Abis021214.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000173.1:1177256-1180382[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.49 33 5.6 1.1 3 20 361 381 360 383 0.89 2 12 0.16 10 7.2 0.1 2 23 392 413 392 413 0.87 3 12 0.7 47 5.1 0.1 3 23 422 442 420 442 0.92 4 12 1.4e-06 9.1e-05 23.1 0.7 2 23 448 469 448 469 0.98 5 12 0.0067 0.45 11.5 4.2 1 23 475 497 475 497 0.98 6 12 0.0023 0.16 12.9 0.2 1 20 501 520 501 522 0.94 7 12 0.00022 0.014 16.2 0.2 1 23 555 578 555 578 0.95 8 12 3.6e-05 0.0024 18.6 0.2 3 23 587 607 586 607 0.99 9 12 1.8e-05 0.0012 19.6 0.3 1 23 618 640 618 640 0.98 10 12 8.1e-05 0.0054 17.5 4.5 1 23 646 668 646 668 0.98 11 12 0.003 0.2 12.6 0.3 3 23 676 696 674 696 0.98 12 12 2.1e-05 0.0014 19.4 0.8 1 23 702 725 702 725 0.96
Sequence Information
- Coding Sequence
- ATGGATACGTGGTCCAATTTGTGTCGATGTTGCCTATCGCCAGATTCCGAAGTGTCAATATTAGGAGATCAAAATGTCGAGGAAAAATTCTTGGAAACCACTTCTGTTGAGGTTAAGGCTGATGATGGCCTACCACAAAAGCTTTGTTCTGACTGCTACAGTATAATGACTTCTGCTTACCAGTTTCGAAAACAATGCATCAAAATGGATAGCGAGTTAAAAGTACAACTAAATGCACTATTAGCCCAAGTACAAGAAGAAACCTACACACAAGAAGAAGAACATCAGGGCTCAAATAATCAAAATGATTCAGATGAAGAATTGGCTATAGCTAATGATCCTTTAAAACAGCTGGAGATGATAATCAAAAAAGAAccaagtgatagtgatgatgattgCTATTATGTAGTAGTCATTGATGATGATAAAGATACGGAAGATAATGTTAGTGAAAATGTTAAAGATACTATTACAGGAGTAAAAATCAAACAAGAAGTGGTAGATCCACCAGAACTGAAAGAAAAGCAAGTGCAACAGTTAGCTTCTGAACAGCCCACTGGATTTGATAACCACCTGAATGCTCTAGATATGTTCATATTGAGTAATCCTAAAATTCCCCTCAATGTACCAGCTACAATTCTTGAAAATGAGGAGGAAGGGCAAGATGTCGATGATAATGTTAATGTTAATGGCCAGGCTGAAGACATTGAAGCACCAGTTGGTGATACAACATCACAAACTCAAATTCTATCTACTGTAGAAGATTCTGTAGATGGCAACAATCATATACAGACTATTACTGGGGATATTATCACTGATTTGAATCCCAAAAATTTCATTAAGATCATGACTACCACTGGTACTGATGGTGGAACAATACTTTTGAAATCTGGCGAGGAAATGGAGTACTTCACAGGAAGAGAATTGGTTGCCAGCAATGATGGAGAACAGGAAGAGGTTATTTACTGTAATGCTGATGACTCATCACAATAtcaaatattgaaatatgatGATACTACAGAATTAGTGATTGAATATTCTGATGATGGCCAAATAGCAACTATTGTTCAACAAGATGATTGTAAATTCTTATGTGAATGCGGAGAACAGTTTGATGATTTAGCAGattatgaaaaacatcattacaAATGTGCTAGTGCCAATCTGCAAAATGTGTGCAACTTATGTGGTAAAGGTTTTGAGTCTACTGAGATTCTAACTGGTCACACACTACTTCATAAGAACACAGGACCAATTATAGCTTGTCCATTTTGCGATCAACCTATTAAAAGAAATACTCTAACCCAACATATCAAGTATGGACACAACAATATCAAACCAAAATGCAgtgtttgtttaaaaacttttgccaatccaaataatttaaaacgtCACATGATGATTCATAGTGGATTAAAAGAATTTGAGTGTGATATATGCTTTAGAAGATTCCACCAGAAAATCACAATGCAAACTCATAGATTGACACATGTAAATCCATTTTCATGCAACCAATGCGATCTAacatttgaaaacaaaattaaattgattgcTCATAAAGGATCAAATGATTGTTCGAAATCAAAGGTGTTAAAGGTAAAAGACGAATTAATGAAAACTATCAAACAGGAGGTGACAACAAATCTTGGTAAACTTTTAGGTTATGCTTGttcattgtgtaaaaaaatgttttctgttGAATCCGCTTTGGAACAGCATGTGGAGAGCACTCACATAGTCGATCCAACAGAGTTGCTGTGCTCAGAATGTGGTGAAGTCTTGCCATCGAAGAAAGACTTGCAAACGCATATGATGACCCATAAAGGTATGAGGTGTAAAATGCTGAAGAGATTTGAATGCAGCATTTGTGGTAAAGGGTGTTCGAGCCAAGCGATGTTGATAATGCACGAACGAGTTCACACTAATGAGAGACCGTTTCCTTGTCAACTTTGCTCTTTGAGATTTAAGACGAAAACTCATTTACGTACTCATCAACTCACTCATACTAGAGAAAAGAAGTTTGGTTGTTCTGTTTGCATGAAGTTCTTTGCGTTGAAGGGCAACCTTGTTGTACACTTACGCACACATACTGGAGAGCGCCCGTATGTGTGTTCATTGTGTGGAGAAGCATTTATAGATTCCAAGTATCTCAAGAAGCACAAGTTAAAGAAGCACGCTATTGAAAATTTACCATggaataaatactaa
- Protein Sequence
- MDTWSNLCRCCLSPDSEVSILGDQNVEEKFLETTSVEVKADDGLPQKLCSDCYSIMTSAYQFRKQCIKMDSELKVQLNALLAQVQEETYTQEEEHQGSNNQNDSDEELAIANDPLKQLEMIIKKEPSDSDDDCYYVVVIDDDKDTEDNVSENVKDTITGVKIKQEVVDPPELKEKQVQQLASEQPTGFDNHLNALDMFILSNPKIPLNVPATILENEEEGQDVDDNVNVNGQAEDIEAPVGDTTSQTQILSTVEDSVDGNNHIQTITGDIITDLNPKNFIKIMTTTGTDGGTILLKSGEEMEYFTGRELVASNDGEQEEVIYCNADDSSQYQILKYDDTTELVIEYSDDGQIATIVQQDDCKFLCECGEQFDDLADYEKHHYKCASANLQNVCNLCGKGFESTEILTGHTLLHKNTGPIIACPFCDQPIKRNTLTQHIKYGHNNIKPKCSVCLKTFANPNNLKRHMMIHSGLKEFECDICFRRFHQKITMQTHRLTHVNPFSCNQCDLTFENKIKLIAHKGSNDCSKSKVLKVKDELMKTIKQEVTTNLGKLLGYACSLCKKMFSVESALEQHVESTHIVDPTELLCSECGEVLPSKKDLQTHMMTHKGMRCKMLKRFECSICGKGCSSQAMLIMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSLCGEAFIDSKYLKKHKLKKHAIENLPWNKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720622;
- 90% Identity
- -
- 80% Identity
- -