Aluc019352.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- Mrm2
- Assembly
- GCA_009739505.2
- Location
- CM019170.2:34950982-34989983[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.58 48 4.8 4.2 1 23 175 197 175 197 0.98 2 13 4.6 3.8e+02 2.0 0.1 1 22 235 256 235 259 0.83 3 13 5.6 4.6e+02 1.7 0.7 2 23 267 288 266 288 0.88 4 13 2.2 1.8e+02 3.0 0.1 1 23 338 360 338 360 0.93 5 13 0.0065 0.54 11.0 2.5 1 23 376 398 376 398 0.98 6 13 0.036 3 8.6 1.2 1 23 404 426 404 426 0.98 7 13 0.00034 0.028 15.0 2.4 1 23 437 459 437 459 0.98 8 13 0.0024 0.2 12.3 5.4 1 23 465 487 465 487 0.98 9 13 4e-05 0.0033 17.9 0.3 1 23 497 519 497 519 0.97 10 13 0.0011 0.087 13.4 2.9 1 23 526 548 526 548 0.99 11 13 0.00025 0.021 15.4 0.2 1 23 554 576 554 576 0.98 12 13 3.1e-05 0.0026 18.2 1.3 2 20 584 602 583 605 0.92 13 13 0.0013 0.1 13.2 0.4 1 23 612 635 612 635 0.96
Sequence Information
- Coding Sequence
- ATGCCTCCTAAGTATTTCAAACTTCTTCACTTCGCTCGATCGAAATCACGTCAACACCTCAAAGCAACTTGGGGCGAAATGAATTCGTCGAGAGTATTTTACATTGTGGTGAGGAGTGCCCGGAGGATACCAGAGGATGAGGGTGCAAAGAACGTGGACCTGAATTCCCTGAGGAGGATcattgaaaaaactcaaaacaaaTTAGCCGTAACTTCAAAGCCTGCCAATAACCAAAATGCAGCCCAGGACTCCAAAACCGTTGTAACTGAAGAGAAGGTCAAGATCAAACCTGATCCTGATGCCAAAAATGGAGAACGAACAGGTAGTGGAAGGAGCCCCGAAGAACGAGTGACTAATAAAGGACTTAAATCTCCTTTGAAAGTATTCATCAAGGTAGAGCCTgatgagaaaaataattattctgAGGAAATTACGACCAACTCAGATGTAATCGAAGATGATAGGCATCCGGCAAAACGTCAAAAAGTGACAGAACAGGTGACTGGTGAAACGAAAACTGATTACTCTTGTTGTTTTTGTAAGTTCTCTACTAAGGAATCCAACGAATACAGATCCCACATTGCCAGCCATCTGAAAAACAAGGTGTTGAATTGTAACTCTTGCGCATTCTCCACGGACAAGATCAGTGTGTATAATAACCATGTCAGAGCTGCTCATCCTCAGAAGCGTACGACTATCATGTATGCGTGTCCAATGTGCAGTTTCAAAGATCCAAAGATGGATGCGTTGCGAAGGCATCAAACAGTGACTGGTCACAGTGAACATCGGCCAGTTCAGAAGTGTAAAATCTGCAGTTACTCGAATAGAAACGTTCTCAAAATGTTGGAGCACATCTTGACTCATAAGCCAGAACAGCTCATCAAAGAGTGCAACTATTGTGATGGAAAGTCTAGTGAGGAAAACCAGCATAGTAAACAATGTTTGGAGGTGACAGTACCGGTGATTCACAAATATGAAGAAACTATTGAAAGTTCTGAGCAGAAAAAAACCTTCTCGTGTACGTTATGTGATTTTGGAAGTGAAGAGCAGTTGTTTTTGGTCGAGCATATAAAGGCTCATGCCAAGTTAAGTAGCGATGGAGTTGATGAAGATGATGAAAATCCGTTCAGTTGCtctatgtgtgacttcaggtgcGAGAAACCAAACAGGCTGGTGATTCACATGAAAACACATAAGCCAGGCACAGTGTACCGTTGTAAAACGTGCACGTATGAGTCGGCGGACTTCGAAGCGTTCAAAGCCCATCGTAAATTGCACATTGTGACGCGTCCGGATGGGAGCAAAGTCTTCTCGTGTTTCATCTGCTTTATGAAGTTCTCCAAACAGGAAACTATGCAGGCACATATGAAGAGTCACATAACCCCCAGGCCGTTCTCATGTCACCTCTGCGAGTTCAAGTGCGCTTCTAAGAACGACCTTATCAAGCACCTTAAAACCCACACCAAGCAAAAGGTAACTACGATATTCTTCCCTTGCCCCCTCTGCCCTCAAAAGTACTCGACAAGTGCCAGCCTCCGGACTCATCTGTCCAACCACAGCACAGAATCCAAACCATACCAGTGCGATTTTTGTGACTACAACTGCTACACCAGTGAACTCCTCAGAGTTCACGTACAGAAACACTCAGGCGGTAACAGGTTCCGATGTGAGATCTGCCTGGTGAGTTACTCTTCCGAAGCCAAGCTGAAGGCGCACATCCGAGACCATCTGACCACCGATAAACCTCTGAAGTGCAACATATGTCACACGAGTTTCTCTTCACGCGCCCAACTCAACCGCCACACGCCGATACACTCTGGCCGTGCTGATCCCTTCATCTGTTACGTCTGTCCACAGAGTTTCCCTACTCTCAAGAGTCGACGGGCGCACATGTTATCATCCCATGAAATCGAGAATGAGGAAGAATGGAAGTCGAGTCAGCCAATCGTCGTCCGAACCGCGGCCGACGAGTCTGAAACTGCTCTGGACAAGTACGGCTATGTAGAGGAAGACCTGGCACGAGATACGGACTCAGAAGAGGAGCTTCTTCACCCTGAACAACATCATTTCATTGGATATCCGACGGTGGAGAAGGAGAACCAGTCCGTCCAATTGAGGACGGGAATTGAAAGTTCGTACACAACGTATTTAAAACTCGTAAAAGTAATTGTGGCATGTCGCCTGTATATTCGCCCAGAAGAGAAGTATGAAATAGATCAATCAATCAAACCTGGCAGAGGGTTGACGCTTGACAACATCCCGATAAAAACTATCTATCCATCAAAGTTGttgtCCATTTGCTTGGGTGCCCCTGGGATTGACATGAACCACGTCAGTTGCCGGTGGTTGTCCGTTTCTGCCACCTTGAAGAAAGAAATCGCCAAGAACCTCAAAGGGCGAAGCAAAAGTTCGCAAGACTGGCTGCTTCGACAGCTTAGAGACCCCTACGTCGAGAAGGCCAGGACAGAAAACTTCAGGTGCCGGAGTGCTTTCAAACTTTTGGAAATCAACGAAAGATTCAACATCCTTCGCCCTGGTCAGTGTGTGGTCGATATCGGTGCAGCCCCTGGGAGCTGGTCTCAAGTTGCTGTCAGCAAAACAAATTCTTTAGGAAAAGATAAAACACGGCCGATGGGGTTTGTAGTGGGGCTAGACCGTCTCGCCCTGTATCCTGTGGAGGGAGCTGTTTTCATTGGCGGATGCGATTTCACGGTACCAGAAGCAGAAAGACGATTGCTGGAAGTGCTGGGTGACAGGAAAGTGGATGTAGTGCTCAGTGATATGGCGCCTAATGCTACTGGCATCAAATCCATGGATCACGATGTCATTATTTCACTTGTCAATAAAGTATTGAGGTTCAGTATGGGGATCAGCGCTGAAGGAGGGTCGCTCCTCATGAAGGTCTGGGAAGGTCGATTCTGCCAGGAGCTCGAGCGTGACGTCACTGCTGTCTATGAGACGACCCGCTGGGTAAAACCTAAAAGCAGCCGTACTGACTCTGCTGAAACCTTCATCCTCGGCCGTGGCTTCAAAGGTCCTCCAAGTCAAAGGTGA
- Protein Sequence
- MPPKYFKLLHFARSKSRQHLKATWGEMNSSRVFYIVVRSARRIPEDEGAKNVDLNSLRRIIEKTQNKLAVTSKPANNQNAAQDSKTVVTEEKVKIKPDPDAKNGERTGSGRSPEERVTNKGLKSPLKVFIKVEPDEKNNYSEEITTNSDVIEDDRHPAKRQKVTEQVTGETKTDYSCCFCKFSTKESNEYRSHIASHLKNKVLNCNSCAFSTDKISVYNNHVRAAHPQKRTTIMYACPMCSFKDPKMDALRRHQTVTGHSEHRPVQKCKICSYSNRNVLKMLEHILTHKPEQLIKECNYCDGKSSEENQHSKQCLEVTVPVIHKYEETIESSEQKKTFSCTLCDFGSEEQLFLVEHIKAHAKLSSDGVDEDDENPFSCSMCDFRCEKPNRLVIHMKTHKPGTVYRCKTCTYESADFEAFKAHRKLHIVTRPDGSKVFSCFICFMKFSKQETMQAHMKSHITPRPFSCHLCEFKCASKNDLIKHLKTHTKQKVTTIFFPCPLCPQKYSTSASLRTHLSNHSTESKPYQCDFCDYNCYTSELLRVHVQKHSGGNRFRCEICLVSYSSEAKLKAHIRDHLTTDKPLKCNICHTSFSSRAQLNRHTPIHSGRADPFICYVCPQSFPTLKSRRAHMLSSHEIENEEEWKSSQPIVVRTAADESETALDKYGYVEEDLARDTDSEEELLHPEQHHFIGYPTVEKENQSVQLRTGIESSYTTYLKLVKVIVACRLYIRPEEKYEIDQSIKPGRGLTLDNIPIKTIYPSKLLSICLGAPGIDMNHVSCRWLSVSATLKKEIAKNLKGRSKSSQDWLLRQLRDPYVEKARTENFRCRSAFKLLEINERFNILRPGQCVVDIGAAPGSWSQVAVSKTNSLGKDKTRPMGFVVGLDRLALYPVEGAVFIGGCDFTVPEAERRLLEVLGDRKVDVVLSDMAPNATGIKSMDHDVIISLVNKVLRFSMGISAEGGSLLMKVWEGRFCQELERDVTAVYETTRWVKPKSSRTDSAETFILGRGFKGPPSQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -