Aluc003982.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- lola
- Assembly
- GCA_009739505.2
- Location
- CM019169.2:27954100-27983439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.7e-05 0.0056 17.2 2.7 1 20 95 114 95 116 0.94 2 10 0.00013 0.011 16.3 0.4 1 20 121 140 121 142 0.95 3 10 0.0051 0.42 11.3 0.1 5 20 161 176 150 178 0.79 4 10 2.8e-05 0.0023 18.4 2.2 1 20 193 212 193 214 0.95 5 10 3.5e-06 0.00029 21.2 1.5 1 20 225 244 225 246 0.95 6 10 3.2e-05 0.0026 18.2 2.6 1 20 257 276 257 278 0.93 7 10 0.13 11 6.9 4.8 1 19 286 304 286 309 0.89 8 10 7.2e-06 0.0006 20.2 3.1 1 21 323 343 323 344 0.96 9 10 7.3e-06 0.00061 20.2 0.8 1 21 466 486 466 487 0.95 10 10 0.0046 0.38 11.4 5.2 1 23 495 518 495 518 0.96
Sequence Information
- Coding Sequence
- ATGAGCTTTCACCCGATCCTTCCCTTAAGCAGAAATAAGCGATCTTCTACTGCCCGAGGTCTTTCAAATCTCTCGGCTAATAAGAGGGTCTTACCCGGAATTCGGTACTCGAGGACGGTCGACCCGAATAGAACGACGTTTTCAAACAAAGGAAAATTTTTCCTGAATCACACGGGAAAGTTACCAGTACCAcgtgggattcccaagatggAGGTGGATGAATCCCACGTGCGCCTACTACGTTTCCAGGCGCCTTCTATTGTCCTAAATGCTCGAAGCGCCTTCTCGTGCCCAAATTGTTTAAAATCCTACAACAGGAAGCACAATTTGAACCGGCACGTTCTTCATGAGTGCGGCAACTACATGTGTACAAACTGTATGAAATCCTATAGCAGAAAGGATGGGTTGAAGCGGCACATTGAACTCGAATGCGGGGTTCCACCGAAATTTGAATGCGAACTTTATAACTCACCTCGTCAGAAATGTTTGAAAGAATTCGCAAGCAATACAAATTTGAAGCGACACATTGAAGAAGTGTGCGGAGTCACTCCAAAATCCCACCACTTCACTtATCACTTCACTtgtcaaaaatgttcaaaacaattcggaagaaaaacaCATTTGAAGCGACACATTGAAGAAGTGTGCGGAATCACTGCTAAATCCCATCACTTCACTtgtcaaaaatgttcaaaacaattcacaagcaataaaaatttgaagcgACACATTGAAGAAGTGTGCGGAGTCACTCCAAAATCCCAACAACACACATGTcagaaatgttcaaaacaattcgcgagaaaaacaaatttgaagCGACACGTTGAAAAGTGTGTGGTTGTCACACCTAAATTCGCTTGTGAGCATTGTTCCTATAGATCCAAACGGAATCGTGACTTGAAGGTTCACTGTGAAAAACTCCATTCGCTAAAGGCTCAGATTCAAACGCAATGTACACGTCCTTTCACTTGCCACCATTGTTTGAAAACTTTCGCTAGGAAAGACAATTGGAAGCGGCATATTAAGGATGTATGTGAACTTTCGGCCCAACCGAGATTCGCCTGTCTTTCTCGTAGTGAAGAGTGTCCATTTTATGGAGATGCCCATAGCGTGCTTCCTAAGAGCTCTTCCCTCGAGGTTTCATTGTCACCGTTGCGGCCGATCGTACAGCAGGAAGGACCACCTTCAACGTCATCTCAACAATCCACATGCGGTTCCACTGTCATCGTTGTTCAAGATCGTACGGCCGGAAGGACCACCTCACTCGCCACCTCAAGTTCGAGTGCGGGAAAGAACCTCAGTTTGCCTGCCCTTTCTGCCCCTATCGGGCAAAACACAAACATAACTTCAAAACTCACGTCGCCTTCAAACACAAGGACCAAGCAATCGAGCTACCGTTGTGTCGTTTGTGGGAAATCATACAGACGAAAGAATACGCTAATGCGGCACTGGAAATTTGAGTGCGGGAAAGAGCCGCAGTTTTCGTGCCCGTATTGTCCCTTCAAAGCCAAACATAAACACAATTACAAGCAGCACCTCATCATGAGACATTCGGACGAATGTGCGATGATTGCTCCGAGCGTGCGCGTTGGGGCATTCGAGTCCTGA
- Protein Sequence
- MSFHPILPLSRNKRSSTARGLSNLSANKRVLPGIRYSRTVDPNRTTFSNKGKFFLNHTGKLPVPRGIPKMEVDESHVRLLRFQAPSIVLNARSAFSCPNCLKSYNRKHNLNRHVLHECGNYMCTNCMKSYSRKDGLKRHIELECGVPPKFECELYNSPRQKCLKEFASNTNLKRHIEEVCGVTPKSHHFTYHFTCQKCSKQFGRKTHLKRHIEEVCGITAKSHHFTCQKCSKQFTSNKNLKRHIEEVCGVTPKSQQHTCQKCSKQFARKTNLKRHVEKCVVVTPKFACEHCSYRSKRNRDLKVHCEKLHSLKAQIQTQCTRPFTCHHCLKTFARKDNWKRHIKDVCELSAQPRFACLSRSEECPFYGDAHSVLPKSSSLEVSLSPLRPIVQQEGPPSTSSQQSTCGSTVIVVQDRTAGRTTSLATSSSSAGKNLSLPALSAPIGQNTNITSKLTSPSNTRTKQSSYRCVVCGKSYRRKNTLMRHWKFECGKEPQFSCPYCPFKAKHKHNYKQHLIMRHSDECAMIAPSVRVGAFES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -