Basic Information

Insect: Apomyelois bistriatella
Gene Symbol: -
Assembly: GCA_947044225.1
Location: CAMRHB010000167.1:992926-1001325[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.7e-05 0.0039 18.0 4.0 1 23 221 243 221 243 0.98

2 10 0.1 6.8 7.8 5.0 1 23 249 273 249 273 0.88

3 10 7.6e-06 0.00051 20.7 1.9 1 23 279 301 279 301 0.99

4 10 3.8e-05 0.0025 18.6 1.6 1 23 307 329 307 329 0.98

5 10 7.1e-05 0.0048 17.7 1.7 1 23 335 357 335 357 0.98

6 10 1.1e-05 0.00074 20.2 0.8 1 23 363 385 363 385 0.98

7 10 0.00011 0.0072 17.1 1.4 1 23 391 413 391 413 0.99

8 10 0.00014 0.0096 16.8 3.7 1 23 419 441 419 441 0.98

9 10 5.5e-06 0.00037 21.2 1.3 1 23 447 469 447 469 0.98

10 10 1.4e-06 9.4e-05 23.1 1.9 1 23 475 497 475 497 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.7e-05	0.0039	18.0	4.0	1	23	221	243	221	243	0.98
2	10	0.1	6.8	7.8	5.0	1	23	249	273	249	273	0.88
3	10	7.6e-06	0.00051	20.7	1.9	1	23	279	301	279	301	0.99
4	10	3.8e-05	0.0025	18.6	1.6	1	23	307	329	307	329	0.98
5	10	7.1e-05	0.0048	17.7	1.7	1	23	335	357	335	357	0.98
6	10	1.1e-05	0.00074	20.2	0.8	1	23	363	385	363	385	0.98
7	10	0.00011	0.0072	17.1	1.4	1	23	391	413	391	413	0.99
8	10	0.00014	0.0096	16.8	3.7	1	23	419	441	419	441	0.98
9	10	5.5e-06	0.00037	21.2	1.3	1	23	447	469	447	469	0.98
10	10	1.4e-06	9.4e-05	23.1	1.9	1	23	475	497	475	497	0.99

Sequence Information

Coding Sequence: ATGTGTTCGGCGAAGATTTTGCCTGCTGCCTGCCGTGTCTGCCTGGCGGTGGACGTGCGGTTGTTGACCATCGCCGGCTCCCTAAAGCAGGTGTATCAGAAACTTACCGACACTGAACTCCACTCGGCTGACGGGAGGCCCGTGGCGGCCTGCTATATCTGCTACGCTCAGCTCAACAAGTGCCGAAAGTTGATGCTGACCTCCGCCCGAGCAGAGAAAGTGCTGGATACTATATTTGACAGTCATTGTGagGTTTCAGGGACAATATTGTCTCAAATCCGGCAGGCCACTAATCTCTGTGGATCGCTAGGCAAGTCTAGAACTGAAAATTATGGCGCACTGGATCTAAGTGACAACGCTCGGCCTGTTTTATATTCTCCCATTTCCGAGGGAAATGGCGACTTGTCAGATGATTTATCCGGACAAGCACAGTTCGCAGCCGGCGGGGTTAATGAAGAAACCGCCAGTGCCGACGTCGACGACAAAAGTCCGTTGAGGAGTCTTCTAGCGGCGACTGCAGTGGGGGAAGAGCTGCAGCAAGatggcGCTCCTACTCACACAGCAGGAGCTGTGGAACAGTACGCAGCTGAAGAAGAAGTAATTAACACGAATCTTCAAACGAGTCCTGAATGTCCACGAACAGAGAATGGCGAGCGACGTCACCAATGTAATATTTGCCAACGTAGGTTCGCATTAAAGAGACAATTGACAAAACACTTAACAACACACACcggcgagaaaccttacgaatgtGACGTTTGCCGTCGTCGTTTTAGTACAAAGTGTTCAGCTCAATTAAAAGATCATATTAGAATACATACAGGTGAGAAACCATATCAATGTGAAATTTGTAAACGTCGATTCAGAATAAAGGAAAATATGAAAGTTCATTTGAAGACACATTCTAACGAGAAAACATTTGAATGCAATGTTTGTCAACGTATGTTTCTTAGGAAGACAAATTTAGAATCTCATTTAAAAACACAcacaggcgagaaaccttttgaatgtaatgtCTGTGGCCATCGTTTTGGCGGTAAAAGAAACTTAACTCTCCACCTCAAAAATCATACTGGTGAGAGACCGTTTGAATGCAATATTTGTCAACTTACGTTTCGTGAAGAATCTCAtttgaaaatacatttaataGTACACACGGGCGAGAAACCATTCGAATGTGATATTTGTAAATCTCGATATACTAAAAAGGCTTACTTGGTCACTCATTTGAGAACACACACTGGTGTAAAACCGTTCGAATGTAATATTTGCAAGCGGCGATTCAATACTAGGCACACTTTAGGTATTCATTCGAGAACTCATACgggcgagaaaccttacgaatgtGACGTGTGTCAACGTAGATTTAACGACAGAAGGAACTTAAATACTCATTCAAGGattcacactggtgagaaaccgtATCAGTGTAATATTTGCCAGCGTCAGTTCAGGCAGGGTAGTAATTTACGTACTCATGTAAAAACGCATTCGTCTAAGTCAGACGACTTAAAAAAGGGCACATCCTTAAAACATAATTAG
Protein Sequence: MCSAKILPAACRVCLAVDVRLLTIAGSLKQVYQKLTDTELHSADGRPVAACYICYAQLNKCRKLMLTSARAEKVLDTIFDSHCEVSGTILSQIRQATNLCGSLGKSRTENYGALDLSDNARPVLYSPISEGNGDLSDDLSGQAQFAAGGVNEETASADVDDKSPLRSLLAATAVGEELQQDGAPTHTAGAVEQYAAEEEVINTNLQTSPECPRTENGERRHQCNICQRRFALKRQLTKHLTTHTGEKPYECDVCRRRFSTKCSAQLKDHIRIHTGEKPYQCEICKRRFRIKENMKVHLKTHSNEKTFECNVCQRMFLRKTNLESHLKTHTGEKPFECNVCGHRFGGKRNLTLHLKNHTGERPFECNICQLTFREESHLKIHLIVHTGEKPFECDICKSRYTKKAYLVTHLRTHTGVKPFECNICKRRFNTRHTLGIHSRTHTGEKPYECDVCQRRFNDRRNLNTHSRIHTGEKPYQCNICQRQFRQGSNLRTHVKTHSSKSDDLKKGTSLKHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -