Abis010683.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- ZFY
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000042.1:1597258-1603035[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00033 0.022 15.6 0.5 2 21 180 199 179 200 0.93 2 19 9.6 6.4e+02 1.6 1.0 3 23 206 225 205 226 0.73 3 19 1.9 1.3e+02 3.8 2.3 1 23 231 254 231 254 0.85 4 19 0.0017 0.11 13.4 0.5 2 23 260 281 259 281 0.95 5 19 9.2 6.2e+02 1.6 10.6 1 23 284 307 284 307 0.94 6 19 0.00056 0.037 14.9 0.4 1 23 321 344 321 344 0.95 7 19 0.00021 0.014 16.2 0.3 1 23 350 372 350 372 0.96 8 19 1.8 1.2e+02 3.8 0.4 1 23 406 429 406 429 0.87 9 19 0.00042 0.028 15.3 1.6 3 23 439 460 438 460 0.98 10 19 0.042 2.8 9.0 0.7 2 20 584 602 583 604 0.89 11 19 0.23 16 6.6 0.0 2 23 610 632 610 632 0.92 12 19 0.0011 0.072 14.0 0.8 3 23 639 660 638 660 0.98 13 19 1.1e-05 0.00074 20.2 0.4 2 23 666 687 665 687 0.96 14 19 1.1 76 4.5 1.5 2 21 691 710 691 711 0.91 15 19 1.3e-06 8.8e-05 23.2 0.4 1 23 737 760 737 760 0.95 16 19 0.0093 0.63 11.0 0.4 1 23 766 788 766 788 0.94 17 19 0.078 5.3 8.1 0.1 1 23 794 816 794 816 0.97 18 19 0.13 8.4 7.5 0.6 1 23 822 845 822 845 0.79 19 19 0.0082 0.55 11.2 2.5 1 23 851 874 851 874 0.96
Sequence Information
- Coding Sequence
- ATGGCGGTAACTGACACGCTTCCAAACCAACTCTGTTCAGGATGCGCAAACAGCGCTACATGCATCATACCCTTCATACAACTAGCGAAAGACTCCTCCAACCGTTGGAACCAAATAACCGACTATTTATTCACATTAGATGCGACAAATCCTAAAAGAGAGTTaaagaaaaggaaaaatatatatgtcaAAATAGGAGACGATATACAGACGCACGTGGACGAGCAACGAGGTGTGCCAAGAGGGATTTGCAAGGATTGCCTGCAAGAGGCCCTGGCTTCCTATCACTTCAGACAACTCTGCAAATCCTCCGCCGAACACTGGGATAATGCCTCAACTTTCCTCACCCATATCCAAGACCCAACGATGCATGACAAGTCTTATTACATCTTCTACAAGTCATCAGACTACAATTTTGTTACAGTAGTCAAAGATCAAGCGCAAAgtgttaaaaatacaaatgaagCTTTGCAACGACTTGTGGAATTTCGAGACCCTAAACCAAGAAAAACCAAAAAGAATTCAACTTTTAACTGCTCCTGCCCCGATTGCGGGAAAAAATTCAATAGCCCGTTACTTATGAACGTACATTTAAGGAACACTTTGAAAAGAATTTGCAACGAATGCGGAAAAATTATGCTGAAATCTAAATTGCCATTGCACATGTTGAAACAtcatgatattaaaatatttgattgcaGTATATGTCATAAACTTTTTGATGAAAGAAACAAAATGATATTGCATTCATTTAAAAGTCATAGTAATAAAAACACACAATGTGATATATGCAAGAAAGGTTTTGATTCATTCAGGTCGCTAAATGGCCATATGTATGCTCATTCTCTATTTCACTGCAAAAGCTGCTCAAAAAGTTTTGAAAATCTCAAATGCTACCGATACCATCAAGGGAAATGCCACAACAGTAAAGAAAGTGTCAAAATTGATGACGACACAAAATATACATGCGATTATTGCGGCTCTTCTTACGATAAGAAACCATCGCTGCGCATCcatattatacaaaaacattTGAATGTCTTACCCTACGTTTGCGAACTTTGTGGCAAACGAACATCGACAGTCGCTCATTTGCGTTCGCACGAAGCGGTTCACACTCAGAAGAGAAAGATATATGAATGTCATTGCGGCGCAAAGATGCGAACAGAGCTAGGTTTCCAGATGCACCAGCGTAtacacactggtgagaaaccttacgaaTGCGAGGAGTGCGGGGATAAGTTTCTATCGGCCTCTAGAAGGTTAGATCATATCAAACGTAGGCACAGAAGCACTGAGGACATGCCACACGGGTGTGACAAATGTCACGCGAGATTTATTAGGCCTTTCGAATTAAAGAGGCATTATTTGACTATGCACTATTCGCAGATTGAAGTAGCCCCAGCGCCTAGAACTATTAGGAGGAACAAACACTTGATAGTGACTGAAGAACCGCTAATTCCTCTCTGCATCTGCATCAGCTGCGTTTCCAGCGTCCTCGCCGCCCAAGAGTTcagaatttttgtaaaaaactcTCAAAAACTGTGGACTAAAGCTCTAAATTCTCTCAGTGGTCTACCAGATTCAGCGTCCCCTCCAGTCAAAACGCTTTGCGCTTTTATCAAACCTGATACGTTGGcgctacatacatataaaaattatacaggAGGTGATTCAAAGACTgtgttgaataaaataaaaagtcgtCTAACTAAGAAAAAACGTATAGTACGAACCGGCCCGGCATGCGATTGTCCAGATTGCGGCAAAAATTTCCTCAGCCCACATTATCTCGGCGTGCATCTAAGTAATAGCGGTCAAAAAGAAGTGTGTTCTGTTTGTGGAGTAGTTGTTTATAGAGGTAAAGATATGATTAAACATATGGATGAAGCACATGGGCAAAGTGTCGTTTTGTGTAAATATTGTCCACAGATTTTCAAAAGTGAATTACAAATGAGAAAACATATCAAAAAAGCGCATAGGTTCGGTGCGCTAACATGTAGCGATTGTGGCCGAACCTTCCCAAGAAAGGGCTCCTTCGAGGCTCATTCGCAAATGCACGCAGTCAGGACTTGTCGAGCTTGTGGCGTGCAGTTTACGAACCGAGCGTGCTATAGAGAACACAGGTCAAAATGTGAACCAGATGCGAAACCAGACGTAAAATCTTTACCACGAAACAAACGCTGCAATATTAGAGACCCAGCATATTTCACATGCGACTACTGTGGAAAAACTTACACATCGCGACCACAACTAAAGAACCATATCATATGGATTCATATGGACGTACGGCCGTACCAATGCATGTATTGCGAGAAAAGATTTTATACGGCGGGTAGAATGGCAGAACATACAGTAGTCCATACGCGCGAAAGAAATTTCGAATGCGACATTTGTGGCGCGAAATTAGTTTCTAAAATGGCCGCCGTATACCATAGGAGAAGGCATACTGGTGAAAAGCCTTATGAATGTAAAGACTGTGGCGAAAAGTTTTTGTCTGCATCGCGGCGGTCTGAACATGCTAAGCGAAGACACGGGAAAGGAATTAGGCATCAGTGTTTGCAGTGTCCAGCTAATTTTGTTAGGGCTTGTGAGTTGAGGAAACATGTTGAGAAATATCACAGTACACCGCATAATTTTATGGTTGCAGTCGAAGGATAA
- Protein Sequence
- MAVTDTLPNQLCSGCANSATCIIPFIQLAKDSSNRWNQITDYLFTLDATNPKRELKKRKNIYVKIGDDIQTHVDEQRGVPRGICKDCLQEALASYHFRQLCKSSAEHWDNASTFLTHIQDPTMHDKSYYIFYKSSDYNFVTVVKDQAQSVKNTNEALQRLVEFRDPKPRKTKKNSTFNCSCPDCGKKFNSPLLMNVHLRNTLKRICNECGKIMLKSKLPLHMLKHHDIKIFDCSICHKLFDERNKMILHSFKSHSNKNTQCDICKKGFDSFRSLNGHMYAHSLFHCKSCSKSFENLKCYRYHQGKCHNSKESVKIDDDTKYTCDYCGSSYDKKPSLRIHIIQKHLNVLPYVCELCGKRTSTVAHLRSHEAVHTQKRKIYECHCGAKMRTELGFQMHQRIHTGEKPYECEECGDKFLSASRRLDHIKRRHRSTEDMPHGCDKCHARFIRPFELKRHYLTMHYSQIEVAPAPRTIRRNKHLIVTEEPLIPLCICISCVSSVLAAQEFRIFVKNSQKLWTKALNSLSGLPDSASPPVKTLCAFIKPDTLALHTYKNYTGGDSKTVLNKIKSRLTKKKRIVRTGPACDCPDCGKNFLSPHYLGVHLSNSGQKEVCSVCGVVVYRGKDMIKHMDEAHGQSVVLCKYCPQIFKSELQMRKHIKKAHRFGALTCSDCGRTFPRKGSFEAHSQMHAVRTCRACGVQFTNRACYREHRSKCEPDAKPDVKSLPRNKRCNIRDPAYFTCDYCGKTYTSRPQLKNHIIWIHMDVRPYQCMYCEKRFYTAGRMAEHTVVHTRERNFECDICGAKLVSKMAAVYHRRRHTGEKPYECKDCGEKFLSASRRSEHAKRRHGKGIRHQCLQCPANFVRACELRKHVEKYHSTPHNFMVAVEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -