Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019169.2:10803996-10858297[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.042 3.5 8.4 0.2 1 20 162 181 162 183 0.95

2 12 0.11 9.4 7.0 0.1 2 21 466 485 465 486 0.94

3 12 0.034 2.8 8.7 0.0 1 20 499 518 499 520 0.95

4 12 0.17 14 6.5 0.2 1 21 623 643 623 644 0.94

5 12 0.015 1.2 9.8 0.4 1 22 718 739 718 739 0.97

6 12 0.0043 0.35 11.5 0.1 3 22 766 785 765 785 0.96

7 12 2 1.7e+02 3.1 0.1 2 21 810 829 809 830 0.91

8 12 0.0012 0.096 13.3 0.4 1 23 854 876 854 876 0.89

9 12 0.43 36 5.2 1.2 1 10 947 956 947 967 0.89

10 12 0.02 1.7 9.4 5.1 1 23 977 1000 977 1000 0.97

11 12 0.52 43 5.0 0.4 1 10 1011 1020 1011 1028 0.89

12 12 0.14 11 6.8 0.0 2 23 1041 1063 1040 1063 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.042	3.5	8.4	0.2	1	20	162	181	162	183	0.95
2	12	0.11	9.4	7.0	0.1	2	21	466	485	465	486	0.94
3	12	0.034	2.8	8.7	0.0	1	20	499	518	499	520	0.95
4	12	0.17	14	6.5	0.2	1	21	623	643	623	644	0.94
5	12	0.015	1.2	9.8	0.4	1	22	718	739	718	739	0.97
6	12	0.0043	0.35	11.5	0.1	3	22	766	785	765	785	0.96
7	12	2	1.7e+02	3.1	0.1	2	21	810	829	809	830	0.91
8	12	0.0012	0.096	13.3	0.4	1	23	854	876	854	876	0.89
9	12	0.43	36	5.2	1.2	1	10	947	956	947	967	0.89
10	12	0.02	1.7	9.4	5.1	1	23	977	1000	977	1000	0.97
11	12	0.52	43	5.0	0.4	1	10	1011	1020	1011	1028	0.89
12	12	0.14	11	6.8	0.0	2	23	1041	1063	1040	1063	0.94

Sequence Information

Coding Sequence: ATGGGAAAGAATGTaacgaaaaaaaccaagaaattcaAAGGAGCACCACTTCCTGCACCAGGTCCCAGTCATGTACCGGATGAGATCGAAGGAAAACCAAGAAACCAAAGAGCAAAGAAAGTGAGGGAGGAATTATTACccaaagaacatttttttgtgacTCATGCACAACCGACGATTACTGGCAAGCAACGGAAAGATAAAGCAGTGTTTGTTTGGCAAACTCAGCCTATAAATTCGGAGAATAGAAAGATACCCAGAAAGAACGTGGTTCACATTCGACCTGGACTGGTGGGGCAAGCTCGAAGCGTTCTTGAACCAATAGATTGCTTCTCACTCGTCATCACTCAGGAAACGCTCGAAATCATCATGAAACGTACCAATGAAGAGATCCACCGAATTTCGAAAATGTCTGCTACTGCGAATGAAATCGAGAGCCTAGATGAGCTGAAGACATTGCTTGGATTGTTCATATACGGTGAGTACGTGTGTCCAAAGTGCAGCGATGCATTTCGTTATCGACGTTATTTGGAAGACCATGTCGTCAAATGTACAGGCACGAACCAGCTCACTCATGAAATGATGCGGTTGGTTAATCGTATAAAGGCCATACAACACAAGATCGCTGACTCACGTAAAGTAGAATCTAACTTAACGGAGAAGGTGAAATCTAAGGTGATGTGCACTGGTAATTGCTCGGTGGTTCTACGTAGATTGCAATTGCCagatgaagagaagaaaagggTTTTCAAAGTGCGTATTGTGCCCACCGTCAGACAAAAGGACGCAGAGGAGATTCCTCCCGTTGAGGTACAAGCTGTTGCAGACAGTGCTGTTAACTCGGTTGTTATCAGTGATAGTTCTCCAGTTGATACTGAAGGGGATTCTCAAAAGTCTTCTACACCTACCAATCCTGATATTGAAGAAGAGATCGATGTGGAGTCTGTCGTTTCCAAGAGTCAGGCTGATGAGGAACGTCGACAACCAGAAAATCCCAAGATGAAGTCGAAGCGCAAGAAGAGATCCAGCAGCGAAGAGGAGGTCGACAGAAAGCGATCCAGAAGAGGGCGTCCCTCCACAAAAAAACGTCCCTCCCCGAGTGtccagagttcaacacccccGAGAAAACTGCGTGCTAGGAAGCCCGTCAGCTGTAaagAATCTTCTGCCGACAGCGACTCCGAGCCGATTCCTGAACTAGCTGGCTTTAGTGCTGAATCTGATGTAGACCCTGATTTCGACCCCGTCaaggaaatcaagaaaaacacgAAACGTGGGCGAAAGGCGATAAGTTATTCTGATAGTTCATCTGAAGATGAGGAAGGACGTTCTAAAGGTAGTTCTGCAGGAAGTTCTTCTGGGAGTAGAGGGAGGAGGAGTGTTGCGGGAGCTCTCTCATGTGGTCAATGCAACGCCCCCTTCGCCAACATCAATGGACTCAGAACTCATCACCGCCTTTcggaaaaatgtggaaaactaCCACCTGAAACCGTTTTCAAATGTGATGAGTGCGCCGGGATTTTCGCCGATCAATCCTTGTTGGACAAGCACCGCTCTGAAAAGCCATGCCGGAAAACTACCCCTACACCTTCTAATGCGTCTGTTGGTAAAGCAAGCAGCACAACGTCTGAAAGAAGACCTCACAATTTGGCCACAGGCCCCCACATCTGCAAGTGCTGTAAAGTTGTATTCAATTCCGTCCTCGGAATTGGCTTACACTTGAAGAGATCTAAGAAATGTATCGCAGATAATCCATCTGTCGACATACCTGGTGTAATAGATAAAAGCTCAGTCGTGGACAGCTCTTATGATTCGACTACAAAGAATTCAGACCAAGCTGATAAAAAAAACAACCAGAACTCGGTGTTTGTATGCGTCAAATGCTTTTCATCGTTTTCATCTGTTTGGGGATTGAGGACTCATGAACGCAATTCTATCGAATGCAAGCCAGATCGGCCGTACGAAATACCTGTGCCTATCCCTAAAGAACAAGCTGAAAAGCTAAAGAAAGAGTATTTGGCGAAGCTGAAGAAAAACCAAACAGACCCTGAACAACCAAATTCCTCGTCAGACAAAGGACCTGATGGGCACAATAAAAAACAAGGGTTTTTGATGGTGTACACGCAGGAGTGCCAGGATGAAGACGGGAAGTTCAAATGCAAAACGTGTTCCGCTCTCTTCACTTCGGTTTGGGGGCTGCGCACTCACCAGAGAATGTCCGAGAGTTGTGGGGAACaaaacaagGTCGTTCTGAGCGACGCCGCTGCTAAATCTATTGCCAAAGGTGAAAATATTTGTCCCAATTGCGCCGCGAAGTTTAGTACATCTTGGGGACTAAGAACTCACCTTCGAACTTCTAGTCTCTGCTCTGAGCATGAAAATGAGACTAAGGGGCACGACTCCAAGAAAAAAGAAGGTCAGATACTCTCTTGTGCGAAATGCGAAATGATTGTCTTTCAATTGTATCAGCTTCGTGATCATGTCAAGTATAGCCCAAGTTGTCGTCCAGATGATGTGACCATCACTAAAAACGGTCGAGTTCAACCTGGAGCTGGTTGTTTCTTGTGCCCTCAATGTCCTAAGACGTTTAAACTTCCGTTCTCGCTGGAGCAGCATTTTGTGGAGCACGCTCCCCAAAGAAATGTGTGGCGCTGCCATTTGTGTTCAAACGAGGAATTCGCGGACCAATTTACCATGCATCGACATTTCCACCGGAAGCATCTTGGAAGTTGGTTTTGTATCATCTGTGACAAGAAGCCTACCATCAATTCATTCAAGGAGTTCTACGCTcacatttttgattttcattcatcTGATCCTGAAAATGCGAAGATTTACTTCAGATGTCCAATCTGCTTCAAGTCCTTCCTCTCAAAATTCAGCTACGACTTCCACATTAATTCCTGCAAGAGGTTGGCTGAGCAGATTTTCACTTGTGCGTCCTGTAAAAAAGTATTCAACAAGAAAATCCACATTCACAACCACATGAAGTACGCTCATACAGGAGTGGATATTGACAGCCGTTACGTATTCAAGTGTCCAACATGCCCTCGTAGATTCCTCTCAGAGAAGGAATATCGAcagaaacatgaaaatgaaTCTTGCGTTCTATCAGAAATGCCTTGTGAAATATGTGGAGAAATGCTCATGGGTTTTGACAAACTCAAAGTCCACATTGAGATCACCCACAAAAAACGTTCCGACcttcaaactggtaggaaatctCCCCTACTAGGAAGGAAGTCGCCCGAACCTTCCCTTCAGTCGGAGAAGACGTTTCAGTGTCCCTCCAAAGCCACTACAGTGATATCGTCGTCCAGCAGTTCCCCCGTGCCTTCCTCCCTCAGCAGCACCGTCGTGGAGTCCCCCGCTTCGCCTGACTTCAGCATTCCTTCAGTCAAGATCGAGCCTTCCTCACCTTGA
Protein Sequence: MGKNVTKKTKKFKGAPLPAPGPSHVPDEIEGKPRNQRAKKVREELLPKEHFFVTHAQPTITGKQRKDKAVFVWQTQPINSENRKIPRKNVVHIRPGLVGQARSVLEPIDCFSLVITQETLEIIMKRTNEEIHRISKMSATANEIESLDELKTLLGLFIYGEYVCPKCSDAFRYRRYLEDHVVKCTGTNQLTHEMMRLVNRIKAIQHKIADSRKVESNLTEKVKSKVMCTGNCSVVLRRLQLPDEEKKRVFKVRIVPTVRQKDAEEIPPVEVQAVADSAVNSVVISDSSPVDTEGDSQKSSTPTNPDIEEEIDVESVVSKSQADEERRQPENPKMKSKRKKRSSSEEEVDRKRSRRGRPSTKKRPSPSVQSSTPPRKLRARKPVSCKESSADSDSEPIPELAGFSAESDVDPDFDPVKEIKKNTKRGRKAISYSDSSSEDEEGRSKGSSAGSSSGSRGRRSVAGALSCGQCNAPFANINGLRTHHRLSEKCGKLPPETVFKCDECAGIFADQSLLDKHRSEKPCRKTTPTPSNASVGKASSTTSERRPHNLATGPHICKCCKVVFNSVLGIGLHLKRSKKCIADNPSVDIPGVIDKSSVVDSSYDSTTKNSDQADKKNNQNSVFVCVKCFSSFSSVWGLRTHERNSIECKPDRPYEIPVPIPKEQAEKLKKEYLAKLKKNQTDPEQPNSSSDKGPDGHNKKQGFLMVYTQECQDEDGKFKCKTCSALFTSVWGLRTHQRMSESCGEQNKVVLSDAAAKSIAKGENICPNCAAKFSTSWGLRTHLRTSSLCSEHENETKGHDSKKKEGQILSCAKCEMIVFQLYQLRDHVKYSPSCRPDDVTITKNGRVQPGAGCFLCPQCPKTFKLPFSLEQHFVEHAPQRNVWRCHLCSNEEFADQFTMHRHFHRKHLGSWFCIICDKKPTINSFKEFYAHIFDFHSSDPENAKIYFRCPICFKSFLSKFSYDFHINSCKRLAEQIFTCASCKKVFNKKIHIHNHMKYAHTGVDIDSRYVFKCPTCPRRFLSEKEYRQKHENESCVLSEMPCEICGEMLMGFDKLKVHIEITHKKRSDLQTGRKSPLLGRKSPEPSLQSEKTFQCPSKATTVISSSSSSPVPSSLSSTVVESPASPDFSIPSVKIEPSSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -