Abis009199.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000031.1:1814832-1816313[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.6e-09 3.3e-06 27.1 0.0 1 37 14 50 14 56 0.95 2 3 0.97 3.4e+02 1.5 0.0 15 24 128 137 126 138 0.80 3 3 7.8 2.7e+03 -1.4 0.0 18 28 293 303 293 303 0.89
Sequence Information
- Coding Sequence
- ATGGCGCGGTACAAATCCAGAGGTATACGAGGCAAATGGACCGAAGACAACATGATAAAGGCGTTAGCGGCGGTAAAACGCGGCGTGATGAAAGTTTATACTGCctcaaaacattttaatataccGAGACGTACACTGAAGAGATATCTCACGGATAATAAGAAAGAAAAGTCATCACTAGGAAGAAAACCGTTACTCAGTAAAGAGCAAGAAAATGACCTTGAAGCTCGGATTATGCGCTTGTGTAATGTTGGGTATCCCCTCACTCCACGTGTATTAAGGACCAGTGTGAAGACCTTCTGCAACATGAACAACATACCCGTATCAAGCAACAGTGCTATGATTGGCCGTGATTGGCTGAGGGGTTTCCTCAAACGTCATAAAGGCTTAAGCCAAAGAAAAGCGCAAAACCTTAACCCAGCAAGAGCTCAAAAGCTCAACAAAATAGTAGTGGCTGATTATTTTGAAAAACTCCGTAAGGTCTTGGAAGACAACAATTTACTGAATAGCCCAGAACGAATATTTAATATTGATGAGAAAGGGTGTCAGTTAAATCTTCATAAAGCTCCTCAAGTTTTAGCTCAACGAGGTGCAAAGAGGGTGCATATAGTAGGTCAGGAACATGCTGAAAATGTGACAGTAGTATCGTGTGGCAATGCTTTGGGTCAAGCTGTGCCGcccatgattttatttaaaggaAAGCGGATGAAAGGAGAGTGGAAAGACTCATTACCAAACGGAACAAATGTCCAAATGACTCCCAAAGGAAGTATGAACATTGCTACTTTTGTTGAATGGATACACCATCTAGCCAAATACAAACTTCCTGGACCATGTGTCGTGCTGTTTGATGGAGCAAAATGTCACCTGGATTACTCCATCGTAGAAGCTgctgataaatttaatataaagctATTTTGCCTGCCCAGTAACACGACTCACGAACTCCAACCAATGGACAAGTCAGTGTTTCGCTCATTTGAGTACTTCTGGGATGAGGAAGTGTTAAAGTATTGGGCGCATCACGAAGATAGAAGAATCACAAAACACAGATTCGGTCTCATATTTTCAAAAGTATGGAACAAAGCTATGACGCCCGCCAACATCAAAGCTGGTTTTGAAGCTACTGGAATATATCCGTTTGACCCGACAAAAATTCCTGAAGAAGCTTACGCGCCAAGTATTCCTACTCATGTATCGATACCTGAAGAATCTGATAATCCAGCAACAAAAGATTCCAGTGACAGCGAAGATGATATACCACTGGCGGCGTTTGTTTCTTCAACAAATAGAGATTCTACCACGTCTTGCTCATCTGGATCTGTAGGCAAAACACAAAGGCCTTCAGTCCTGACAGATGAAGATCAACTCCCAATCCCTAGTTCCTCTAAGTGTACGGCTACTAAAAATTTAATCCTTGGTCGATCCGAGATTTCTCCCGAAGATAAGACTGTTCAGGATTTCGTGAAACtgcttctttaa
- Protein Sequence
- MARYKSRGIRGKWTEDNMIKALAAVKRGVMKVYTASKHFNIPRRTLKRYLTDNKKEKSSLGRKPLLSKEQENDLEARIMRLCNVGYPLTPRVLRTSVKTFCNMNNIPVSSNSAMIGRDWLRGFLKRHKGLSQRKAQNLNPARAQKLNKIVVADYFEKLRKVLEDNNLLNSPERIFNIDEKGCQLNLHKAPQVLAQRGAKRVHIVGQEHAENVTVVSCGNALGQAVPPMILFKGKRMKGEWKDSLPNGTNVQMTPKGSMNIATFVEWIHHLAKYKLPGPCVVLFDGAKCHLDYSIVEAADKFNIKLFCLPSNTTHELQPMDKSVFRSFEYFWDEEVLKYWAHHEDRRITKHRFGLIFSKVWNKAMTPANIKAGFEATGIYPFDPTKIPEEAYAPSIPTHVSIPEESDNPATKDSSDSEDDIPLAAFVSSTNRDSTTSCSSGSVGKTQRPSVLTDEDQLPIPSSSKCTATKNLILGRSEISPEDKTVQDFVKLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146341;
- 90% Identity
- iTF_00146341;
- 80% Identity
- -