Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019175.2:6403496-6458929[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 6.8e-05 0.0056 17.2 4.2 1 23 74 96 74 96 0.99

2 7 4.4e-06 0.00036 20.9 0.9 1 23 102 124 102 124 0.96

3 7 6.3e-06 0.00052 20.4 0.5 1 23 130 152 130 152 0.98

4 7 7e-07 5.8e-05 23.4 0.2 1 23 158 180 158 180 0.98

5 7 0.00043 0.036 14.7 2.2 1 23 186 208 186 208 0.99

6 7 2.9e-05 0.0024 18.4 5.0 1 23 214 236 214 237 0.96

7 7 0.31 26 5.7 3.0 3 23 285 309 284 309 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	6.8e-05	0.0056	17.2	4.2	1	23	74	96	74	96	0.99
2	7	4.4e-06	0.00036	20.9	0.9	1	23	102	124	102	124	0.96
3	7	6.3e-06	0.00052	20.4	0.5	1	23	130	152	130	152	0.98
4	7	7e-07	5.8e-05	23.4	0.2	1	23	158	180	158	180	0.98
5	7	0.00043	0.036	14.7	2.2	1	23	186	208	186	208	0.99
6	7	2.9e-05	0.0024	18.4	5.0	1	23	214	236	214	237	0.96
7	7	0.31	26	5.7	3.0	3	23	285	309	284	309	0.84

Sequence Information

Coding Sequence: ATGAGTACTTGTTGTGAAGTCAAACTCGAAGATGACTCAGATGCGATTGTCGTGAAAGAAGAATTAGTCGTCAAACATGAACCAGAAAGCGAAGAAGAGGAAACTGATGGCGAAGTGAAGGTCGAGCCAGATGAACCTCCAATTAACCACTTTTTGGGGACCTACCGACCGCTGAGCGTGAAGTATTCAGACGCTACGCTTCAAAGTTACCTGAGTCGGTTCACCTGCGAGCTCTGTGGGTACAGAGCCAGTCAAAAATGCCACCTGAGGGAACACATGTTGACGCACTCGGATGAGAAGCCGTTTGCTTGCAATATCTGCGACTACAGGGCTATCCGCTCGAGCCACCTCAAGAGACACATGCTCGCGCACACTGGTGAAAAACCCCACGTCTGCGACGTTTGCGGCTACAAAACCGGATATCCGAGCGCTTTGAAGACGCACATTCGAACTCATTCAGGCGAGAGACCTTACGCCTGCGAAGTCTGCGGCTACAGAGTTTCTCGTTTCGGAGACCTCAAGGCTCATATGAGAACACACACTGGAGAGAAGCCGTACTCCTGCGAGTTCTGCGAATACAAATCCGGGAAGCTCAGCAATTTGAAAACACACACGAGGACGCATACAGGCGAGAAGCCCTACGAATGCGACATCTGTGAGTACAGCGTCGGCCACTGCAGCGCCCTCAAGCGACACATGAGGAAACACCACGGGATTGTAGCCGGCGCGTCTTTAAAGCTAATGTTAGGCGATGGTATATCCAGTGAAATGAGTGAAACTAAAACGCCTATGAAGAGGAAGCGGTCGCTGATGTGGCAGTACTTCGACGCCATTGACGCGTTCTACGCCATTTGCAAAATCTGCGGGGGCAAAGTCGCCTTCAGGTCGACAACTTCTAACCTCAAACGTCACATGACCGCTAAACACCCCAACGTTATTATGGATGAGAAGCAAGGCTGGAGCAAGCAAAGTTAG
Protein Sequence: MSTCCEVKLEDDSDAIVVKEELVVKHEPESEEEETDGEVKVEPDEPPINHFLGTYRPLSVKYSDATLQSYLSRFTCELCGYRASQKCHLREHMLTHSDEKPFACNICDYRAIRSSHLKRHMLAHTGEKPHVCDVCGYKTGYPSALKTHIRTHSGERPYACEVCGYRVSRFGDLKAHMRTHTGEKPYSCEFCEYKSGKLSNLKTHTRTHTGEKPYECDICEYSVGHCSALKRHMRKHHGIVAGASLKLMLGDGISSEMSETKTPMKRKRSLMWQYFDAIDAFYAICKICGGKVAFRSTTSNLKRHMTAKHPNVIMDEKQGWSKQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00145809;
90% Identity: iTF_00145809;
80% Identity: iTF_00145809;