Abis003496.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000012.1:9025577-9033829[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00045 0.03 15.2 0.4 2 23 28 50 27 50 0.96 2 23 6.3e-05 0.0042 17.9 1.8 2 23 94 116 93 116 0.97 3 23 0.00051 0.034 15.0 0.5 1 23 166 189 166 189 0.97 4 23 0.00084 0.057 14.3 0.2 1 23 246 268 246 268 0.97 5 23 0.0033 0.22 12.5 3.6 2 23 280 301 279 301 0.96 6 23 0.22 15 6.7 2.1 2 23 313 334 312 334 0.96 7 23 0.0025 0.17 12.8 1.0 1 23 344 366 344 366 0.98 8 23 0.62 42 5.3 7.0 1 23 395 417 395 417 0.95 9 23 0.0017 0.11 13.4 4.6 1 23 428 450 428 450 0.97 10 23 4.5e-05 0.003 18.3 0.5 1 23 458 480 458 480 0.98 11 23 0.00038 0.026 15.4 0.8 2 23 500 522 499 522 0.97 12 23 0.23 15 6.7 0.4 1 23 540 562 540 562 0.93 13 23 0.09 6 7.9 3.7 1 23 569 591 569 591 0.97 14 23 0.0017 0.11 13.4 2.1 2 23 602 624 601 624 0.95 15 23 0.011 0.74 10.8 0.1 2 23 647 668 646 668 0.95 16 23 0.0025 0.17 12.8 1.7 2 23 749 770 748 770 0.95 17 23 0.79 53 5.0 3.1 5 23 780 798 778 798 0.94 18 23 0.0078 0.53 11.3 0.8 2 23 809 831 808 831 0.95 19 23 0.24 16 6.6 2.3 2 23 848 866 848 866 0.89 20 23 0.2 13 6.9 3.0 2 21 870 889 869 890 0.94 21 23 0.23 16 6.6 1.8 2 23 939 960 938 960 0.94 22 23 0.016 1 10.3 2.4 2 23 971 993 970 993 0.96 23 23 0.039 2.6 9.1 4.2 2 21 1031 1050 1030 1051 0.95
Sequence Information
- Coding Sequence
- ATGTCGGAAGTCCGGGCCAGCACAGGTGACGACATGGTTTCAGACACTAGCTACTCCGGCTATGTGCCACACGGGCCTAACAAGTGTCCCTACTGTATCAAATCCTTCTCATACAAAAAGGGTCTCGAAACACACATCGCCAAAGCACATTCCAACCTACCAGAACTACCTTTAGAAGTCAAAGTAGAGGTTCCGGCTGACAAGAACCCGTCAACTAGTCTTTTAACAGAAAAATACGCAAGCGATTCGGAGTCTAGTCAAGAAGAGGCAGAGGATTTAACGTGTGATATATGCGAGAAAATGTTCTCGTACAAACGTTTGCTACTGCAGCACAAACGTACCAAACACAACATGAGTTCCGGGCACAAGCGAGCGAAAATCAACCTTAAGGATTGTTCTGTGCGTTGCCTCATTTGCGACATTGAGATGAAAGTCAGTGCTGTTAATGAGCACAATCAGAAGCATATAACGGCTAATATAAAACCGAGGAATCTGTATACTTGTGCGCAATGCGGGGAGAAGTTTAAGGCGTGTAGTGGCCTAGCGAATCACATTAAGTTGATCCATCGGCTGAAGCAGGTACCGAAGCCGAAGGTGCCGAAGCTGCAGGGTGGATCGGAGCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGACGGAGCCCCTGGACGACATCCAGAGTCACAACGGCTTGGAGGTTCCGTCGGAAGCGGCGCCCCACGTGGACCTGCGCGGGTTCACGTGCCCCGTCTGCAGCAAGACGCTCGGCACGCTCATCTCGCTCAAACGACACGTCAACTGGCACAACAACGTCGGGAACAACATCGAGAGCAAGATGGAGTGCTTCGTTTGTAAAGAGACATTCCGGTTCAAGCGTCACTACAGGTTGCACATGAGCGTTCACTACAAGGACCCCAACATCGACCCCAAACACCTCACCTGCAGTCTCTGCAACCGCAAGAGCAAGCATCTCCGAGCGGCCCAGGCTCACATGAACTTCCACAAGCAAACACGCTTCCAGAACAAAGACTACCAATGCTCCATCTGCAAACGGGTATTCCAATACAGGAAAGTATATCTCTCACACATGGCCATACATTATAAACGAGGTGATAGCAGTCAGAATACTATAGTCGGTGATATCTTACCGGAGAATGCTGATAAAACTGCCTTTGACGGAAGCCACACGTGCCATCTGTGCGGTAAGGTCTGCGATTCGGAAAATTCACTCAAATGTCACATTAGTTGGCATAAATCTAAGACTTCGCTGTTCGGGAATAGACATGAATGCCATATTTGTCAGGTAAAGTTCACTAATAAAAGAAGATTGGAATACCACATTAGGGAACATTATGAAGATGAAAATGGTCCGTACAAATGTACCGTTTGCGGGAAGGGCTACATCGATGAGGAGTATTTCAAACGGCACGTCAAAGGCCACAATTTTGACCACCAATGTCACAAAAAGCGGATTGAGAAATTGCGGAAGGACAAAGTCAAGTGTCCGATTTGTACGCGGTTCTACCCGGACCTACTGCATTTGATCCGGCACATCAAGCGGACGCATCCGGAGAGTAAGATGATCAAAACTGATCCGGACGCGCCGCCGCCCATGTATTACTCGTGCAAGTTGTGCGCCAAGGTGTTCCTCGACCAGCGCAGGCTGCAGAGCCACGAGGAAGCACACTTGAGGAAGCCGGAGTTCTTCAAGTGCAAATTCTGTGGTAAGAAGACGATATCGCTGAAAAACCACAGGATTCACATCAAGGGACATTTGACCACGAAATTCTTGGACAATCCGCTCAAATGCACGCAGTGTGACGAGATGTTTATTAGGGGATACGATTTGCACCATCATTTACGCGACGTCCACAACATCGACGAGACGTGGATCGCGGACCGCAACGAGCAGGCTCTGACCGGCCCGCTCAAGGACTTGCAGTGTTCCGTATGTCTCAAAATCTTGGCCAGCAAAGGGAATTACGAGCGGCACATTGACTATCACAACTCTCTGAGGTGTAATTATTGCTTCGATTACTTCAGCTCGCTGAGGTTCCTAGAGGGCCATTTAGCATTCAGTTGCGATAAGAAGAAGCTGATCGGCGACACGGAACCCCATCCAAGGAAAATTAAATGCCACGTTTGCTACAAAGCCTTCCATCTGCAAGTCAAGTTAGACTGTCATCTGCGAACACAACACAACATCAAAGTGAATAAGGAAGCGTCATCCGATAGAAAAGATATTGTTTGCGATTATTGCTTCAAAGTGTTCGAAAATGAGTACTGTTTGAGTAGGCATAAGATCTATCATCGAACTATCGGATACTTTGGCTGTATCTACTGCAATAGGAAGTTTAATACGATGACTTTGTACAGGAAGCACAAGACGAGTCATACGTCGCAACTGAATGTTGACAACCCCACTAAGTGTGAACATTGTGACGAGACATTTGTCGCCTTCCGCGAGATGATCAGCCACATGAAGGAGGTCCACGGTGATGATAAGGAGTGGGTGGTCCTGCCAAAGGAGTCCATTGAAGAAGAGTGCCCCATCTGTAAGAAAGTGTTCTTCAATCTGCACAGGCACTTGGATTATCATGAGGAAAATAAATGCAAGAAATGTGGAGAGTACTTCTTCTCACGAACGGACTTTGATAATCATTTATGTAGTATTGAGAGTGACGACGAAACCGCTGAAAGATTCGATGGTACTCTGGAGGCAAAGTACCAAGAGTGCAACTTCTGTTTCAAGCCAATAACTAGAGTGAGCTCGGAATTGAAACATGTTAAGATACATAGAGGTTCGGGCTCGATATCTTGCCGGTTCTGTCCGCACAAGTTCAAAACGATGGACGCGTTCAACATTCACGCATTCTCTCACAGAAgtagaaaatacaataaaaagccGATAAAGTGTCGCAAATGTAATGAGCACTTCGTCAAGTACGGGCCGTTTATGAAGCACATGAAGTCAGTGCACAAGTCCACTCAGAAGATGCACTACCGAGCCATCGTGAAGGCGGAACCGTGCGTGGTCTGCGGCGACGACTTCCCCAATCTACACAACCATTATCGAGCGCACTTACAGAACCAATGCCAAAACTGCAAAAAGTACTTTACGTCTTCGAGACTATTCTCGCGACACCAGTGCGACGTCGAAGATGCAGACCCATCGAAAGTGTTCACGTGCGATGAGAATCTCTTAGTCCTTATAAATAATTACGTTCCTAAAGACGAGAAAGACGACGAAAAATACTACGGCCATGACGACCAAGAGGAAGTGGATCAGAACGAGGAAGAGACGGAGGAGATAAGAGAATACATTAATGTGGGGGATATAAAGACGATGGTCGAGAGTCAGGACGAGGAAAGCCAGGAGGCGCAAGTAGTGGCGCCCGATCCGGACGAAAGGAGCCTGCATTTGATGGCGCAGTCGCCGATCATATCGGACGTACTGTCTCTATATCAGAACCAGCAGGCAGCGCAGGATGACGACGTCGTCCATCTTACTGATGACGACTCCATGGATATTGATATCAGTATTCCAGTTATAACGATCGATTGA
- Protein Sequence
- MSEVRASTGDDMVSDTSYSGYVPHGPNKCPYCIKSFSYKKGLETHIAKAHSNLPELPLEVKVEVPADKNPSTSLLTEKYASDSESSQEEAEDLTCDICEKMFSYKRLLLQHKRTKHNMSSGHKRAKINLKDCSVRCLICDIEMKVSAVNEHNQKHITANIKPRNLYTCAQCGEKFKACSGLANHIKLIHRLKQVPKPKVPKLQGGSELADFCEVVVTKTEPLDDIQSHNGLEVPSEAAPHVDLRGFTCPVCSKTLGTLISLKRHVNWHNNVGNNIESKMECFVCKETFRFKRHYRLHMSVHYKDPNIDPKHLTCSLCNRKSKHLRAAQAHMNFHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKRGDSSQNTIVGDILPENADKTAFDGSHTCHLCGKVCDSENSLKCHISWHKSKTSLFGNRHECHICQVKFTNKRRLEYHIREHYEDENGPYKCTVCGKGYIDEEYFKRHVKGHNFDHQCHKKRIEKLRKDKVKCPICTRFYPDLLHLIRHIKRTHPESKMIKTDPDAPPPMYYSCKLCAKVFLDQRRLQSHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTTKFLDNPLKCTQCDEMFIRGYDLHHHLRDVHNIDETWIADRNEQALTGPLKDLQCSVCLKILASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEPHPRKIKCHVCYKAFHLQVKLDCHLRTQHNIKVNKEASSDRKDIVCDYCFKVFENEYCLSRHKIYHRTIGYFGCIYCNRKFNTMTLYRKHKTSHTSQLNVDNPTKCEHCDETFVAFREMISHMKEVHGDDKEWVVLPKESIEEECPICKKVFFNLHRHLDYHEENKCKKCGEYFFSRTDFDNHLCSIESDDETAERFDGTLEAKYQECNFCFKPITRVSSELKHVKIHRGSGSISCRFCPHKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCNEHFVKYGPFMKHMKSVHKSTQKMHYRAIVKAEPCVVCGDDFPNLHNHYRAHLQNQCQNCKKYFTSSRLFSRHQCDVEDADPSKVFTCDENLLVLINNYVPKDEKDDEKYYGHDDQEEVDQNEEETEEIREYINVGDIKTMVESQDEESQEAQVVAPDPDERSLHLMAQSPIISDVLSLYQNQQAAQDDDVVHLTDDDSMDIDISIPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -