Basic Information

Gene Symbol
opa1
Assembly
GCA_009739505.2
Location
CM019174.2:2492760-2626585[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0024 16 5.8 18.5 4 18 1625 1639 1613 1640 0.90
2 10 1.5e-07 0.00097 19.2 16.0 1 18 1676 1693 1676 1694 0.97
3 10 0.002 13 6.0 21.9 1 19 1739 1757 1739 1757 0.99
4 10 3.2e-08 0.00021 21.4 12.7 1 18 1798 1819 1798 1820 0.88
5 10 0.04 2.6e+02 1.9 9.7 1 11 1860 1870 1860 1871 0.96
6 10 1.5e-08 9.6e-05 22.4 14.8 1 18 1887 1904 1887 1905 0.97
7 10 3 2e+04 -8.4 11.1 10 19 1952 1962 1944 1962 0.68
8 10 1.4 9e+03 -3.0 0.2 9 14 1980 1985 1979 1985 0.81
9 10 0.0059 38 4.5 12.3 1 16 1998 2012 1998 2022 0.86
10 10 1.4 9.2e+03 -3.1 18.0 3 18 2031 2050 2030 2051 0.87

Sequence Information

Coding Sequence
ATGTACGTTCTTCGGGGTACCTTCGGGTACGCCGTTCCGAGAAGGACGAAGTTGGTGCCGCAGGTCGCAGTTCTCAAAGCCAAGCATTCCGCCTTGCTGAAACCTAGCAATCATGATGAGCGAGCCTACTCCCATTGGTCACAGCGTCAAAACCCCATCCTGTTCGCTCCTTCCAGCCACCAACTGCTCGTCTGGCAGCCCAAATTCGGTCCTCACGGGTCAGGCAGCCGCAGAGGATTCGGGATGTTCGTCGTCAGAGCTCTCAAAGGGATCCTGAAAATACGTTACCTCATTCTTGGTGGAGCAGTCACTGGAGGGATGAGCTTACAGAAgAGTTATCAAGAATGGAAAGAGTCTTTTCCCGACCTGAAATGGTTGGAGAGCTACATGCCTTCGAACGATCAAGTGGACAAATTCAGAAGCTCTCTGATCGATCTCAAAGACAAAGTCAAAGATATAGAAATCGATCCAAGAATAGTCAAGATAGGCGAAGGCAAGTTGACGAAGATGCAGGAATGGCTGAACCAGAAGATCAACGACGCTTACGAAGCAGCTCAGAAATCGGAACTAGAAGGTTCCGGGAAAAATATTGCGAGACCGATTAGAGACACAGTTCaaaaactatacgaagAAGCTGACAATAAAGTGAAAGTCAAAGCTCTGACTTTCGGCTCTACAGATACGCGAAAAGACAAAGGTAATGAGAACGAAGCGGATATGTTGCGCCATGAACTGATAGAGGTccagttgaagtaccaaaaggAGATCGAGAGACTGGAGAAAGACAATAAGGAACTCAAGAAGCAGCTTCTCCTCAGTAAAAGCTCTCGAACTCACCACAAGCAGATCAAGAAGTCCTTGATAGACATGTACTCGGAGGTTCTGGACGAGTTGAACGACTACGATTCGTCTTACGCCGCTCAGGATCACCTCCCCCGCGTCGTCGTCGTGGGAGATCAGAGCGCTGGGAAGACTTCGGTTCTGGAAATGATCGCTCAGGCCAGGATATTTCCGAGAGGAGCTGGTGAGATGATGACTCGCGCTCCCGTGAAAGTCACTCTCAGCGAAGGGCCCTACCACATAGCTCAGTTCAAAGACAGCGACCGGGAATTCGACCTTACCAAAGAAGATGACCTGCGAAAACTAAGAACCGAGGTTGAATTGCGGATGAAACGAAGCCTTTCGAAAGGGAAGTCAGTCAGTCAGGACGTGATTTCAATGACTGTCAAAGGCCCTGGACTGCAGAGGATGGTGCTCGTGGACCTCCCTGGAATAATATCTACTGTAACAACCGACATGGCTCAAGACACCAGAGATTCCATCAGGAAAATGATCCAGCAGCACATGTCCAACCCGAACGCCATCATCCTTTGTATTCAAGATGGAAGCGTGGACGCAGAAAGGTCTAACGTGACGGATCTGGTCGCGCAAATGGATCCATCGGGGAAAAGGACGATATTCGTTCTCACGAAAGTTGATATGGCCGAAGAAAACTTAGCCAACCCCCAAAGAATCCAAAAAATCCTTTCCGGCCGTCTCTTCCCCATGAAGGCTCTGGGTTACTTCGGAGTGGTCACAGGTCACGGGAGAAAAGAAGAATCAATTGCTGACATCAAAGCCTACGAAGAACAATTCTTCAGAAATTCCAAACTCTTCAGAGACAGCAGGCTGTCGTCTACTCAGCTCACCACGAAGAACTTGTCATTCGCCGTCGCTGAAGTATTTTGGAAGATGGTTCGGGAGACAGTGGAACAACAGGCAGATGCCTTCAAAGCCACTAGATTCAACTTGGAGACTGAATGGAAAAACACATACCCGGGCATAAGGGAATTGGACAGAGACGAACTGTTCGACAAAGCCCGCGGCGAGATACTCGACGAGGTCATCAACTTGAGCCAAGTCTCCGTCAAAGACTGGGATAACCTCCTCCTGAAGAAGATCTGGGAGAAAGTGTCGCCCCACGTCATCAACAATATTTACCTTCCCGCCGCTCAATCCCTCAATACGCGAACATTCAACACAATGGTCGACATCAGACTGAAAGAATGGGCGGAGAGCGAACTAGCTGGGAAATCCATCGAGGCTGGGGAAGAGGCTTTGCGTCAAGTCCTCATTGATTTCATCGAGAAGTCGATGCGCTCGAAATCCAACGGCGACGCCATCTTTGACGATCTGAAGCGTGCAGTCGTCATGGAAGCTCTCGAGAGGCACCAGTGGGAAGATAAGGGCAACGAAATGCTGCGTATGATTCAGTTGAACACTCTGGAAGATCACTGCGTGAACGACAAGCAGCAGTGGGACTCAGCAGTTCGACTCCTAGAGCAGACGTTGAAGAATAAGGCTCAGGAAACCGAAGAACAGTTGAAAGCGATGGTCGGGCCAGGAGCCAAAGAGAAGTGGCTTTACTGGAAATATTCCACGGAAGACCAAGTCAAAAAGGGTGGCATCAAAAATGAGCTGGAAAAAGTCATTTTCTCTGATCCAGATCACGGACCGACATTGACTGCCGACGAGTTGACGGCGGTGCGCAAGAATCTCCAGCGCGCTGGGTTCGGGGAGCCGAGCTCCGAGATGATCCTGGACACCTGGCCGACCATCTACGCCAAACACTTCATCAGCAAAAGCATGCTGAGGGCCTACGGGTGCCGGCGAGGTTACTACCTGTACCACCACAACCAAGAAGAGATTGAGTGCCAAGATGTCGTCTTGTTCTGGCGGTTAGAGCAAATGCTCAAAGTCACCGCAACGGCGCTTCGACAGCAAGTTATGAATCGTGAAGCGAGGAGGCTAgacaaaattattaaacaagTTCTAGAGGATTTCAGTCAAGATCAAGAACTCAAAATAAAACTTCTCCAGGGCAGGAGAGTCACCTTAGCTGAAGATTTAAAACGAGTTCGGCAAATCCAAGAGAAGCTAGAAGAATTCATTCAAGCCCTCAACAAGGAAAAGAGTGCTCGTATTGGTCAACCTATTCCAGGAAAACTGGCAGGCGGGAGAGGGGTGAGCTGTGAATCCCAGAAACAAAAGGAGGACGCCGTAGGATGGCAGGAGGCTTGTCAGGACAGATTAATCGATACGAACAGAGTGAATCCGAGTACCAACGCTGAATTGGCATTCCCTAAACACAACTTATTTTTGGGGAGAAACCTCACCCTCTCTACCGCACCAGGCGGGGGTGGCCTGTCCAGGTACTCGGGTGCCAACGACCTTCTGCACTCGTCCAATTTTGGATTCTGCAGCCCTTCATCAGACGTTGAATTCTGCATTCATCCAACTCTGGCTTTGACAAGTATCAACCTGCCAATTACTGGTACTCGACTGACGTCAGTTGAAGCCTCCATGGCTTCCAATTGGGACTGGATGAACAACGGGGGTTCTTCCTACCAGCAGCGTGGGAGGGACATCTGGTCTAACGGAGCCGTCTACTATCCGCAGCCCACGACCTCTGGCGGCACCACTTACTACGGGCCTCCGCCTCATTCGGCCACGGACTGGTCGCCAAATCAGCCTAACTACAGGAACCAGTCGCAAGGAAGTGGAGGGAACGGAGGTGGTTCTGGAAGGTCGAGGAACGCCGAGGAGTTTTTCGACTTGTTCCGAAGCGGCGGCGGAGGTTCACAGCGCGGAGGATCCAACAACGTCGCTCTGCAACCCGACTACGTTGGTGGTTTCGGCGGGATCAGCTACCCCTCGGCCGACTACGGCTACCAGGACTCCTACGTTCCAACGATGGTCTACAATTCCAACCATCCAAACAACAATCCTGGTGCAgCGGAATGGAACAATGGTCGAGAAGGAGCGGTCCCTTCGACTTCTAGAGGTCCGGTGACCGATGAGACGATTGCAGTTGGCGGTCCCACGACGCAAACGTTCGGCAAAGCTCCGGGAGGTCCTCTGGGGACCTTGAGCTCAGGAACGCACCCTCGACAGGTTACCAAGGAGAAGGGAAGCATCCATGGAGGGTCGAGCCTGAATTCCAATTACGGTAGAAGCAATAGTTCGGGTTCCGGAGTAAAAAAAGGGTCGGATCGCCTTTACAGACAacctggaagacaaaatcgatcGTCGAACGGCGGCGGTACCGTTTTCTACAACCAAGGAGGTGGCGCTGTGAACGGGTTCTCATCTGACAGGATGGATTCCCGCCGTGGAGGCAAAGGAGGCCTCAGTGGAGGGTCGATGGGAGGCGTCAAGGAAACCTGGGAAGCTAAGAGCCTAGGAAGGCAACAGCTGCTGAGCGAAGCAGCAGCGCTTCTCAGAGGTAAAACACCTGGGACTGCAGGCCTGATGGATCGCGAGTCGACTGACTTGAGTTGCAACGGGGCTGTCGGTGATGGGGCAGACGATGCGAGAAGTATGAAGAATCTGCTCTCCAACGCCAAATCGTCTCCTTCCTCGTACAACAACAGCTACGGCGGCAATGGTGGTGGAAGGCGCAACGGCAATGGGTTCCAGAAACAGAGAGACTCCTGGAAATCCGGCAATAGAGATGAATGGAAGAATCGTAGCAGCAATAAAGGCGATGACAAAGTGACAGCGGATCAGAGAGAGCGCTTAACGGAGCAGTTGTATCGAGGCACGTTGGAGTGTTTGGTTTGCTACGACAGGATCAGACAAGCTGAACGTGTCTGGTCTTGCACCAACTGCCACCACGTTCTTCATCTTGGTTGCATCGTCAAGTGGGTCAACTCATCAACTGAAGCCACCGGAGGAGAGAGTGGATGGCGCTGCCCTGCTTGCCAGAATGTGACGCAGAACATCCCCACAGaatataggtgtatgtgtggaAAGGTCAACGATCCTCAGTGGGTTCGTGGAGAAACTCCGCATTGCTGCGGTCAGGTCTGCGGGAAGCGTAAATACTGCCCACACGGATGCACGCTGCTCTGCCACCCGGGAGCTTGTCCTCCATGTTGCGCGAATGTGGAGCGCTCTTGCGGTTGCGGTCGAACGTCGCGCATCGTCATCTGTTCATCTTCTGTGACGTTCGACTGCGAGGACGTCTGCGGACGAGCGCTCAACTGCGGGCTGCATCCATGTACCTCCATATGCCACCAAGGCCCCTGTCCTCCCTGCGAAAAATCCATTCACCAAAAGTGCCACTGCGGTCTGGCCGAGAGGGACCTGACTTGCGATGGACACACCGTCCCGCCAGAGATGGGAGGTCCCACGTCGTACTCCTGCGGCTCTCAATGCCCCAGCAACCTCTCCTGCGGGAAGCACCCTTGTCACATGACTTGCCACCCTCCGCCTTGCCCTCCCTGCCCCCTGTCGCCGTCCGTCCTCGTCAAATGCCAGTGCGGGAAGGAAGACGTCCCATCCGGGTCGAGATCTTCCTGCGAAGACCCGGTCGTCCTCTGTGGGTCCGTCTGCGACAAAGAGTTGAACTGCGGTCAATCTGAAGCTCGTCATCGTTGCAAAGCGAAGTGTCACGAGGGACCTTGTCCTCCCTGCGATGGAGTTACTTCGGTTCTATGTCGGTGTCACGCGATGGCCAAAGACATCGACTGCAAGGACCTAACAGGGAACCCTGAAGACACCAAGTGTCAAAAGAGGTGCACCAAGAAACGCAACTGCGGGAAACACAAGTGCAACCAACAGTGTTGTATCGAAGTGGAGCACATTTGTCCTCTGGTGTGCAACAAGACGCTGAGCTGCGGCCAACATAAGTGCGAACGCTTGTGTCACAAAGGCCACTGTCCCATCTGCCTTGCAGCTAGTTTTGAAGAGCTGCACTGCGAGTGTGGGAAGTCCGTGCTTCTGCCTCCCATTCCCTGTGGCACCAGGTCGCCCGACTGCACAGAGAAATGCAGCCGGCCCCACCCCTGTGGCCACGCCCCGCTCCACAACTGCCACTCCGCCCCTGAGTGCCCTCCTTGTACTGTGTTTGTCTCGAGGTACTGCCACGGAGCACACGAGTTGAGGAAAACAGTTCCTTGTCACATGGGAGAATACTCTTGCGGTCGCGCCTGCGGTCGGTCTCTCCCCTGCGGCCACAAGTGCATCAAAACCTGCCATTCCGACGCCTGTCTTCTCCCTGGAGTTTCCTGCACGCAGCCCTGCACTGAGCCCAGAGAGGGTTCCTGCACCCACCCCTGCGCCGCGCCCTGCCACCCCGGAAAACCTTGTCCACAGAGCCATCCTTGCCAAGCTAAGGTCGAAGTGACATGCGAATGCGGTAGAAGGAAAGTAACGAGAACCTGTTGCGAGAACAGTTCCGAATACCAGCGAATCGCGACGTCCCTCCTTGCAGCTAAAATGGCCGACGTTCGTCTTGGAAAGTCGATTGATACGGCCGACATGACGTCTGTTGCGTCCAAAATGTCCCTCAAAACGTTGGAATGCAACGACGAGTGCAAGCTACAGGAACGTAACCTGCGGTTAGCCATCGGTTTGCAAATCGCCAATCCGGACCTCAGCGCCAAACTCCATCCCCGCTACTCGGAAATGATGAAGGGGTGGGCCAAGAAGGATCGAAGGTTCTGCGAAATGGTTCATGAAAAGCTCGCCCAGTTGGTGCACCTCGCGAAAACTAGCAAGCAGAAAAGCCGCGCTCATTCGTTCCAGTCGATGGGCTCCGCAAAGCGCCAGTTCATTCACGAATACTGCGAGCACTTCGGGATCGAGTCCGTCGCTTACGACCCTGAGCCGAATCGCAACATCGTGGCCACCGCTTGGAAAGACAAGGAGAAACGCGATACGGAAGAAGCCAGAAGAGTCCGTTTCGAGATACCGGGAGTAGTACGCGATGAAGAATGCGTCGCCACGCCGCTACCGACTATCCACCCACGTTCCGGTACGAGTTCTGATACGTTTGACGattcatctcttgatcggtaCATCGACGCGGCCGTTGATCGAGCGGTACGTGCCATCGACGCGTCCGCCGCCACAGTAAACCATCAGACCGCCACGACGCCCGATTTATTCGTAAATAGGGTCGTCGACACACCATATCGGCACACCAACGCCACAAATGACACAGCTATTGGCACACCAAATCGGCACACCGACACCATGATGAATGAgatcatcggcacaccgactcggcataccatcgccacaccggggatggttgtcgccacaccagatgtggtcatcgccacaccgaacacggtcgtcgccacacccgatcgacacacgcataccaatgtcgccatggtcgtcgccacacccgatatggtcgtcgccacaccaaatgagcataccatcgccacattcgacacgACACACAAAGGACGGCTGATGCggatcaccaatttgatcgcTACGCCGAACAGGAAACGCAAGAAGGAAGTGCTCACCTCGGGAACGAGACGTTGCGGGACGAGATtgatcgccacgacgatcgccacgacgatcgccacacCGACCGCCACACCGATCGCAACGAAAGTCGCCACGATgaacaacaaccaagaaatccagtggaaatcccagtag
Protein Sequence
MYVLRGTFGYAVPRRTKLVPQVAVLKAKHSALLKPSNHDERAYSHWSQRQNPILFAPSSHQLLVWQPKFGPHGSGSRRGFGMFVVRALKGILKIRYLILGGAVTGGMSLQKSYQEWKESFPDLKWLESYMPSNDQVDKFRSSLIDLKDKVKDIEIDPRIVKIGEGKLTKMQEWLNQKINDAYEAAQKSELEGSGKNIARPIRDTVQKLYEEADNKVKVKALTFGSTDTRKDKGNENEADMLRHELIEVQLKYQKEIERLEKDNKELKKQLLLSKSSRTHHKQIKKSLIDMYSEVLDELNDYDSSYAAQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGAGEMMTRAPVKVTLSEGPYHIAQFKDSDREFDLTKEDDLRKLRTEVELRMKRSLSKGKSVSQDVISMTVKGPGLQRMVLVDLPGIISTVTTDMAQDTRDSIRKMIQQHMSNPNAIILCIQDGSVDAERSNVTDLVAQMDPSGKRTIFVLTKVDMAEENLANPQRIQKILSGRLFPMKALGYFGVVTGHGRKEESIADIKAYEEQFFRNSKLFRDSRLSSTQLTTKNLSFAVAEVFWKMVRETVEQQADAFKATRFNLETEWKNTYPGIRELDRDELFDKARGEILDEVINLSQVSVKDWDNLLLKKIWEKVSPHVINNIYLPAAQSLNTRTFNTMVDIRLKEWAESELAGKSIEAGEEALRQVLIDFIEKSMRSKSNGDAIFDDLKRAVVMEALERHQWEDKGNEMLRMIQLNTLEDHCVNDKQQWDSAVRLLEQTLKNKAQETEEQLKAMVGPGAKEKWLYWKYSTEDQVKKGGIKNELEKVIFSDPDHGPTLTADELTAVRKNLQRAGFGEPSSEMILDTWPTIYAKHFISKSMLRAYGCRRGYYLYHHNQEEIECQDVVLFWRLEQMLKVTATALRQQVMNREARRLDKIIKQVLEDFSQDQELKIKLLQGRRVTLAEDLKRVRQIQEKLEEFIQALNKEKSARIGQPIPGKLAGGRGVSCESQKQKEDAVGWQEACQDRLIDTNRVNPSTNAELAFPKHNLFLGRNLTLSTAPGGGGLSRYSGANDLLHSSNFGFCSPSSDVEFCIHPTLALTSINLPITGTRLTSVEASMASNWDWMNNGGSSYQQRGRDIWSNGAVYYPQPTTSGGTTYYGPPPHSATDWSPNQPNYRNQSQGSGGNGGGSGRSRNAEEFFDLFRSGGGGSQRGGSNNVALQPDYVGGFGGISYPSADYGYQDSYVPTMVYNSNHPNNNPGAAEWNNGREGAVPSTSRGPVTDETIAVGGPTTQTFGKAPGGPLGTLSSGTHPRQVTKEKGSIHGGSSLNSNYGRSNSSGSGVKKGSDRLYRQPGRQNRSSNGGGTVFYNQGGGAVNGFSSDRMDSRRGGKGGLSGGSMGGVKETWEAKSLGRQQLLSEAAALLRGKTPGTAGLMDRESTDLSCNGAVGDGADDARSMKNLLSNAKSSPSSYNNSYGGNGGGRRNGNGFQKQRDSWKSGNRDEWKNRSSNKGDDKVTADQRERLTEQLYRGTLECLVCYDRIRQAERVWSCTNCHHVLHLGCIVKWVNSSTEATGGESGWRCPACQNVTQNIPTEYRCMCGKVNDPQWVRGETPHCCGQVCGKRKYCPHGCTLLCHPGACPPCCANVERSCGCGRTSRIVICSSSVTFDCEDVCGRALNCGLHPCTSICHQGPCPPCEKSIHQKCHCGLAERDLTCDGHTVPPEMGGPTSYSCGSQCPSNLSCGKHPCHMTCHPPPCPPCPLSPSVLVKCQCGKEDVPSGSRSSCEDPVVLCGSVCDKELNCGQSEARHRCKAKCHEGPCPPCDGVTSVLCRCHAMAKDIDCKDLTGNPEDTKCQKRCTKKRNCGKHKCNQQCCIEVEHICPLVCNKTLSCGQHKCERLCHKGHCPICLAASFEELHCECGKSVLLPPIPCGTRSPDCTEKCSRPHPCGHAPLHNCHSAPECPPCTVFVSRYCHGAHELRKTVPCHMGEYSCGRACGRSLPCGHKCIKTCHSDACLLPGVSCTQPCTEPREGSCTHPCAAPCHPGKPCPQSHPCQAKVEVTCECGRRKVTRTCCENSSEYQRIATSLLAAKMADVRLGKSIDTADMTSVASKMSLKTLECNDECKLQERNLRLAIGLQIANPDLSAKLHPRYSEMMKGWAKKDRRFCEMVHEKLAQLVHLAKTSKQKSRAHSFQSMGSAKRQFIHEYCEHFGIESVAYDPEPNRNIVATAWKDKEKRDTEEARRVRFEIPGVVRDEECVATPLPTIHPRSGTSSDTFDDSSLDRYIDAAVDRAVRAIDASAATVNHQTATTPDLFVNRVVDTPYRHTNATNDTAIGTPNRHTDTMMNEIIGTPTRHTIATPGMVVATPDVVIATPNTVVATPDRHTHTNVAMVVATPDMVVATPNEHTIATFDTTHKGRLMRITNLIATPNRKRKKEVLTSGTRRCGTRLIATTIATTIATPTATPIATKVATMNNNQEIQWKSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00146089;
90% Identity
iTF_00146089;
80% Identity
-