Basic Information

Insect: Apolygus lucorum
Gene Symbol: Clamp
Assembly: GCA_009739505.2
Location: CM019170.2:15944374-16059103[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.4e-05 0.0012 19.3 3.3 1 23 1203 1225 1203 1225 0.98

2 8 1.2e-05 0.001 19.5 0.1 1 23 1236 1259 1236 1259 0.98

3 8 0.00048 0.039 14.5 2.6 1 23 1361 1383 1361 1383 0.97

4 8 1.9e-05 0.0016 18.9 0.3 1 23 1389 1411 1389 1411 0.98

5 8 5.2e-06 0.00043 20.7 0.8 1 23 1417 1439 1417 1439 0.98

6 8 5.2e-07 4.3e-05 23.9 1.9 1 23 1445 1467 1445 1467 0.99

7 8 9.1e-06 0.00076 19.9 1.6 1 23 1473 1495 1473 1495 0.99

8 8 0.00045 0.037 14.6 0.7 1 23 1501 1523 1501 1523 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.4e-05	0.0012	19.3	3.3	1	23	1203	1225	1203	1225	0.98
2	8	1.2e-05	0.001	19.5	0.1	1	23	1236	1259	1236	1259	0.98
3	8	0.00048	0.039	14.5	2.6	1	23	1361	1383	1361	1383	0.97
4	8	1.9e-05	0.0016	18.9	0.3	1	23	1389	1411	1389	1411	0.98
5	8	5.2e-06	0.00043	20.7	0.8	1	23	1417	1439	1417	1439	0.98
6	8	5.2e-07	4.3e-05	23.9	1.9	1	23	1445	1467	1445	1467	0.99
7	8	9.1e-06	0.00076	19.9	1.6	1	23	1473	1495	1473	1495	0.99
8	8	0.00045	0.037	14.6	0.7	1	23	1501	1523	1501	1523	0.96

Sequence Information

Coding Sequence: ATGGAAGGCACGGACACGGAGAACTCGATCCCTTGGGACGGAGGAGGGTCCTCGagtgagaagaagaaaaaaggcAGGCGGAAGGTCTCGGAAATTGTCTACGCCACTCTTCCGGAACATGCTATCATCGAGAAAGATGAGCAAGTGGTGGAGGAGCTCCAAGAGGCCTATAGAATCCTTCAGTCCATAAATTCTATCAAACACATCACTCCGTTCTACGAAGAACCAACGCAAGACAAGTTCGGGATGTCTTCCTATTTCACCGTAATCAAGAAACCAATGTGGCTGAACGAAGTAAGACGGAAAATCGAGTGCGGAGAATACGAGGGGCTCCATGACTTTGTGGCTGATCTCCATTTAATACTTTACAATTGCTACAAGTTTTGGGGCGAAACTCATCGAATTTCGTTCCGTGGCTACATCATAGAGCACAAAATAGAAACTCTATTGGCGGAAATTCCTAGgAGGATAAGAGAAAAATTGAAGTGTCCCGTTTCAACCGGTGACTGCGTAATCTGTGATAAAACCTCCAACGAATCCTTCGAAGATGAGGATGGCACCAACAATATTAAAGAAGACGTGGTTAATGACCCCGATATAGTTTATTACAACTCTAAAGGATATGTTTCGAAAATTGTGACAAAACTGCTGAACGAAGATGAAGAAGACGTCGAGGCCGAAGAAGAGACGGAGGAAGTCAAAGAGGAACGactgaaaatggaaaaatgggAGCAAGAAACGCTTAATAAATTGGGGGCTTCTGAAATCGCTCATACGCCAGAGTTGGTCGATATTGGGCTTTTCCTCAAGTTGACTCATGAAGTTCTGAACGTCGAAGAGATGACTCAGTATGAAGTAGAAAGGATGCTTCTCATTCCTTTGGAGTCCTCGACGCTTCAAACTCTGATGACCTCCATACTGAGCCCAGAGTGGAGGAGAAACAACTTGGACGAAACGCCTCTCATGCCGTACAACGTCTGGAACAGTAAACTCAGGCAAAGGATAACATCCTGGTTCAAAGTTTACCTAAAAAACTGCGATACAATCGAAACCTTCGAAAAATTGGGCATCGATCCTTATTTTTGGTGTGTCGTCAATCTAGTCAACCCCATGGCCACTGACATACCGTTTCACGAACTCTCATTCTATGTGCGGGTCTGGGTTTTCAAAACCCTTCTGGACAATGTATTTCATACGAACAAAACTATCGTGGACGTATTTTTGGATGAGTCGGGGGATCCCAACCGTTTCCGACACTCTTACCTCGGGAAAGGGCTCATGAACAACCACTACAAAGCTGTTCCCTCCTTTCTCCCAGAAATAAGGATTTATAAGGAAATGTCGCCTTTGCTTTCAGTTTGGACCAGTCGTTGGGATGATGTTGATCACGGCATAGAAAAGTTGCAACGGAACAGGATGACATTCATAGAAGGTAACTGTTCATTCGGTCCAAATACGAAAACTTTTGAACTTGTCGCCAGTGACTTGGAGGGCCTCAACGAACTGATCAAGTTTGGAGAGTTTCAAGACCTTCAAGACTTGGCTGCAGCTTTGATCAAGTTCAAGGAAGAAGTAGAGACTTCCCATATCCGCTGCGAGGGTCTCAAATCTATTTATAAGCAGTACATCAATTTTCATTCAAgGACTTGCGAATATTTCACCAACATGGAAAATCTCTGGTTCAGTTATACCAATGACTATAACAAACCAATAAAACAAGAGATAAAAGAAGACGATGCTTCTGAAACAGTAGTATTAGgaaaaagaagaaatactCCGAATAAATTGATGTTCAATGTGGCAGATGTGTATTCTAGTGGTTCTGGTGTTTCTGAAAACGAACAAAGTGAAAGTGACATTTCAGATTGGGAAAGTACCTATAAGAATCATCAGAGGAAGAAGAAACTCAGAACCCCGAAGAGAGTGAAGCTTCTCAAAGAAAAAGAAGagCCACCCAAAGAACCGCCAGAAAATACTCCTGCACCAACTGAAAATGGACTGCAAGATTCAGAACCAATTAAGGTGAAGAATGAGTCAGTCCTTTTGACTGATttcaaaatggagcccatggaAATCAAAGACACCATCAAGACGGAAAAAGAAGTCGATGGCCCGAGCATAGCTGGGACAGTGAGCCTTGGTCCAGTGGGAGAGGAAACGACTGTAGTCATTCTGAGCTCAGATGACGAAGAGGATGTCAAACCGCCCATTGCTAAACTCAAGTTGCGGGACGTCACTACTCTTCTAGAgtcaccaccaccaccttcagAGCCTTCTCCAAATAATTCTCTGAGCAGTCCACCAAACCATTTGATCAGCAACCTGCTGTCAAACAACATGGTCAACAACCTCCCGAACAGCATGGTCAATAATCCGTCGAACAACATGGTCAATAACCTGCCAAACAATATGGTCAATAACCTGCCCAATAACATGATGAACAATATGACTAATAACATGATGAACAACATGGTCAATAACTTGAACGTTGTTATCCCGCCTATGCCGGTGAACGCCCTGAATTCAAATCCACTGATGGGAGTGAATGCAATGATGGGAATGAATCGACCCATGTCAGTTCAGGTGCCGCCCAACCTTTACCAAGTGAGAGCTCCTCGGCAGCGGATGCAGCAGTTTAACCCACGACAAATGATGAACCGTTCACCGATGAGAGGCAGCGCTCCTCGACCTCAGATGTCTCCTAGGGCAGTTCGAATGCCAGTACCTAAACCAATAACTCCTAAGAAACCAGTTCCGAAGCCTCTACTCATGTCGCCACAGGAGTGGGCCAACACTCCAGCCCCTACATCACCAAGCACTCCACCCAATCGAGGGCGAGGTGCTGCCATTTCTCCCCGAGGAAGATCTCCTGCTACGCCACCACAGCAGCGAATGTGGGCCAACAACGTCGGAAGCCCGAGAAACAGGAATCCCATAATGCAGCAGGGACGAGGAACAGCTCCAGCCAGAACGACAGCCATTCCACCGAAAGCCTTGTTTCCAGCCACCGATTCCGCCGAAGCTGCTGAAGGCAAATTGATCATGGGACCCAACGAAAGTGGAACAGGTTACGGTTACCAGATCGTCCTCCAAGACGGCGGGATCCGTTATCTCAGTGACGCAGAAGTAAATGCGATCAAACGTCGAAACAGTGGGACGTTACCCAGACGCGTTCGAATACCACCCGACGGCTCTTTTTTGTTTACTCAGACTGAGCAGGGGCCGACTTATAGGAGTAGCTGTGTTGATAGCGATGAAAAGGTGATGTACGAACAGACCATGCAGCAGCAACAGCAGCAAgcgcagcagcagcagcagcagcaacaacagcagcagcagcaggCTCAGCAGCACCACGTCACGGAGCTGTACGCTCTGCCAAAGAAAGAAGAACCGCCCAAAACCGTAGAGTTCCCTTTCTGCTACAACGTTAACATGCTCCAGAAGGTTCAACAACATACAGCAGTCAACACGATAGTGGGGACTCCTATTCCGAACCCGAACGAGGAGAAGGGGGCGTACAGATTCGACGTATCACAGCCTTTTTCGTACAATTACGCTCTCGTGAACCAGATGTCGCTAGCAGCGGCTGCCTCCACCGCCACTTTCAAGTGTGACGTCTGCGGCCTAGTGTTTTCCCACTTGTCTCTCCTCAACCATCACAAGCGGCTTCATACTACAAATCAAACTCAGACAGAAAGGGTCTTCACTTGCGATATTTGTGGCTCCAGTTTTGCTCAAGCCGGTGATCTCAAAAACCACAAACAGACAGCTCATAACACCGTTGTCAAGACGGGGAAGTGTTGCTCCTGTGGAGTTGAGGTAGATTGTGAGCACCCCAACAAGAAGAAATCCAAGTTTCTCAAGTGCGTCAACTGCGAGGATGAGCCAAATGAGAGGGAAGAGCAGTTTGAAGGCACTCAGGAGGTCGGAACAGAGACGGACGACGGGCTCAAATCCGTTCAGCCTGGAGCCCACCCCGTCAAGCGAAGAGGGATGGCCACTGTCACGAAGTGCCACAAATGCAACGGATCGGGCATCCTCTTCGTTGGCGGTGTTCAACCTACGGTGGAGAAGCCTTTCCATTGCAACATCTGCGAAGGgacgttttcgagatattcgtCCCTTTGGAGCCATAAACGCCTCCACACGGGCGATAAGCCCTTCAAATGCGAGTTCTGTGGTCTTGCCTTCGCCCGGGCTGCCTATTTGAAGAACCACAGCCGCATTCACTCCGGCGAGCGGCCATTCAAATGTGATGTTTGTGGGATGCAGTTTTCTCAAGCTCCGCACTTGAAGAATCACGAACGCATCCACTCCGGAGAGCGACCCTACGAGTGTGAAATATGCAATAAAACGTTTGCCCGGCATTCGACGTTGTGGAACCACCGAAGGATCCACACTGGAGAGAAACCTTACCGGTGCTCCGTGTGCGGCTCTGCCTTCAACCAAGCCACCCACCTCAAAAACCACCAAAAGGTACATACTGGTGAAAAACCTCATCGCTGTGACATCTGCGAAGTTGGGTTCTCAGACCGATTCGCCCTCAAGCGGCATCGAGGGATCCACGAGAAATACGGACAAACGGCGGCTCAGCAGCAAGCAGTTCCGACACAGCCGGCGCAGCAGGTCTCGCAGGAGCAGCAAACCGTGGCCGTTGGACGGCTCGACGATCTGTACAAGTGTGACGTCACTGCTGGCATCGCTTTCCCAGGGTGTTCCCGACCTCAGGAAGCCAAATAA
Protein Sequence: MEGTDTENSIPWDGGGSSSEKKKKGRRKVSEIVYATLPEHAIIEKDEQVVEELQEAYRILQSINSIKHITPFYEEPTQDKFGMSSYFTVIKKPMWLNEVRRKIECGEYEGLHDFVADLHLILYNCYKFWGETHRISFRGYIIEHKIETLLAEIPRRIREKLKCPVSTGDCVICDKTSNESFEDEDGTNNIKEDVVNDPDIVYYNSKGYVSKIVTKLLNEDEEDVEAEEETEEVKEERLKMEKWEQETLNKLGASEIAHTPELVDIGLFLKLTHEVLNVEEMTQYEVERMLLIPLESSTLQTLMTSILSPEWRRNNLDETPLMPYNVWNSKLRQRITSWFKVYLKNCDTIETFEKLGIDPYFWCVVNLVNPMATDIPFHELSFYVRVWVFKTLLDNVFHTNKTIVDVFLDESGDPNRFRHSYLGKGLMNNHYKAVPSFLPEIRIYKEMSPLLSVWTSRWDDVDHGIEKLQRNRMTFIEGNCSFGPNTKTFELVASDLEGLNELIKFGEFQDLQDLAAALIKFKEEVETSHIRCEGLKSIYKQYINFHSRTCEYFTNMENLWFSYTNDYNKPIKQEIKEDDASETVVLGKRRNTPNKLMFNVADVYSSGSGVSENEQSESDISDWESTYKNHQRKKKLRTPKRVKLLKEKEEPPKEPPENTPAPTENGLQDSEPIKVKNESVLLTDFKMEPMEIKDTIKTEKEVDGPSIAGTVSLGPVGEETTVVILSSDDEEDVKPPIAKLKLRDVTTLLESPPPPSEPSPNNSLSSPPNHLISNLLSNNMVNNLPNSMVNNPSNNMVNNLPNNMVNNLPNNMMNNMTNNMMNNMVNNLNVVIPPMPVNALNSNPLMGVNAMMGMNRPMSVQVPPNLYQVRAPRQRMQQFNPRQMMNRSPMRGSAPRPQMSPRAVRMPVPKPITPKKPVPKPLLMSPQEWANTPAPTSPSTPPNRGRGAAISPRGRSPATPPQQRMWANNVGSPRNRNPIMQQGRGTAPARTTAIPPKALFPATDSAEAAEGKLIMGPNESGTGYGYQIVLQDGGIRYLSDAEVNAIKRRNSGTLPRRVRIPPDGSFLFTQTEQGPTYRSSCVDSDEKVMYEQTMQQQQQQAQQQQQQQQQQQQQAQQHHVTELYALPKKEEPPKTVEFPFCYNVNMLQKVQQHTAVNTIVGTPIPNPNEEKGAYRFDVSQPFSYNYALVNQMSLAAAASTATFKCDVCGLVFSHLSLLNHHKRLHTTNQTQTERVFTCDICGSSFAQAGDLKNHKQTAHNTVVKTGKCCSCGVEVDCEHPNKKKSKFLKCVNCEDEPNEREEQFEGTQEVGTETDDGLKSVQPGAHPVKRRGMATVTKCHKCNGSGILFVGGVQPTVEKPFHCNICEGTFSRYSSLWSHKRLHTGDKPFKCEFCGLAFARAAYLKNHSRIHSGERPFKCDVCGMQFSQAPHLKNHERIHSGERPYECEICNKTFARHSTLWNHRRIHTGEKPYRCSVCGSAFNQATHLKNHQKVHTGEKPHRCDICEVGFSDRFALKRHRGIHEKYGQTAAQQQAVPTQPAQQVSQEQQTVAVGRLDDLYKCDVTAGIAFPGCSRPQEAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -