAGATGTGTCAAAGTCCTCGAGGTGCTGCAACGGGCCTTAGTGCAGGGCGAAATGATAACAAAACAATACTCCCACGTGTTGACGTCAACCTGTCCAGATCTAAAGCCGAGATACATCAGAACAAAAACCATAACCATAGATATAACAAATTCCGAACCAGAAATGATATTAGTGAACGAGCCGACAGATCTCGCTGAAATAGACTTAGAAACTGTTAAGGAAGAAAAAGATGATGACGTTAACGATATGGATGAAGTAAATATGTCGTGTCACGGTCTTACTGCTGAAATTGAAGAATCAGACAAGATACACGTTGACGTCGATGCAAAAcctatttataaacattttaatgaatttaacGAAGTATTAAACGATAGGtctaaaattaaagttaaaaaacgaaaaaaagatGTTAAAAAACGTAGTCTAAAACGCGGCAGGCCGAAAACTGAAAAGCGTATTAACACAATCAAACAATTGAATTCCAATAAGATAATAATAGATTATGCAAAATCAGCACGTTTTGATATTACGTTTTTAACGCCCGCTGAGCAGATTAAAGAGGTTGAAGACAAGAAGAGAGAAATAGTCAAGAACGGTCATAATTGCGAACAGTGCGGCAAGCATTTCAGAGATGTCCACACATTGGAACGACACACGAAATTGTACCATGTTTGGAAGCCAGGGGATTTCGTGTGCGACATATGCTCTTGCGTTTTCGAAAGAAAATTGACAATGAAATGCCATATTGAGTCTCACAGTTGGGTTTTTACGTGCCAAACGTGCGGTTTTAAGACGAACCATCAGAAGAGTTTGATGGCACATCGGAGTTTTCACGAAGGGAAGCAATACCCGTGTCAGTATTGCGATAAggtctttattaaaaaaacgacTTTTCTGTCGCATTTGAAGATGTTGCACGCTTCGGAATTGCCGTGGTGTAGACTCTGTGGGGAGTTCTTTGTTGGGGAGAGAGGGGTTGATAGGCATGTGAGGCTCACTCATAATACGGCTGAGGAGTTTCCTAACGCGTGTGGCAATTGTGACGGGAGGTTTAAAAGCGATACTGCGCTTGAAAGACACGCTGCTGTGCAAGgTTGCGACCTCCCCAGTTGCGCCCAATGCGGCGACTCTTTCCCCAACGACGCACTCCTCAAACATCATCTAGTTAAAAGACATTTCGCAAACGTCGTGCTAGAAAATCACGACTGTAGTCATTGTAATATCCGGTTCAATAATGCCGAAGCGCTGAGACAGCACGCGTGCGGTAATAAGGCATGCTGCGCGCAGTGCGGAGTGAGTTTTGAAAGTACGCAACTCCTTACGGAACATGTGTATTCGAAGCATGATATCTTTCGGTGTGAAGAGTGTGGTAAACAATTCACGAACTCCGGCTACTTCAAGAGCCACTTCGAGCTGAGGCACTCCGCTCGCCCGAGACGCAAGCGCGGGCCGCGGCCGCTCGCCGAGCGAGCACTCGAATACAAGAAGAGGGAGAAAAATGAGAAACCAGACAATAGAGAGAGAAAAGAAGAGTATCCCAAACAGACGGTGATCCGTAAGTGGCGTGTCGCGACCGAGGGGGACATGCTGATTGAGAAGTTGGTGGAAAATGGCGGCGCTGAGGGAGACGGCAGGAGAATTGCTCTTGTTTGCGAACTCTGTGGGAAGGGGTATCCGTCGGCGTCCCAGCTGGCCATTCACCAGCGGTCGCACTCCGCGGTGCTTCAGTTTTCGTGCGCCCACTGCAACAAGGGGTTCAAACAGAAAGCCACACTAAAGTCGCACGAGCGTGTACATACGGGCGAGCGTCCGTACAAATGCTCACAATGTTCAAAGACATTCAGGACTTACACCGGCCTCAACAGGCACTTCCTGATACACACGGGCGAGCGGAAACACGTGTGCGCAATGTGCGACAAGACGTTTCAGACGTCCACGACCGTCAAAACGCACATCAAGACCGCGCACCTCCACCTGCCGTGGCCGGCGCGGCACAACCGGAAACGGAAATGCACGCGGCCGGAAACGACGCGCACGTGA
Protein Sequence: MEQILMCRVCLTVEGKFSYIHDFSTAQAYESLIGYPLIPSDGYPQHLCSYCHRTIHKFVEFKARCVKVLEVLQRALVQGEMITKQYSHVLTSTCPDLKPRYIRTKTITIDITNSEPEMILVNEPTDLAEIDLETVKEEKDDDVNDMDEVNMSCHGLTAEIEESDKIHVDVDAKPIYKHFNEFNEVLNDRSKIKVKKRKKDVKKRSLKRGRPKTEKRINTIKQLNSNKIIIDYAKSARFDITFLTPAEQIKEVEDKKREIVKNGHNCEQCGKHFRDVHTLERHTKLYHVWKPGDFVCDICSCVFERKLTMKCHIESHSWVFTCQTCGFKTNHQKSLMAHRSFHEGKQYPCQYCDKVFIKKTTFLSHLKMLHASELPWCRLCGEFFVGERGVDRHVRLTHNTAEEFPNACGNCDGRFKSDTALERHAAVQGCDLPSCAQCGDSFPNDALLKHHLVKRHFANVVLENHDCSHCNIRFNNAEALRQHACGNKACCAQCGVSFESTQLLTEHVYSKHDIFRCEECGKQFTNSGYFKSHFELRHSARPRRKRGPRPLAERALEYKKREKNEKPDNRERKEEYPKQTVIRKWRVATEGDMLIEKLVENGGAEGDGRRIALVCELCGKGYPSASQLAIHQRSHSAVLQFSCAHCNKGFKQKATLKSHERVHTGERPYKCSQCSKTFRTYTGLNRHFLIHTGERKHVCAMCDKTFQTSTTVKTHIKTAHLHLPWPARHNRKRKCTRPETTRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -