Abis008338.1
Basic Information
- Insect
- Apomyelois bistriatella
- Gene Symbol
- -
- Assembly
- GCA_947044225.1
- Location
- CAMRHB010000026.1:2186902-2188137[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-10 1.3e-07 31.7 0.0 2 36 18 52 17 59 0.88 2 2 8.7 3e+03 -1.6 0.1 29 38 241 250 241 253 0.83
Sequence Information
- Coding Sequence
- ATGGGACGGTATCGAAAGAAAATTGGGTCACGGCCATACCGTAACTACTCCAATGAAGCGGTTGAAAACGCAGTGGCTTCGGTGCGGAAAGGTATGTCGATCAGAAAAGCTGCAGAAAAATATAGTGTTCCACCAGCAACTGTACAGAGAAAAGTATGTTGTAAGCATATGAAGAAAGTTGGAAGACCCACAGTTTTTTCAATTGAAgatgaaaatataattgttgAAGCCTTAATTCTTTGCGGGAAATGGGGATTTCCTATAACAGCTTTTGACTTAACGCTTATTGTGAAGCACTACCTTGACACAAAGGGAAAGACTGAACCTAGATTTAAGAATAATTTGCCAGGCAGATTCTGGCTGAAAGGATTTTTAGACCGAAACAAACATGAAATTTCATACAAGTTTTGTGAAAACATTAAAAGAGCAAGAGCTGCAGTTAATCCTGAAATGATATCAGATTATTTTGATAATCTGATGATTAGCTTGGAGGGAGTAAGACCAGAAGCAATTgtgaattttgatgaaactaactTTACCGACGATCCTGGGAAAACAAAAGTATTAGTAAGAAGAGGTTTCAAAAGTCCAAAAAATATCATTGATGCTTCCAAGTCTAGCACATCGGTTATGTTTGCAGGATCAGCATCAGGAGTTTTATTACCAATTTACGTGGTATATAAAGCTGAGCACCTTTACGATTCTTGGTTAACAGGAGGGCCAGCTAATACATTATATAATCGAACAAGAAGCGGTTGGTTTGACAGCACAACGTTTGAGGACTGGTTTTTCAAAGTAGTTGTACCATATTTCAATTCTGTAGGTGAAGGTCCGAAAGCAATACTGGGAGATAACCTGGCTAGTCATCTGTCTGTAAAGGTTATACAGAAATGTGCGGAATCGAATATTCGTTTCATATTTCTCCCTGCAAATAGTTCACACCTAACCCAACCGCTCGATGTCGCTTACTTCCGTCCACTAAAAGCGATATGGCGAAAAACTTTATTAGAATGGAAACAGAAAACCAGGGGCTGCATTCCTAAAGATCAGTTCCCGCGACTTTTAAAACGATCGTTAGATCAATTGTTGACATCTTCAGAGAATTTGAAGTCAGGTTTTCGTGCAGCTGGGATTTGCCctctaaacaaacaaacagttttgGCCAAGCTTCCCCTTGAACTCCAAAAGATAACAGCGCTTCTAAAGAATGGGCGAGGGCATTCGaaagttttttaa
- Protein Sequence
- MGRYRKKIGSRPYRNYSNEAVENAVASVRKGMSIRKAAEKYSVPPATVQRKVCCKHMKKVGRPTVFSIEDENIIVEALILCGKWGFPITAFDLTLIVKHYLDTKGKTEPRFKNNLPGRFWLKGFLDRNKHEISYKFCENIKRARAAVNPEMISDYFDNLMISLEGVRPEAIVNFDETNFTDDPGKTKVLVRRGFKSPKNIIDASKSSTSVMFAGSASGVLLPIYVVYKAEHLYDSWLTGGPANTLYNRTRSGWFDSTTFEDWFFKVVVPYFNSVGEGPKAILGDNLASHLSVKVIQKCAESNIRFIFLPANSSHLTQPLDVAYFRPLKAIWRKTLLEWKQKTRGCIPKDQFPRLLKRSLDQLLTSSENLKSGFRAAGICPLNKQTVLAKLPLELQKITALLKNGRGHSKVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_01334691; iTF_01334692;
- 80% Identity
- -