Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019182.2:54761945-54792019[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00027 0.023 15.3 4.7 1 23 157 179 157 179 0.98

2 10 0.00015 0.012 16.1 4.0 1 23 185 207 185 207 0.96

3 10 2.6e-05 0.0022 18.5 6.0 1 23 213 235 213 235 0.99

4 10 2.6e-05 0.0021 18.5 3.5 1 23 241 263 241 263 0.97

5 10 3.6e-05 0.003 18.0 1.7 1 23 269 291 269 291 0.96

6 10 0.0041 0.34 11.6 0.2 1 23 297 319 297 319 0.97

7 10 0.0064 0.53 11.0 0.1 3 22 326 345 324 345 0.95

8 10 6.5e-06 0.00054 20.4 0.0 2 23 367 388 367 388 0.97

9 10 6.3e-06 0.00052 20.4 1.2 1 21 424 444 424 445 0.94

10 10 8.8e-06 0.00073 20.0 6.1 1 23 456 478 456 478 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00027	0.023	15.3	4.7	1	23	157	179	157	179	0.98
2	10	0.00015	0.012	16.1	4.0	1	23	185	207	185	207	0.96
3	10	2.6e-05	0.0022	18.5	6.0	1	23	213	235	213	235	0.99
4	10	2.6e-05	0.0021	18.5	3.5	1	23	241	263	241	263	0.97
5	10	3.6e-05	0.003	18.0	1.7	1	23	269	291	269	291	0.96
6	10	0.0041	0.34	11.6	0.2	1	23	297	319	297	319	0.97
7	10	0.0064	0.53	11.0	0.1	3	22	326	345	324	345	0.95
8	10	6.5e-06	0.00054	20.4	0.0	2	23	367	388	367	388	0.97
9	10	6.3e-06	0.00052	20.4	1.2	1	21	424	444	424	445	0.94
10	10	8.8e-06	0.00073	20.0	6.1	1	23	456	478	456	478	0.98

Sequence Information

Coding Sequence: ATGTTAAGATGTAAAGGAGATAGGATTCTAGACCCGATCAGAGCCGTGAGCGATCACCTGTCTGAGCGGATATACCTTGAATCGAATGACGACTCGTTGCCCTACGCAGACGGCAGGGCTGGCGCTTCTGTAGGACCGAGGATCAGGAAAAACGACCAGGAGTCGACCCTCAAGTTGAATGAAGGAACGAACATGACGATGAACAACAATCTCATGTTTCGGAGCATGTTTTTCATGAATGATGAGCCACGGCATTTCCTCGCGCCGCACATTCCGGTCATCCCGAACGAGTCTGAATACTTCCAGCGGAAGCAGCAACACATTTTCCCCAAGGATAATACGGTCAATACGCCCAATACTAACAATGCAGGGATAACTCACCAGTTGAACACGGTCGCCTCGCAAACCGTCACTGGGGAAATATCGACGCAGACCGCTTCCAAGCCTCAGCCCGTCAAACAGCGACCTCACACCTGCGAAGAGTGCGGCAAAACGTTTCTCCTCAAACATCACTTGGCGACGCACATTCGGGTTCACACGGGAGAGCGGCCCCACGTTTGTCCTGAATGCGGCAAAACCTTCGCCCTCAAGCACTGCCTGTCCACTCATCTCCTCCTCCATAGTGCTGACAGACCCTACAAGTGTAACGAATGCAATAAGTCCTTCACTCTCAAACATCACCTGGTGAGCCATGAGAAAATGCACACCCGTGACCGCCCATTTGAATGTCGAGAATGCGGGCAGACATTTGCGCAGAAACGGCACCTCAGCACGCACCTGAAGTTTCATTCTGGGGAACGGCCTTTCTCCTGTCAGGTTTGCGGAGAAACATTTACGCGAGAAGAGCACCTTGTGATGCATTCGCGATTCCACGGAGGCCTCCAGCCCTACATATGCTCGGACTGCGGCGCCGGATTCCTGAGAAAGTTCCAACTGGTGGAACACGAGCGTCAACACGGTCGCTGTCCTGACGCCTGTCCCACCTGCGGCAAGGAATTCCTGCAGAAAAGGACGCTGCTGCTTCACGTCCGCACGTGTGGCATCGCTCCGAATCCCCACACGCAACCTATTCTTGAACAAACGTCTCAGCCTACTAGGGTTTGCAAGGAATGCGGTGAAGCTTTTTCGAGCGCTGAAGGTCTCGCTCTTCACATGCGGCTGCACATTGGGGATCACAGCTTCTTGTCGGATATCTGCAGTTTAGCGGCTTCCCTGAAACAGGCAGCTGGCACGCAAACTCCACATCTAGCGGTCCTCAACAAGAAAAATCACGTTTGTCCCGAATGCAACAGAAGTTTCACGCAAAAGCACGGACTGAATCAGCATCTTCTTCGATACCCCAATGGAGCGTGCAAGTTGAAACCCTTTCGGTGTGATAAGTGTGGGAAGTGCTTCTCACAGAAGAATCATTTGGTGCTTCACGAGCGGCAACATATGGAGCCGAGCGAACGAAGTGAACTCAAACATCGGAACCAACATAATAATAGTAGCAGTAGTAGTAACAATAATAGTGTGAATAACGGTTCTATGGAGAATGCACAGGCGTCGTTGATGAGGCAGTTGGAGTTAGGAGGAGTGAGGCAAGTTCAAGTGAAtcagatgactcatcaacagaAAACTCATTTGGTCCTTCACGAAAGGCAGATGGATGCTATGGAACGAGCCGATCTTAATAAGCATAGAGGTCTCTCTGACAACAATCAAATGATGCGCCACATGCAGTTATCCGAACATGAGCAACAGCTCCAGCAGCAGCAACAACAACAGCAGCAGCAACAGCAGTCGCAACAGCAAATTGCCACTCTGAAAACTCACCACATCCTTCACAACCGGATGGACAGTCAAGAGATCAAACATGAGGTTCTGGACAATCAGAGCATCCTGATGAGGCACCTGGAGCTTGCCGAGGCTCAAAAGTCTCagcagcaacaacaacaacccCAACAGCAGCTGCAGCACATTAAGCAAAACCACCACATACTCCACGACCGCCAAGTGTCTCCAGCGGAGCGACCCGAAGTGTCGCTCAAACACCGAAATATGGAGCAAATGGACTCCACGCAGACCTCCATGATGAGGCATTTAGACCATAACTTAGCACATAACCCACAGTAA
Protein Sequence: MLRCKGDRILDPIRAVSDHLSERIYLESNDDSLPYADGRAGASVGPRIRKNDQESTLKLNEGTNMTMNNNLMFRSMFFMNDEPRHFLAPHIPVIPNESEYFQRKQQHIFPKDNTVNTPNTNNAGITHQLNTVASQTVTGEISTQTASKPQPVKQRPHTCEECGKTFLLKHHLATHIRVHTGERPHVCPECGKTFALKHCLSTHLLLHSADRPYKCNECNKSFTLKHHLVSHEKMHTRDRPFECRECGQTFAQKRHLSTHLKFHSGERPFSCQVCGETFTREEHLVMHSRFHGGLQPYICSDCGAGFLRKFQLVEHERQHGRCPDACPTCGKEFLQKRTLLLHVRTCGIAPNPHTQPILEQTSQPTRVCKECGEAFSSAEGLALHMRLHIGDHSFLSDICSLAASLKQAAGTQTPHLAVLNKKNHVCPECNRSFTQKHGLNQHLLRYPNGACKLKPFRCDKCGKCFSQKNHLVLHERQHMEPSERSELKHRNQHNNSSSSSNNNSVNNGSMENAQASLMRQLELGGVRQVQVNQMTHQQKTHLVLHERQMDAMERADLNKHRGLSDNNQMMRHMQLSEHEQQLQQQQQQQQQQQQSQQQIATLKTHHILHNRMDSQEIKHEVLDNQSILMRHLELAEAQKSQQQQQQPQQQLQHIKQNHHILHDRQVSPAERPEVSLKHRNMEQMDSTQTSMMRHLDHNLAHNPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00930683; iTF_00884511; iTF_01365806;
90% Identity: iTF_00884511;
80% Identity: -