Basic Information

Insect: Apolygus lucorum
Gene Symbol: spoplb
Assembly: GCA_009739505.2
Location: CM019176.2:68797502-68819345[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.4e-05 0.0028 18.1 0.2 2 23 475 496 474 496 0.96

2 9 6e-05 0.005 17.4 0.2 1 23 502 524 502 524 0.99

3 9 0.00015 0.013 16.1 0.5 1 23 530 552 530 552 0.99

4 9 0.00025 0.021 15.4 0.3 1 23 558 580 558 580 0.98

5 9 0.00028 0.023 15.2 1.9 1 23 593 615 593 615 0.98

6 9 1.4e-05 0.0012 19.3 0.2 1 23 621 643 621 643 0.98

7 9 0.017 1.4 9.7 3.1 1 23 649 671 649 671 0.97

8 9 0.00071 0.059 14.0 0.4 1 23 677 699 677 699 0.98

9 9 1.2e-05 0.001 19.5 0.9 1 23 705 727 705 727 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.4e-05	0.0028	18.1	0.2	2	23	475	496	474	496	0.96
2	9	6e-05	0.005	17.4	0.2	1	23	502	524	502	524	0.99
3	9	0.00015	0.013	16.1	0.5	1	23	530	552	530	552	0.99
4	9	0.00025	0.021	15.4	0.3	1	23	558	580	558	580	0.98
5	9	0.00028	0.023	15.2	1.9	1	23	593	615	593	615	0.98
6	9	1.4e-05	0.0012	19.3	0.2	1	23	621	643	621	643	0.98
7	9	0.017	1.4	9.7	3.1	1	23	649	671	649	671	0.97
8	9	0.00071	0.059	14.0	0.4	1	23	677	699	677	699	0.98
9	9	1.2e-05	0.001	19.5	0.9	1	23	705	727	705	727	0.99

Sequence Information

Coding Sequence: ATGTCTCAGTGGGCAAGAAGTAAGCACGACTGGCAGCTGACCAAGTGTTCTATCAAAGATAGATTCCAAGAACTTTTAAGGCTCTCCCAATGGACCGATTGCACTTTTTCAGTCGGTGAAGATAATGTTGAAGTGATTTGCTGCCATAAATTAGTACTAGCTGCAAGCTCCCCTGTTTTCGAAGCGTTATTCTTCGGAGGTTTATCCGAACCAAAAGAGGTTATCAGGGTACCGGATGTTGAGCCCTATGTTTTTCGTATATTCTTGAACTACATCTACTCCGACTCTTTGGATTTGCAAAATATTGATGAAGCCGGAGGATTGCTTTATGTAAGCAAAAAATACATCATGCCTCAACTATCGGAAATATGTCTTTCTTACTTGATTGAGAACACCAGCATTTGCACTCTATGGGATGTCCTTGCAATCGCCGAAGCTTTGAACGAGGAAGAGCTTATGGCTGTCTGCCTGAAGGTCATGTCGCGTTATTCTTACAAAATCTGGTCGACTAGTAGTGATGACCACCTGAGCAAGAATACGCTGCTTCGTCTTCTTGATCTTCGCCAGATGAACATGAAGGATGTTGATCTATTCAAGTATTTATTAGATTGGGCAGCAAAAGAGTGTTCGATTGAAGAAGTGTTGCCATCAACTCAAAATGTGCGTTCCTGCCTCAAGTCGTTCGGAGCGCTTGAAAAAATTAGATTCCTCACGTTCACTCCCAGAGAGTTTTCTGAAGTTGCGGTACCTTCGGGGGTGTTGACCAAAGAAGAATGCGATTTATTCGAATCGCTGATTGGCGGTGAAATGGTGGAGCAACTTGAGATGGAAATAGTTCGAACGGGATTTTCATCGAATGCCGAACCGAGAAGTTCCATAACGCCTCTCATTTGGAGATGTACTCGAGAGATTGCCAGAGGTGACCGATTCTGGATTTACATTGGACCCGTTCAAGTTGGCATTACATCGAGCTCTCGTGTCCTGGTCACCGGGTTTGAGATAGTCACCCGAATCTCCACCATGGGTGCCCCCAAAGTGTGGCCCCACTCGGGGCACACTTATCGCGAACGACTTGTTGCGTTTGTTAAAGACCAGAGTGATAATATCTTGTGTAAAACCGATCACGATGAAAATGTAGAGTTCAACTCGCATCAGATCGTCTCACTGTCGCACCCAGTTTGGTTTGAGCCAGGAACTAAATACGTAGTGCATTTTGACTTCCCTTCAGGCCAGTACCCTCTATCACATTATGCAGAAACGGCACTAGCAAAAGTATCTAGGGAAACCATGGAGGGTTCTTCAGACAAAGAAGAGTCTCATCAAATCGGAGAAATGGTCACGACAAAGATCGATGAAGGTCAACCTCAAAGTAATCCAGTGACCTTGGAGGGAGGCGCATTGTTTCCAGatGGAAAGAGCTGCATATGTGACGTGTGTGGCTACAAGGCTGTTCAGCCATCAGCATTGAAAACACATATGAGAATCCACACAGgAGAGAAACCTTACACTTGTGACGTATGTGACTACAGAGCAGGGCAACTTGGTAATTTGAAAAGACACTTGATGACTCACAAAGGAGAGAAGCCGTTCACCTGCGATATTTGTGAGTACCGCACTGCAGAACTTAGTAAACTGAAGGTACACCTCCGAACTCATACAGGAGAGAAGCCCTTTTCCTGCGATATTTGCGACTACAAAGCAGCACGCAAATCGTCAGTTGATCTTCACATGCGAACGCACATGGGTACCCACTGGCTAGTTAGTGGAGTAAAGCCGTATGCGTGTGAGATTTGTCAGTTCAGAGCAACAAGTTCACAACATCTTAAGACTCACATCAGGTCACATACAGGAGAGAAGCCTTTCACCTGTACCGAATGTGATTACCGAACTAGGGATCCGTCTGGTTTGTGGGCGCACAGGAAGGTTCATACAGGTGAGAAGCCGTACGCTTGTGATTCCTGTACCTATAAAGCTGCGCATTCACATAACCTGAAGGTGCACAAGAGGATACATACAGGTGAGAAGCCATTCACGTGTGATGTATGTGGCTACCGAGCTGGGCGActcaataatttgaaattgcacAAAATGACACATTCAGGTGAAAAACCATTCAAGTGCCCGACCTGTAACTACCAAGCTGCTCGAAAGTCCTCCTTGGTGCAACATATGAAGACACATTCAGCTAATGTTGCTGAAGACACGTGTAGTAACGTAGTTGAAGGCTCGTGTAGTAATGCAGCTAGTGTAGCTGGAGAGACATTAGACAACACTCCTGGAGAAGCAAAAGACAACGTTCGCCCTCCAGAATGA
Protein Sequence: MSQWARSKHDWQLTKCSIKDRFQELLRLSQWTDCTFSVGEDNVEVICCHKLVLAASSPVFEALFFGGLSEPKEVIRVPDVEPYVFRIFLNYIYSDSLDLQNIDEAGGLLYVSKKYIMPQLSEICLSYLIENTSICTLWDVLAIAEALNEEELMAVCLKVMSRYSYKIWSTSSDDHLSKNTLLRLLDLRQMNMKDVDLFKYLLDWAAKECSIEEVLPSTQNVRSCLKSFGALEKIRFLTFTPREFSEVAVPSGVLTKEECDLFESLIGGEMVEQLEMEIVRTGFSSNAEPRSSITPLIWRCTREIARGDRFWIYIGPVQVGITSSSRVLVTGFEIVTRISTMGAPKVWPHSGHTYRERLVAFVKDQSDNILCKTDHDENVEFNSHQIVSLSHPVWFEPGTKYVVHFDFPSGQYPLSHYAETALAKVSRETMEGSSDKEESHQIGEMVTTKIDEGQPQSNPVTLEGGALFPDGKSCICDVCGYKAVQPSALKTHMRIHTGEKPYTCDVCDYRAGQLGNLKRHLMTHKGEKPFTCDICEYRTAELSKLKVHLRTHTGEKPFSCDICDYKAARKSSVDLHMRTHMGTHWLVSGVKPYACEICQFRATSSQHLKTHIRSHTGEKPFTCTECDYRTRDPSGLWAHRKVHTGEKPYACDSCTYKAAHSHNLKVHKRIHTGEKPFTCDVCGYRAGRLNNLKLHKMTHSGEKPFKCPTCNYQAARKSSLVQHMKTHSANVAEDTCSNVVEGSCSNAASVAGETLDNTPGEAKDNVRPPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00145757;
90% Identity: iTF_00145757;
80% Identity: iTF_00145757;