Abis012318.2
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000055.1:2112391-2121408[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.01 0.69 10.9 0.9 3 23 542 563 541 563 0.94 2 23 0.046 3.1 8.9 0.6 1 22 944 965 944 965 0.95 3 23 7 4.7e+02 2.0 0.3 1 22 1007 1028 1007 1030 0.82 4 23 0.0049 0.33 11.9 1.0 3 21 1041 1059 1040 1060 0.95 5 23 0.19 12 6.9 0.2 2 23 1068 1090 1067 1090 0.91 6 23 0.054 3.6 8.6 0.4 3 23 1111 1132 1109 1132 0.95 7 23 0.00057 0.038 14.9 2.4 1 23 1138 1161 1138 1161 0.95 8 23 0.13 8.7 7.4 0.0 1 23 1183 1206 1183 1206 0.90 9 23 0.019 1.3 10.0 3.4 1 23 1211 1233 1211 1233 0.97 10 23 0.0067 0.45 11.5 0.2 1 23 1239 1262 1239 1262 0.95 11 23 0.0024 0.16 12.9 1.3 1 23 1278 1300 1278 1300 0.97 12 23 0.00018 0.012 16.4 1.8 1 23 1348 1371 1348 1371 0.97 13 23 0.0011 0.072 14.0 1.5 1 23 1432 1455 1432 1455 0.96 14 23 0.0011 0.077 13.9 2.1 2 23 1483 1505 1482 1505 0.95 15 23 0.09 6.1 7.9 0.1 2 23 1511 1533 1510 1533 0.93 16 23 0.01 0.69 10.9 0.2 1 21 1577 1597 1577 1598 0.95 17 23 0.0013 0.086 13.8 0.6 1 23 1608 1630 1608 1630 0.93 18 23 8.4e-05 0.0056 17.5 0.3 2 23 1727 1749 1727 1749 0.93 19 23 1.9e-07 1.2e-05 25.8 1.1 3 23 1756 1776 1755 1776 0.98 20 23 0.001 0.07 14.0 0.6 1 23 1793 1815 1793 1816 0.95 21 23 0.19 13 6.9 0.0 1 23 1838 1860 1838 1860 0.97 22 23 0.028 1.9 9.5 0.6 1 23 1866 1889 1866 1889 0.95 23 23 0.00015 0.01 16.7 0.5 1 23 1897 1920 1897 1920 0.97
Sequence Information
- Coding Sequence
- atgAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCCCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACACGGAATCTCCCGTCCTCGCCAGGAAAATCAAGGATTGCGTCTCTGTACAGatatgcGAAAATGACGACCTGCCAACTAATGTCTGCAGAAAATGTATGGACAATGTGAATAACTGGCACATATTTAAGTCAGTATGTGAAAGGACACAAAACAAACTAGAATCTCTGATTAAAAAAGATGGCAACCAACTAGAAGAGGTGAAAATCAAAAGTGAACCATTATTTGATGAAGCATATGATGATGGAGTTGTTATTGATGGGTCATATCCTGATGGTGAaAATGCCAGCAGTTCTCATAAAATACAGCCAGAAGGCCCACCAATCTTGGCTTCATTGGGACTCACACCAAGGAGTGATAAGAAATATATAGATCCTCGAATGGACTGGGCTCGCGTGCATGCAATCTTGGACTTAGTGCAAGAGGATGAAGTCATAGATTCTTTGCAGAATACGGAAGAGAGTGATACATTATATCATTCAGATCATGATTCTGATGAGACTGACCTCAAACATGACATCGCTGACATTTACATTGATTGCAAATTCGGATATGTATGCAAGAATGAGGAAATTCTTTCGAAAACACCAAAATATTCTCTGTTACATAGAACGGAAAGAATGAAAGAAGTCAGTAGGATAAGAAAACGAAAAGTAGAACATATTCCATTCTGCCATCAGCCAAAATTAGCATGGCAGAAATTTTTCTCAGAGGATTTGCTGGAGCTTATTGTGACATCAACAAATTATGCTATAGAGAAACATGGACACAGTATTTCAATGTGCACAAACATAAgcgaaataaaaactttgaTTGGTGTATTGTACCTTCATGGTATATTACGTCCTACTCAACAGAAATTAAGTGACCTCTGGAGCAGCACTTGTGGTGTGCCATGTATAAgaaatgcaataaaatatgaCCGAATGAAATTCCTTCtgcaaaatatttgttttgataaagACGCTGAAGAGGATATTATGCAATTTGACATTATGAGACGTATTCGgaaagtttttgaaatatttgcattAAACTGCAGGACAGCATTCAATGCAACTGGCAATGCTATGGTTATTGATGAAATCCTTGTACCAGTTTTTGGGCCTTGTCCATTCAGATATAACAATGATAAGATACCACTAAAAAATGGACTCAAGTTAGTGTTGTTGGTTGATCCTTTAACATTTTATGTGAATAATTTGGATGTCATAACTGATCCGCATTTTAAATCTGCAGAGATTGTTATGAAGCTTGTCCAACACCTGGCTGGTACCAGGAAAACCATAGTCATGAACAGCTGGTATATGTCAATGGCCTTGATTAATCATTTaaagaatgaatatgaattgtTTACTCTAGCAGCAGGTGTGGAAAGTGAAAAAGAAGAAAtggaagaagacgaagagatGAACGAACCGGGTCAGTCGTTTTCCAACGTGCCCTCTATGCCTGAGGTTTCTATCACAGTGATGCGGCCGACCGGCGAGACCTTGCACTCCAAACAAGGCATACAAGTTCTCGCCTCCAAGGACTGCCTCGTCTGTGGCCGCTCCTACAGATACTCCCACAATGCCAGGCGACACGAACTCTCAGCTCACAACTTCGACAGGTACACTAACAAAGTATCACACAAAAAGTCTTTTGCACACATGCAACCTAAACTAAGACCGAATCCATTCAACCCTAAAGCCCGACTGATGCCGAGCCATAAAATGCACCTTATACCTAAACCCGTGCCACAGTTGATGCCACACAAAATGACTAACCCACCACAACCAGTTCTTATTAAAAAAGGGCCACAAAACAATTTACCTTATCCACTCCGCATCAAGGCGTTAAAGGACttgcaaataaagaaaagagAACCGCAAATGCTTAAAACTTTACTTACATCGAAACCGGAGATTTTAACTTCAGAGATTGACATAGGAAATTCAGAACCAGAAAGCCCCGAAACATTAGTATCTGAACCTGAAATAGCCTCTTTTCAAGTGGAGGCTATATTATCTGAGCCTGATGCTTTCGAACATCCGCAAGGCGAAGAAGACTGTGAAGGAGATGAGGAAGGGGATGGAAATAATCAAAGTCAGAATTATGATACTGTTGATATGGACTCTGAAAATGAAATCGAAATTGCTCGACAACAAGAGAATGAGGAAGATCACAATTTAGATAATGACAATGATGATCATATGCAGCATGAAGACGAGGATAATGTTGATGCAGCTCCAAGTGACACTGATAAAGATCATCTTGAGGAAAATGGTGAACATGAGGAAATtgtagaaaaagaagaaaatattgtGGGCAAAGTTGAAGTAGAAGGAGAAAGTGGGGATGTGGAGGGCGAGGTTGATAGAGAAAATGAGAAACAAGAAGTGAACCATGACGAAAATGAAGACAATGATGATGACATGCCTCCCATGGGTTTGGCACCTGTTGTTGAGATAAACGAGGACTTGCAAAACAATTCATTTAATAGCGAGGTAAATGAAGAAGAGGAACTAGACGAAACTGCCGAAGATACTGCTGAACTCAATGAAACTGAAGAAGAACCAGTCAAAGAGTTAGACCCTAATAAACTTTATGTGACTAAAACTCAACGAGATTTCATTGAGAAATACAAAGATATCATTCAACAGATCAATACAAAAGTATGTTTATGTTGTGACCGGGAACATCCGCGCCGAAAAGCTGTCATCCAACATTTACAGAAAAATGGTCATAAAGTCCCAAAACATACATGTTATAATTGTGTGGTCACCTTTTCACATATTGGTGCTCTACTAAGCCACATGAGATCAAACACTTGTACAGATTTGTGGAAAATTATTTACAACGAAAGTGGCATTACGGATGACTTGGTTCTAGATGACGAACCCAAGGGAGCCAAAGTTCAATACAAAGACATTTTCAATGCGCGATCATATGCTTGCAAATTGTGTCCTGCAAAATTCCAATTGAAACAATTTATTATGAAGCATGTGTTAGATGTTCATGAAGATGGCCAGTCTAGAGTTCCTAATATTTGTGTCCATTGTGGAACGAGGTTTAAGGAAAGGAGTACAATTAAGAAACATATACGTAATGGAGACTGTACAGTGTACATTTCTTGCGACTTATGTTCGGAAAAGTTTTCGAACATGCAGACTTTCAATGACCATGCAATGGCCATACATGCAGGAAGTTTCGATCAGAATGATAGCCAAAGTAAGTGCTTGGATGGCCGGCCCACGGATTGTTCACTTTGTGGAAAGAAGAATAGTAGTTATCCTAATCTGATAAAACATTTGAAACTAGTACACAACGAAGAAAAGCCGCATTATTGCAAACATTGCGACGAAAAATTCGAGCAGGCTTCTGACCTCGATCAGCATATTTATTCAGTTCATACAGACAGAGGTGTGACTGAACCTGACATGTCACTTGTGAAAGAAGAAGCTGAAGAATATCATTATTCTTGCACAGAATGTAATGCTATTTTCGAAACCGTCGATGCTTGGACTGATCATCAGGTGGCCGAGCATAACCAAGTGGCGCACCACTGTGATCAGTGCGAGAAAAAGTTCTTACGACCGTCGGAACTTGCTGAACACAAAAATACTCATTTGCGCGTAAAATTCTATCCATGCAACATATGCAGTAACTCATATAGTACGCCTCAAAAGCTGTCAGAGCACGTACAACAAGTCCACCCAGGAGTTGGAACTGGGGTAGCATTACAACCTTTGGAGTCTGAATTCTTCTGCGATATTTGTATAAGATCCTTTAAGAGTCGCCAAGCGTACTCTAACCATATGCGTATTCACGCCAAAGTACCAACAACGAATAGAAAGCCTGGTGACCCTAAAGGGTTTTCACCACAAATTATAGGCAAACCTATTAAGCAGTTCCCAAATATTcaagcaaactttgtttataAGCCAAATTGTAATGTTCCTAATGCTCCTTACTCGTGTGATATTTGTGGCAAAGGCTTTATGCACAAGAAAAATATATGGAAACATAAGAAGGTGTTACATGCGGATATACTCAATGATAGGAATGACAGTGAAGAAAACACTATGCAAGCTTCTACAGAAGAAGACGATTACAATGTAGACGAAAATGGTGCCCTTTTATCGACACCACAGttcaatagttttaattttgcaaACTTTGCCAACAACGTTCAACAAGTGCCACAGGAGGATCCGATGCCTTACTCTTGCGAACTTTGTTATAAGAGATTCCCGCTTAGATCAAGTTTGTGGAAACACAAACGTGCTAAACACGGAATCGTCAATCCAAGTGCTGGTGGAGAAGCTATGACACCACCCGTAGTTGGACAGCAATCTGAGGGAAGCAGCAGGTCCAGTTGcacaatttgtaaaataacaTTCTCCGACAAGAAGTCTTACTATCGCCATAGAAAGAATGTGCACAAAACCGCAACACAAATGTGTAAAATATGTGGCAAACCATTAAATTCGACATTGGAACTTTATGAGCATCTGAAAGCGGCACACGCTCGCGAACTGCTAGGATACAATGCCAGCCAGGGGTCTAGTAAGCCGCAGGAAGTGAAACAGGAATTGGAAGCAGACTATGAGAATGATCAAGATTCGATCGATCCTACCGTAGACTACCAAGCGCGCTATCCTTGCGATACGTGTGGCAAACAATTCGTCGGGTTATTAGCGTTGCAGAATCATCAATGCATAAATCAAGTTCAATCACAGCCGCAGACTTTCGATTGTGAGATTTGTCACAAGAGTTACACCTCTATCGCGGCGTTAAAGAGCCACCGCGGCTGGCATTTGCGTTCTCCTGACGGAAAAGCGGCTGCCAACAACTCCGGCTTGTGGATGCCGCAGAACAAGGTGACCAACAAGGTCAGCAAGCATGAGGTGGTGGATCCGGTCCAGTTGGCGCGAGTGCAGCTCACGCCTTCCACCCCCACGCCGTCTTCTGCCGCTGCCCCCTCAATCGCTGCCAAACGGAGACTGCCGCCCGAAGTGGAGGTCACCGTCGTAAACCCCAATAAAAAAATGCGTTCCGACGACTCCATAGAACTAGAACAGCAGAGCGGCGCGATGGAGGACAGATATTGCACCATCTGCGACAAAGAGTTTACGAAGCGAGCGGCGTACCAACGCCACATGGAAGAGGTTCACATGCCGAACTCCGTATTTTGTCCCGTGTGCGACAAGAGTTTCACGAGGAAGTCCACTTTGATCGTGCACATGAAGAAGCATTACGAAGGCGGCCAAGGCAGTTCTAGCGGGAACCAGGTGGAGGACGAGTACCCGTGCGACGTTTGCGGCACTCAGTTCGACAGTGAGAACGCATTGCGGACGCACAAGGCGCGACATCACGGCGAGGAGGAGTCGGAGGAGTCCGAGGACGACGGCAGCGTGCCGTTCCCTCAGCCCGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGGGTTGCGACGCCGCGCGACTTGATCGCTCACAGGACGATGCACGCGACGCCCACCAAATTCTTCTGCAATATCTGTAAAGTATACTTCGCTAGAGCGCTGGACCTCTCGTCGCATACGCGGGCGCGACACGCCGATAACGAGAAAGTGTTTTTCCCTTGTGCCATGTGTGATCGCTTCTACATGAATAAGAAGAGTTTGCAAAGACACATCGAGACGGCGCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDTESPVLARKIKDCVSVQICENDDLPTNVCRKCMDNVNNWHIFKSVCERTQNKLESLIKKDGNQLEEVKIKSEPLFDEAYDDGVVIDGSYPDGENASSSHKIQPEGPPILASLGLTPRSDKKYIDPRMDWARVHAILDLVQEDEVIDSLQNTEESDTLYHSDHDSDETDLKHDIADIYIDCKFGYVCKNEEILSKTPKYSLLHRTERMKEVSRIRKRKVEHIPFCHQPKLAWQKFFSEDLLELIVTSTNYAIEKHGHSISMCTNISEIKTLIGVLYLHGILRPTQQKLSDLWSSTCGVPCIRNAIKYDRMKFLLQNICFDKDAEEDIMQFDIMRRIRKVFEIFALNCRTAFNATGNAMVIDEILVPVFGPCPFRYNNDKIPLKNGLKLVLLVDPLTFYVNNLDVITDPHFKSAEIVMKLVQHLAGTRKTIVMNSWYMSMALINHLKNEYELFTLAAGVESEKEEMEEDEEMNEPGQSFSNVPSMPEVSITVMRPTGETLHSKQGIQVLASKDCLVCGRSYRYSHNARRHELSAHNFDRYTNKVSHKKSFAHMQPKLRPNPFNPKARLMPSHKMHLIPKPVPQLMPHKMTNPPQPVLIKKGPQNNLPYPLRIKALKDLQIKKREPQMLKTLLTSKPEILTSEIDIGNSEPESPETLVSEPEIASFQVEAILSEPDAFEHPQGEEDCEGDEEGDGNNQSQNYDTVDMDSENEIEIARQQENEEDHNLDNDNDDHMQHEDEDNVDAAPSDTDKDHLEENGEHEEIVEKEENIVGKVEVEGESGDVEGEVDRENEKQEVNHDENEDNDDDMPPMGLAPVVEINEDLQNNSFNSEVNEEEELDETAEDTAELNETEEEPVKELDPNKLYVTKTQRDFIEKYKDIIQQINTKVCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNESGITDDLVLDDEPKGAKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPNICVHCGTRFKERSTIKKHIRNGDCTVYISCDLCSEKFSNMQTFNDHAMAIHAGSFDQNDSQSKCLDGRPTDCSLCGKKNSSYPNLIKHLKLVHNEEKPHYCKHCDEKFEQASDLDQHIYSVHTDRGVTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQVHPGVGTGVALQPLESEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFSPQIIGKPIKQFPNIQANFVYKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMQASTEEDDYNVDENGALLSTPQFNSFNFANFANNVQQVPQEDPMPYSCELCYKRFPLRSSLWKHKRAKHGIVNPSAGGEAMTPPVVGQQSEGSSRSSCTICKITFSDKKSYYRHRKNVHKTATQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGSSKPQEVKQELEADYENDQDSIDPTVDYQARYPCDTCGKQFVGLLALQNHQCINQVQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTNKVSKHEVVDPVQLARVQLTPSTPTPSSAAAPSIAAKRRLPPEVEVTVVNPNKKMRSDDSIELEQQSGAMEDRYCTICDKEFTKRAAYQRHMEEVHMPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGQGSSSGNQVEDEYPCDVCGTQFDSENALRTHKARHHGEEESEESEDDGSVPFPQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIETAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012228;
- 90% Identity
- -
- 80% Identity
- -