Abis021545.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000229.1:24270-25319[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 6.1e-05 23.1 0.0 6 40 20 54 17 59 0.80 2 2 8.8 3.1e+03 -1.6 0.0 14 22 137 144 126 145 0.64
Sequence Information
- Coding Sequence
- ATGTCGGGAAATCCTAACAAGAACCGTTTAAAGGCAAAATGGAGTCAAAGTTCACTAGAATTGGCATTTCGTCTTGTGCATGATGGAGTTGGAATTAGGAAAGCCGCACGAGACACCGGTATTCCTTTTTCTACTCTCCAAGAgagaattaaaaatgaaaataaagagtCACCAAGATTAGGACGAACAACAGTATTCAGTAAAGTCCAAGAAACAGATATGGCTGATCAAATCAAATTGTTGGCTAAAGTATTTTATGGTTGCACTCCCCTTAATGTTAGAAAGATGGCATATGAATATGCCGAAAGTAATAATATACCacacaatttcaataaaacgCTCAaattggctggaagagattggCTAAAGGGTTTCTGTAGAAGAAACAAATTATCGGCACGTAAAGCTGAGGGAACAAGTATCAATAGAGCGACGGCTTTTAACAAACAAGAAGTTACTATATTCTTCAAATTGCTAGAGAATTTGATGGAGAAATATAAATTCTTACCAAGGAACATATACAACGTTGATGAGACGGGAGTATCCACAGTTCAAGAACCTGGGAAAATAATCACCGAAAAAGGACAAAAGCGTGTGGGCTCAAAAACCAGCGGTGAAAGAGGCAGAAACGTTACAGCGGTTTGCGCCATGAGTGCTACAGGGACATATATTCCCCCAATGCTAATATATCCACGTCAAAGGCATTCAGTTAATTTAGAAGTAGACGGACCTCGTGGAGCCATTTACAAATGTTCTAATAATGGTTGGATCAATGAAGATTTATTTGCGGACTGGCTGAAACATTTCGCTGACCACGCAAAACCCTCAGAAAGAGAGCTGGTTCTACTTATATTAGACAACCATTCTAGCCACATATCTTTAACGGCCTATGAGTTCTGCAAAGCTAACAACATTGTAATGTTATCATTACCACCACATAGCTCACACAGGATCCAGCCCTTGGATGTGACTGTGTATGGGCCATTGAAGACGGCTTATAAACAAGAGTGCAATTTGTTAATGACTTCATTAACAAATTGCACTCTTTGA
- Protein Sequence
- MSGNPNKNRLKAKWSQSSLELAFRLVHDGVGIRKAARDTGIPFSTLQERIKNENKESPRLGRTTVFSKVQETDMADQIKLLAKVFYGCTPLNVRKMAYEYAESNNIPHNFNKTLKLAGRDWLKGFCRRNKLSARKAEGTSINRATAFNKQEVTIFFKLLENLMEKYKFLPRNIYNVDETGVSTVQEPGKIITEKGQKRVGSKTSGERGRNVTAVCAMSATGTYIPPMLIYPRQRHSVNLEVDGPRGAIYKCSNNGWINEDLFADWLKHFADHAKPSERELVLLILDNHSSHISLTAYEFCKANNIVMLSLPPHSSHRIQPLDVTVYGPLKTAYKQECNLLMTSLTNCTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -