Abis010696.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apomyelois bistriatella
Gene Symbol
-
Assembly
GCA_947044225.1
Location
CAMRHB010000042.1:1764478-1770451[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 47 0.0061 0.41 11.6 1.5 1 23 58 80 58 80 0.98
2 47 1.4 91 4.2 0.0 3 23 109 130 107 130 0.87
3 47 0.0066 0.45 11.5 0.7 2 23 151 173 150 173 0.94
4 47 0.0047 0.32 12.0 7.5 1 23 178 200 178 201 0.93
5 47 0.00028 0.019 15.8 4.3 1 23 205 228 205 228 0.97
6 47 1.8 1.2e+02 3.8 0.2 2 20 260 278 259 280 0.91
7 47 0.0034 0.23 12.4 1.3 1 23 329 352 329 352 0.91
8 47 1.6 1.1e+02 4.0 0.2 2 23 381 403 380 403 0.95
9 47 0.0017 0.12 13.3 2.8 1 23 425 448 425 448 0.96
10 47 4.6e-05 0.0031 18.3 0.4 3 23 455 475 453 476 0.94
11 47 0.0027 0.18 12.7 0.4 1 23 481 504 481 504 0.94
12 47 0.0044 0.3 12.1 0.6 2 23 510 532 509 532 0.95
13 47 0.001 0.068 14.1 1.9 1 23 536 559 536 559 0.97
14 47 0.015 1 10.3 0.6 3 23 567 587 565 587 0.96
15 47 0.004 0.27 12.2 1.5 1 23 593 615 593 615 0.98
16 47 0.005 0.34 11.9 3.4 1 23 653 675 653 675 0.98
17 47 0.43 29 5.8 0.0 3 23 704 725 702 725 0.90
18 47 0.0054 0.36 11.8 1.9 2 23 746 768 745 768 0.96
19 47 0.00036 0.025 15.5 0.2 1 23 773 796 773 796 0.96
20 47 0.0016 0.11 13.4 1.3 1 23 801 824 801 824 0.97
21 47 0.0001 0.0067 17.2 2.0 2 23 827 849 827 849 0.96
22 47 0.0016 0.11 13.5 0.4 2 22 856 876 855 876 0.95
23 47 0.033 2.2 9.3 1.3 1 23 932 955 932 955 0.93
24 47 0.35 23 6.1 0.1 2 23 983 1005 982 1005 0.94
25 47 0.27 18 6.4 0.1 3 23 1029 1051 1028 1051 0.95
26 47 0.0037 0.25 12.3 0.4 3 23 1058 1079 1056 1079 0.94
27 47 0.0044 0.29 12.1 0.2 1 20 1084 1103 1084 1107 0.91
28 47 0.35 24 6.1 0.2 2 23 1113 1135 1112 1135 0.90
29 47 0.02 1.3 10.0 3.7 2 23 1140 1162 1139 1162 0.97
30 47 0.0045 0.3 12.0 1.8 2 23 1169 1190 1168 1190 0.96
31 47 0.041 2.7 9.0 0.9 1 23 1196 1218 1196 1218 0.96
32 47 0.05 3.4 8.7 2.0 1 23 1259 1281 1259 1281 0.95
33 47 1.1 74 4.5 0.0 3 21 1310 1328 1308 1331 0.86
34 47 0.74 50 5.1 1.9 1 23 1351 1374 1351 1374 0.95
35 47 1.1e-05 0.00076 20.2 0.2 1 23 1379 1402 1379 1402 0.96
36 47 0.00015 0.01 16.7 0.8 1 23 1407 1430 1407 1430 0.98
37 47 7.2e-05 0.0048 17.7 1.9 2 23 1433 1455 1433 1455 0.97
38 47 0.2 13 6.9 1.3 2 21 1462 1481 1461 1482 0.94
39 47 0.0068 0.46 11.5 1.8 1 23 1539 1562 1539 1562 0.94
40 47 5.3 3.6e+02 2.4 0.0 2 23 1590 1612 1589 1612 0.91
41 47 0.16 11 7.1 0.0 2 23 1635 1658 1634 1658 0.93
42 47 0.00012 0.0083 16.9 0.7 3 23 1665 1686 1664 1686 0.94
43 47 0.0041 0.28 12.1 2.5 2 23 1691 1713 1690 1713 0.94
44 47 0.0077 0.52 11.3 1.0 3 23 1720 1741 1718 1741 0.96
45 47 2.4e-05 0.0016 19.2 5.0 1 23 1745 1768 1745 1768 0.97
46 47 0.00073 0.049 14.5 0.3 2 23 1775 1796 1774 1796 0.96
47 47 4.8e-06 0.00033 21.4 0.5 1 23 1802 1824 1802 1824 0.98

Sequence Information

Coding Sequence
ATGATAACATTTAGTATCGAGAGCCGTTGCCCTCATATTCTCATAAAAATTCTCATCTTTTCAGATGAAAATGGGCCGGCAAACGTACTGAATGCTAACACGCTGAGAAGACGTAATCTACTCACGTTGTTGAACAACACGTCTCTGATTCCTTTCAAATGGCGTGGGAAATATATGTGTTTTTACTGCGGAAATGACGTCACCGATTACACAGATCTCAAAAAACATACGAAATCTCATGGACGGTGCACAGACAAAGAGCGGTCAATTAGGCTTGTCAGGTCTGGAGATGAAGAAGTTAAAATTGACGTTTCCGACGTCATTTGTGAAATATGTGATAAGAAACTAAAAGATATTGAAGACGCGATAGATCATTTAACGGAACAACATAGTTTGCCATTTGATAGAGACGTAGAACTAGCAATCTCTAGTTATAGTTTAGTAGATCTAAAATGTTTGTATTGCGATGAATCGTTCGATTTTTTCAGCAAACTTATAACCCATGTCAATTTGACTCATCCCAACAACTGTTTCTTGTGTCACATGTGCAACCAgaggtttaataaaaaaagagatttGCACGCCCACTTAAGAATTCACCATAAAACAGGGTTCAGTTGTAATAAATGcaatcaaagttttaaaaacttTACTGATTTTCAGAAACATAAGAGAAGTGCACATGTTTCAGGTTGTAATCTATGCTTTGAAACGTTTTCATGTGATAGCAAAAGACTAAGTCATATGAAAACTGAGCATGATTTGAACACTTTGATACAATGTCTTTTCTGTAGTAAGACTCTTACTACAAAAATAGCTTTCCTAGTACACGCTTCAAAATGTAACATGAAACGAGATGACGAACATTTAGACGATAATGTTAATGATAATGACAAAAAAACAACAGTCATTGATATAAGAAAGAATGTAGCTTGTGTTCTGAACATGTCTACCGCAGTGCCTTTCAAATTTTTCTTACATTCTTTTCGGTGTTTCTATTGCTCAAAAGATTTCCAAGACAGCGACCTGCTAAAACAACACACAGTTTTGGAACATCCCCACTGTGACACAAATATTCAAGGGCTTAGGCTGCGAAATAGGAAAGACGGGGTTAGAATAAAAATTGATATATCAAATTTATCTTGCAAGTTGTGTTTCGAACAAATCAATGATTTGAAAACTCTTATAGACCATTTAATAACTGAGCATAAAGCTCAGTACGATAAGTCTGTTGACAATCACCTGGAGTCATACAAATTGATCAAAGGTAACTACCCTTGTCCATATTGCCCAGAAACGTGCAGGTATTTCGGGAATTTACTAAGACACGTGAGTAGTTGCCACGCGGAGAATAAAATAATCTGCGTATACTGTGGCATGTCCTTCCGGACTGATCCCAACTTGAGGGCTCACATTAACCGCCATCACAAACCTTACAGTCACAAGTGTACAACTTGCGGCGTAGGGTTTCCTACGAATGATATGCTCCTGATCCACCGAGGCCGCATGCACGGCACTAAAATATCAACGTGCACCGTGTGTTCAGAGAAGTTTTCAACTAGAAGCTTAATGGGAAAGCATTTGATGAATGCGCACAATGTAGGGCACAAATGCAATTATTGCGGTAAACTATTTGCGAAGAACTCTGTAATGGAGAGTCATGTTAGGAGGCTCCACCTGAAAGAGAAGAATGTCAATTGTTCTGTGTGTTCAGAGAGGTTTTTTGACTTATCCCGCTTGAGGATGCATATGGTTAAACACGTTGGCGAGCGGAACTTCCAATGTGACATTTGTAACAAGAAATTTTTGTGGAAGAAAAATTTGAGAGTCCATATGACAATGCATGATAAAAACGCGCCCGCGCGTAATGACGGCTCCGCATCCAAACGCAGGAggaataatttacaaatattattcaACAACACTACGATCTTTCCGTTCAAATGGCGGAGCAATTTTCAATGTTTCTACTGCGCTAAACCTTATAGAGAATACTCAGAATTTAAAAAACACACCAAATCTCACGGGCAATGCACTACGAAGGATTATTCGTTGAAAAATATTACTGGAAATCATATCGAAATCAAAGTAGACGTATCAgaaattaattgtaatgtttgcGACGAACCATACAATGATCTAGCTGAAATCACAGACCATCTCATCGATAATCATAACCTGAAATACGATAAAGACGTGGATATCCCCTACCAGGCATATAGACTCCAAGATTTGAAATGTTTGTATTGTAATCAACAGTTTTCTTATTTTGGTTACTTGATACACCACGTCAATACATTACATCCTCAGGATAATTTCGCTTGCGTCGAGTGTGGggctaattttaataaaaagagatACCTAGCGTTGCATATGAGGAGTGGTCATCGTAAGGACGGCTATAACTGTGATCAATGCCAATTGAAATTTGTGACTTACAACTTACTAAGGAGCCACCAACAAAGGGCGCATTTTAGAAAATGTAAAAACTGCGATCTCTGTTTTGATTCTCAGGCACTTTTAAGAAAGCACATACGAGCTGATCATCCGGAAGATGGAAATGTGAAATGCTCGTATTGCGGTAGGGAATGTCGAAACACTGACGGTCTGGCTGTACATATAAGAAAGTGCCGATTGAAGTTTGAAAAACAGAAACCGGACGTGTTATTTACTCAGAATAATGTTCCAATGATTACGAAATctaagaaaaatacaaatctaatGCAAATCAGGCGAAACATACAAAGCGTTCTTAATATGTCCACGGCAGTGCCTTTTAGTTTCTTCAATAGATTTTCTTGTTTCTATTGTTCGAAGAAATTCGGTGAATTCGACAGTTTGAAGGAACATACTATTCTGGATCATCCCGTATGTGATATTAAGTCTAAATCAATGATGACATTTAAAGGGAATAATCTAAGCGTCAAGGTGGATGTAAGTTTTCTGTCTTGCAAAGTATGTTCACAATCTATGTCTGACTTGGAAACTTTGATCGATCATCTGATATCGGAGCATAAAGTCGACTACGACAAGTCGCTGCGTCATTGCTTAGAACCATACAAGATAGACAAGGACGGCGTGGCTTGTCCTCTGTGCCCTCAACAAGTATTCAGTTTCTTTGGCAGTCTGCTTAAACACATAAACAGTTCGCATAATGATAACAACATAATTTGCGTATTTTGTGGCATGTCTTTTAGAACTGAGACGAATATGCGTTCCCATGTGTCTCGATTACATAACCGCGATGGGTACAAATGTGCAATCTGCAATCTTGTGTTCAATTCGAGAGATTCTATGCAGTCGCACTCCGGTAACGTGCACGGCACCAAGATATCTAAATGTCCGCAGTGTTTAGAAGCGTTCTcatctaaaaatataatgagGAGACATTTGATAGACGTTCATGGTACAGGGCAGAAGTGTCCTCATTGCGGGAAGCTGTTTCCGAAAAAATGCTTAATGCTCGACCACGTGCGCAGCACTCACTTGAAAGAGAGAAACGTGCAGTGCAACATGTGCCAGCAGAAGTTTTTCAACGAACGCCTTCTGAAAAAACACTTGGTAAAACATTTTGGAGAACGGAATTTCCACTGCGATATTTGCGGAAAGCAGTTTCTTTGGAAGAGAAACCTTATTGTCCATATCgagaaacatttattttcagatgaaTACGCACCTGGCCCTTACGATGGCTGCGCGTCTGAACGCAGAAGGAAAAACTTAAGAATCCTCTTCAACAACACGActataatcccgttcaaatggCGGGGCAAGTTCCTCTGTTTCTACTGCGCCAAAAGCTATTCAGAGTACCCCGAATTCAGAAAGCACACCAAATCTCACGGGCCGTGCACTACCAAGGATTACGCTCTAAAAGTAATTAAAGGCAACCACATAGAAATCAAGGTGGACGTTTCGGAAATAATTTGCGATATATGTAACGAACCCTTTGGGAACATGTCGGAAATTGTCGATCATCTTGTCGGTAAGCATAATATGGAATACGATAAGAGCGTAGACATCCCGTTCCAAGCCTACAGATTGACAGATTTCAAATGCTTGTGTTGTGATCAGCAATTCTCTTATTTCGGTAGTCTGGTCAGCCATGTCAATATCATGCACCCTCAGAACAGTTTTATCTGCGACGATTGTGGCGCCACTTTTAACAAGAAGAGAGACTTGGCAGTGCACATGAGGAATCTTCATCGGCAGGGCGGGTACCCTTGCGATCAGTGTACGGAAAACTTCGACACTTATTACTCACTTAGAACACATCAGAACACGGCTCATTTCAGGAAATGTAAAAATTGTAACTTGCATTTCATTTCTCCCGCGCTTCTGCAAAAGCATATGAGATCTGAACATCCAGAGGATGGGAATGTAAAGTGTTCGTTTTGCGGCAAAGAGTGCCATTCTACCAACGGTCTGGCCCAGCATATGGCCCGGTGTAAAGTAAAACTAATCGCGCAGCCTGACGACCCGCCGATTTTCGACTCCTTCCCCACAGACGTCGGTATAAAACCGAAGAAAAAACAGAATATATTACAGATCAGACAGAACATACAGTGCGTGCTGAACATGTCCACCGCCATTCCATTTAAATTCTTCTCCAAATTCTCCTGCTTTTACTGCTCTAAAAAGTTTACGGAATTTGAAGAGCTCAAAGAGCACACTTTATTGGAGCATCCGGTGTGTGAACTCAAATCTAAATGCATGAAGAAATGTAAGGGAGAAAGGATTACTGTCAAAATAGATATCGCGTGCTTATCTTGTAAAATATGTTCACAGCCCATGTCGGAATTGGACGCTCTGATAGACCATTTGATATTAGAACATAAAGCTAATTACGACAAGTCGTTCACTCGTTGTTTCGAGCCGTTTAAGATTATCAAGGATAATCTGCCCTGTCCCGTTTGCCCCGAGCGTGTGTTCAGATATTTCGCGACATTGCTGAAACATTTGAACGCTGAACACAGCAACAATAACAGGATATGCGATTTCTGCGGTCGATGTTTCCGAAACGTTGCCAATTTGAAAGTGCACATATCATACGCGCATACAGGTTGTTGTGAGTGCACTATTTGCGGAGCGAAATATAAGAACCAGTGGTGTCTAGCCCGTCACAGAGCTAAAGTTCACAACGCAAAAGACTACGGATGTACGAAATGCCCTGAGAAGTTCCCTTCGGCGTACCATAGACAGAAGCATTTAATAAAGGCTCACGATATAGGCCACAAGTGCACGTATTGCGGTAGGATGTTTACTAGAAACTCCTTTATGAAAGACCATATCAGGAGGACACATTTGAGGGAGAAAAACGTACCTTGTTCGGTTTGTAACGAGAGGTTCTTCGACAATTATTTATTGCGGATGCATATGGTGAAGCACGACGGAGAGAGAAAGTTCACTTGTGATGTTTGTGGTAAAGCTTTTTTGAGGCGGAGCAACTTGCAGTCACACATGGACATGCATAAGAAATATGGGCACGTGTCTGTGCCAATTTAA
Protein Sequence
MITFSIESRCPHILIKILIFSDENGPANVLNANTLRRRNLLTLLNNTSLIPFKWRGKYMCFYCGNDVTDYTDLKKHTKSHGRCTDKERSIRLVRSGDEEVKIDVSDVICEICDKKLKDIEDAIDHLTEQHSLPFDRDVELAISSYSLVDLKCLYCDESFDFFSKLITHVNLTHPNNCFLCHMCNQRFNKKRDLHAHLRIHHKTGFSCNKCNQSFKNFTDFQKHKRSAHVSGCNLCFETFSCDSKRLSHMKTEHDLNTLIQCLFCSKTLTTKIAFLVHASKCNMKRDDEHLDDNVNDNDKKTTVIDIRKNVACVLNMSTAVPFKFFLHSFRCFYCSKDFQDSDLLKQHTVLEHPHCDTNIQGLRLRNRKDGVRIKIDISNLSCKLCFEQINDLKTLIDHLITEHKAQYDKSVDNHLESYKLIKGNYPCPYCPETCRYFGNLLRHVSSCHAENKIICVYCGMSFRTDPNLRAHINRHHKPYSHKCTTCGVGFPTNDMLLIHRGRMHGTKISTCTVCSEKFSTRSLMGKHLMNAHNVGHKCNYCGKLFAKNSVMESHVRRLHLKEKNVNCSVCSERFFDLSRLRMHMVKHVGERNFQCDICNKKFLWKKNLRVHMTMHDKNAPARNDGSASKRRRNNLQILFNNTTIFPFKWRSNFQCFYCAKPYREYSEFKKHTKSHGQCTTKDYSLKNITGNHIEIKVDVSEINCNVCDEPYNDLAEITDHLIDNHNLKYDKDVDIPYQAYRLQDLKCLYCNQQFSYFGYLIHHVNTLHPQDNFACVECGANFNKKRYLALHMRSGHRKDGYNCDQCQLKFVTYNLLRSHQQRAHFRKCKNCDLCFDSQALLRKHIRADHPEDGNVKCSYCGRECRNTDGLAVHIRKCRLKFEKQKPDVLFTQNNVPMITKSKKNTNLMQIRRNIQSVLNMSTAVPFSFFNRFSCFYCSKKFGEFDSLKEHTILDHPVCDIKSKSMMTFKGNNLSVKVDVSFLSCKVCSQSMSDLETLIDHLISEHKVDYDKSLRHCLEPYKIDKDGVACPLCPQQVFSFFGSLLKHINSSHNDNNIICVFCGMSFRTETNMRSHVSRLHNRDGYKCAICNLVFNSRDSMQSHSGNVHGTKISKCPQCLEAFSSKNIMRRHLIDVHGTGQKCPHCGKLFPKKCLMLDHVRSTHLKERNVQCNMCQQKFFNERLLKKHLVKHFGERNFHCDICGKQFLWKRNLIVHIEKHLFSDEYAPGPYDGCASERRRKNLRILFNNTTIIPFKWRGKFLCFYCAKSYSEYPEFRKHTKSHGPCTTKDYALKVIKGNHIEIKVDVSEIICDICNEPFGNMSEIVDHLVGKHNMEYDKSVDIPFQAYRLTDFKCLCCDQQFSYFGSLVSHVNIMHPQNSFICDDCGATFNKKRDLAVHMRNLHRQGGYPCDQCTENFDTYYSLRTHQNTAHFRKCKNCNLHFISPALLQKHMRSEHPEDGNVKCSFCGKECHSTNGLAQHMARCKVKLIAQPDDPPIFDSFPTDVGIKPKKKQNILQIRQNIQCVLNMSTAIPFKFFSKFSCFYCSKKFTEFEELKEHTLLEHPVCELKSKCMKKCKGERITVKIDIACLSCKICSQPMSELDALIDHLILEHKANYDKSFTRCFEPFKIIKDNLPCPVCPERVFRYFATLLKHLNAEHSNNNRICDFCGRCFRNVANLKVHISYAHTGCCECTICGAKYKNQWCLARHRAKVHNAKDYGCTKCPEKFPSAYHRQKHLIKAHDIGHKCTYCGRMFTRNSFMKDHIRRTHLREKNVPCSVCNERFFDNYLLRMHMVKHDGERKFTCDVCGKAFLRRSNLQSHMDMHKKYGHVSVPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-