Aluc019206.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019170.2:4049635-4056644[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.1 4.2e+02 1.9 0.2 12 23 209 220 207 220 0.85 2 13 0.014 1.1 9.9 5.0 1 23 655 677 655 677 0.96 3 13 6.5e-05 0.0054 17.3 6.5 1 23 683 705 683 705 0.99 4 13 0.007 0.58 10.9 1.6 1 23 711 733 711 733 0.97 5 13 0.0027 0.22 12.2 0.2 1 23 739 762 739 762 0.93 6 13 0.00045 0.037 14.6 0.4 1 23 768 790 768 790 0.98 7 13 0.0009 0.075 13.7 0.8 1 23 796 818 796 818 0.98 8 13 0.012 1 10.1 1.9 1 23 824 846 824 846 0.96 9 13 6.9e-05 0.0057 17.2 0.6 1 23 852 874 852 874 0.98 10 13 0.0028 0.23 12.1 1.8 1 23 880 902 880 902 0.96 11 13 7.3e-05 0.006 17.1 0.2 1 23 908 930 908 930 0.98 12 13 0.22 18 6.1 0.9 1 23 936 959 936 959 0.95 13 13 0.031 2.6 8.8 0.1 1 23 964 987 964 987 0.93
Sequence Information
- Coding Sequence
- ATGGAAGACGACATTGTGGTGAAGGGAGAGCCGATGAGTGAGGGAGAGGGGACGGAAACAGATCAAGTGACGTTTGAAGTTGTGATGATCAAACAGGAGGTGATGATCGAGGATGAACACGTCGAAGAGGATGTTGGAGGCTGTAGGAGAGTCGAAGATGAAGTTGGGGGGTATCCGATAATTAAACAGCAGCATGAGTCAACTGCTGACCCACTCGGCGATGAATGTGACGTTCTGGAGGAATCTGTTGAAATGCAGACAACAGGGTCTGAGGCAGGACCTTCGACTTCGAGAAGTGGAGTGCCGAAGAAGCATTTGATGACTCACGCTGGGAATGATCAAATCAGGGATGAACACGTCGAGGAGGAGGTTGGAAACACCAGGAGAGTCGAAGATGAAGTTGCAGGGCAAATGATTGTCAAACAAGAGACGTCGATTGAGGATGAAAACGTCCAAGAGGTTGTTGGAAACACCAGGGGGGTCGAAGATGAAGACGCGGGGTATCCGATAATTAAACAGCAGCATGAGTCAACTGCTGACCCACTCGGTGATGAATGTGACGGTCTGGAGGAATCTATTGGAGTACAAGGATGTGCTGAGGAAGGACCTTCGGCTGAAGCTTCGAGAAGTGGAGTGCTGAAGAAGCATTTGATGACTCACGGTGGGAATGATCAAATCAGGGACGAACACGTCGAGGAGGAGGTTGGAAACACCAGGAGAGTCGAAGATGAAGTTGCAGGGCATCTGATTGTCAAACAAGAGACGTCGATTGAGGATGAAAACGTCCAAGAGGTTGTTGGAAACACCAGGAGAGTCGAAGATGAAGTTGCAGGGCATCTGATTGTCAAACAAGAGACGTCGATTGAGGATGAAAACGTCCAAGAGGTTGTTGGAAACACCAGGGGGGTCGAAGATGAAGACGCGGGGCATCCGATAATTAAACAGCAGCGTGAGTCAACTGCTGACCCACTCGGTGATGAAAGTGACAACGAACACGTCGAGGAGGGCGTTGGAAACACCAGGAGAGTCGAAGATGAAGTTGGGGGGTGCCCAgcgatcaaacaggaggtgCTGATCAGAGATGAACATGTCGAAGAGGAGGATGGAAATAGCAGGGGATTCGAAGATAAAGATGCGGGGTGTCTGATGAACAAACAAGACGTACCGAATAGTGATGAACGAGTCAAAGAGGATGTTGGAGGCTGTAGGAGAGTCGAAGACGAACTTGAGGGGTATCCAATGACCAAAAAGGACCATGAGTCAACTACTGACCCACTCGTCGAGGAAAGTGACGTTCTGCAGGGATCTGTTGAAAAACAAGATAGGCTAGTCAGGAACAAAAACGTCGAAGGGGAGGTTGAAAACAGCAGGAGAGTCGAAGATGAAGTTCCGAAGATGAAGTATCCGATGATCAATCAAAAGGTGCTGATTGGGGATGAGCCTGTCGTAGTGGATGGAAACAGAGGGAGAGTCGAAGATGAAGTTGTGGTGTATCCAATGATCGAACAGGAGGTGCTGATTGGGGATGAGCCTGTCGAAGAGGATGGAAACACTGGGAGAGTCGAAGATGAAGTTGTGGCGTATCCGTTGATCAAACAAGAGATGCTGTTTGGGGATGAGCCTGTCGAAGAGGATGGAAACACTGGGAGAGTCGAAGATGAAGTTGTGGAGTACCCAATGATAAACCAAGAGGTGCTGAATAGGGAACCCGTTGAAGAGGGTGGAAACATCGGCAGAGTCAAAGATGCAGTAGCGGCATTCAAGCACGAGCCAACTGCTGACCCACTCGGTGATGAAAGTGACGTTCTGCAGGGATCTGTTGAAGTGCAGACGTTGTCTGAGGCAGGACCATCGAGTGAGTTGACGAATCAACAGACTTTTGCAGGCAACAGCtatgattacagagcctcgcagctaggataTTTGAAGATAAACAAAAAGACTCGGACTGGGGTGAAGCCCCATGCGTGTAATATATGTGATTACGTAACTTTTCGGCTATGTCATTGGAAGGATCACATGCGTATTCACACgggggaaaagccctacaccTGCGATCAATGTGATTACCGGTGTGCACATCAGAGAACTCTAAAAAAGCATATCAGGACTCACTCAGGAGAAAAGCCCTATGCTTGTGATAAATGTGACTTCACAGCCTCTCATTCATTAGAGTTGAAAAAGCACACagtgactcacactggagaaaaGCTCTttgcctgtgataaatgtgattacacaGCCTCGCAGTTAGGAAACctaaaaattcacttttcaagtataCACAATGGAGAAAAGCCTTATGCCTGTAGTAAATGTGATTTCAGAGCCTCCCAGCTaggagatttgaataaacacgTGAAGACTCACGCtggggagaaaccctatgcctgtgataaatgtgattatagAGCCTCTCAGctaagatttttaaaaactcatatGATAACACATACTGGAGAAAAACCCCATGCCTGTGACATATGTGATAACAGATTTTTACAACTACAACATTTGAAAGAGCATATGCTTattcacactggagagaagcactacgcttgtgatagatgtgattataGAGCCTATAACAAATCggctctgaagactcacatgaggattCACACCGGTGAGAAGCCCcatgcctgtgatagatgtgatttcaGGGCTGTAAGGCTTGGACATTTGAAAGAGCACATGCGTattcacactggggaaaagccctacgcttGTGAAATATGCGATTACAGAGCTTCGCAACAAGGAAACATCAAGATTCACATGAAGACTCACTCTAGggagaagccctatgcctgtgataaatgtgttTTTCGGTCGGTTCATCTGGGGGCTCTGAGGAAGCACAAGAGCTCTGTCCATGGGGAAAAGTCCTACGCCTGTGAAAGATGTGATTACAAATCCTCGCTGAGTGGAGATCTGAAGACGCACGTCTTAGAGGCTCACAGAGGTACACCCACGACATCTCAAGAAGCACAAGATTACTCACACCAGAGTGAAGCCGTTTTGTGA
- Protein Sequence
- MEDDIVVKGEPMSEGEGTETDQVTFEVVMIKQEVMIEDEHVEEDVGGCRRVEDEVGGYPIIKQQHESTADPLGDECDVLEESVEMQTTGSEAGPSTSRSGVPKKHLMTHAGNDQIRDEHVEEEVGNTRRVEDEVAGQMIVKQETSIEDENVQEVVGNTRGVEDEDAGYPIIKQQHESTADPLGDECDGLEESIGVQGCAEEGPSAEASRSGVLKKHLMTHGGNDQIRDEHVEEEVGNTRRVEDEVAGHLIVKQETSIEDENVQEVVGNTRRVEDEVAGHLIVKQETSIEDENVQEVVGNTRGVEDEDAGHPIIKQQRESTADPLGDESDNEHVEEGVGNTRRVEDEVGGCPAIKQEVLIRDEHVEEEDGNSRGFEDKDAGCLMNKQDVPNSDERVKEDVGGCRRVEDELEGYPMTKKDHESTTDPLVEESDVLQGSVEKQDRLVRNKNVEGEVENSRRVEDEVPKMKYPMINQKVLIGDEPVVVDGNRGRVEDEVVVYPMIEQEVLIGDEPVEEDGNTGRVEDEVVAYPLIKQEMLFGDEPVEEDGNTGRVEDEVVEYPMINQEVLNREPVEEGGNIGRVKDAVAAFKHEPTADPLGDESDVLQGSVEVQTLSEAGPSSELTNQQTFAGNSYDYRASQLGYLKINKKTRTGVKPHACNICDYVTFRLCHWKDHMRIHTGEKPYTCDQCDYRCAHQRTLKKHIRTHSGEKPYACDKCDFTASHSLELKKHTVTHTGEKLFACDKCDYTASQLGNLKIHFSSIHNGEKPYACSKCDFRASQLGDLNKHVKTHAGEKPYACDKCDYRASQLRFLKTHMITHTGEKPHACDICDNRFLQLQHLKEHMLIHTGEKHYACDRCDYRAYNKSALKTHMRIHTGEKPHACDRCDFRAVRLGHLKEHMRIHTGEKPYACEICDYRASQQGNIKIHMKTHSREKPYACDKCVFRSVHLGALRKHKSSVHGEKSYACERCDYKSSLSGDLKTHVLEAHRGTPTTSQEAQDYSHQSEAVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -