Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019178.2:45762636-45794797[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.8e-06 0.00048 20.5 1.0 2 23 286 307 285 307 0.97

2 9 0.0013 0.1 13.2 0.7 1 23 313 335 313 335 0.99

3 9 0.0067 0.55 10.9 0.9 1 23 340 363 340 363 0.96

4 9 0.00025 0.021 15.4 0.6 1 23 369 392 369 392 0.97

5 9 0.054 4.5 8.1 0.8 1 23 412 434 412 434 0.94

6 9 0.31 26 5.7 1.1 1 23 439 462 439 462 0.94

7 9 0.0022 0.18 12.5 1.9 3 23 498 518 496 518 0.97

8 9 0.028 2.4 8.9 1.0 3 23 525 545 523 545 0.96

9 9 0.00032 0.027 15.1 0.1 1 23 551 574 551 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.8e-06	0.00048	20.5	1.0	2	23	286	307	285	307	0.97
2	9	0.0013	0.1	13.2	0.7	1	23	313	335	313	335	0.99
3	9	0.0067	0.55	10.9	0.9	1	23	340	363	340	363	0.96
4	9	0.00025	0.021	15.4	0.6	1	23	369	392	369	392	0.97
5	9	0.054	4.5	8.1	0.8	1	23	412	434	412	434	0.94
6	9	0.31	26	5.7	1.1	1	23	439	462	439	462	0.94
7	9	0.0022	0.18	12.5	1.9	3	23	498	518	496	518	0.97
8	9	0.028	2.4	8.9	1.0	3	23	525	545	523	545	0.96
9	9	0.00032	0.027	15.1	0.1	1	23	551	574	551	574	0.97

Sequence Information

Coding Sequence: atgcCTGACGATTTAGATTATCAACAAGGATCGTCTGACCAAGTACTTCCGCCACCATTGTTCAATTATGATGCCGACGATTTGCTGAGTGAGTGGGAGCAATGGTTTCCGAAACTCGAAGAGTACCTCATCGCGTACGAACAAGCGGATTCCCCTGACGAGGATAAAATCAGAGTACTGCTCAACCACCTGGGGAATGAAGGCAAGGAGATCTACGAGTCTCTCGAGGCTAAAAACAGTCCTGGTGAGAGAATTACATCTTACAAAGAGCTGACAAGTGCGTTGACAGTGTATTTCGAATCTGCTAAAAACGTTCTCTTTGAGAGgttcaaattcttcaaaatgaagagaaaatctGGGCAGCCGGTCGTTGATTTTGTAAATGATTTGACGAAAGCTGCTAGTTGTTGCGAATTCATTGAAGAGGATTTCATCATAAGAGACAAGCTTTTGGAGCAACTCAAGGACAAGTTGCTAATAGAACGGCTCCTGGTGGAAGGTGGATCGTTGAGGCTGGAGAGGGCTGTAAAAATCTGTCAGAAATGGGAGAGCAGGAAGGGGCTGGGAAATGAGAATAAACCTCCAGGATCGGGGAACGATGACCCAGAGCCCCCCAAGACTTCAGTCAGCACCAGAAGTAGTCAAAAATGCGACAAAAAACCAATTGTTAAACaaGCTGACCTCCCTGTGGTGACGATTTTGGGTGTGGTCCCCGAACTGATGAATGTCTGCCCCAAAAAATCTCTGGACACAAGAAGTGATAGCTGGGACAACGATGATTCAAGGGACTTCAGCGATTCCAGAGATTACAGCGATAAGGAAGAGGATCCTCAACCTAGGAAAAAAGGTCCGCAAATGTGTGACGTATGTGGTAAAATATACGATCGCCCTTGTACATTGAAACGGCACATGCAGGTGCACAGTGAAATTAAAGCCTACAAGTGCAGCAAATGCGATTATCGTGCAGCTCAAAAGTCGTCTGTGTCGTCTCATGAAAGGATTCACGAAGGTCGTAAATTTGCCTGTGACATGTGCGACTTCAAAGCTCGTCGATCTTACGGTTTGAAAATGCACAAACTGACAAACCACTCTACTGAAAGACCATTCAAATGCGAACACTGTCCTCGTGGATTTCCCGATGTTGGCGCTCTCAACTACCACAAGAAAATTCGACATCCATCTACGACAGAGGGCGCTGGAAAAACGGACAAACCTGATGAAACTCCTTATAAATTCACCTGTGAAACGTGTGGAAGCAAATTCATCAGTGAATTCAGATACAGGACTCACGTGGAAGGCCACAAAGGTCAAACATATCAATGTTACACTTGCAGTTTCAAAACAGTCAGCCGTAACAGCATCATCCGTCATCTAGCTCAACAGCATGGTTCTCAAACCTTCACCTGTAGTGTTTGTGGTTTTACTACCAAGTGTCGACGGACATTACATTGCCATAAGAGAATTCATGACACTTTCCCCACTGAAATGGCGTGTGAAGTTTGTGGTTATACTACCAAGCTTCGACATAAATTGCAAAAACATAGCAGGATACATGGTGCTAGACACATCGCGTGTAATTTCTGCGAATTCAAGTCATACAAACGAGCGACTATGACTGCTCATATGAGGAGACACACAGGAGAGAGACCTTTCCAGTGTTCTTTCTGCGGTTATAAAGCAGCTCAGGCGGGGACGTTGAGGAAACACATCGAAGTCATGCATAATAAGAACAATACGAGTAACAGGAAATCTAAAGCTCCTCCTCGTCCGGCTCCTAGCGCAGTAGAACCTGCACAAAATGTTGGATCTAGTCATAACGATAATCTTCCCGTGCCTCAAGTGTATCCCAACAACAACAACCCAACTGTTGACACAAGCTACAACCATCCGATGGTTCATAACCCTTACCCTACCACTAACGTTCCTCCTAACAACCCACCTGTGTATTTGTCCCAAAACTATTATAATCCACACACTAATACATATTACAGCAATCAAAATGTCGACATGAGTCACAACAATTCTCCGTTCGATTTAGATCAATTTGTTCGATCGAACATGATTAGTTAA
Protein Sequence: MPDDLDYQQGSSDQVLPPPLFNYDADDLLSEWEQWFPKLEEYLIAYEQADSPDEDKIRVLLNHLGNEGKEIYESLEAKNSPGERITSYKELTSALTVYFESAKNVLFERFKFFKMKRKSGQPVVDFVNDLTKAASCCEFIEEDFIIRDKLLEQLKDKLLIERLLVEGGSLRLERAVKICQKWESRKGLGNENKPPGSGNDDPEPPKTSVSTRSSQKCDKKPIVKQADLPVVTILGVVPELMNVCPKKSLDTRSDSWDNDDSRDFSDSRDYSDKEEDPQPRKKGPQMCDVCGKIYDRPCTLKRHMQVHSEIKAYKCSKCDYRAAQKSSVSSHERIHEGRKFACDMCDFKARRSYGLKMHKLTNHSTERPFKCEHCPRGFPDVGALNYHKKIRHPSTTEGAGKTDKPDETPYKFTCETCGSKFISEFRYRTHVEGHKGQTYQCYTCSFKTVSRNSIIRHLAQQHGSQTFTCSVCGFTTKCRRTLHCHKRIHDTFPTEMACEVCGYTTKLRHKLQKHSRIHGARHIACNFCEFKSYKRATMTAHMRRHTGERPFQCSFCGYKAAQAGTLRKHIEVMHNKNNTSNRKSKAPPRPAPSAVEPAQNVGSSHNDNLPVPQVYPNNNNPTVDTSYNHPMVHNPYPTTNVPPNNPPVYLSQNYYNPHTNTYYSNQNVDMSHNNSPFDLDQFVRSNMIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -