Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019169.2:48468426-48570850[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-06 0.00016 22.1 1.7 1 23 225 247 225 247 0.98

2 8 7.3e-08 6e-06 26.5 2.5 3 23 255 275 253 275 0.98

3 8 0.004 0.33 11.6 0.5 1 23 281 303 281 303 0.93

4 8 1.4e-05 0.0011 19.4 1.7 2 23 402 423 401 423 0.96

5 8 1.4e-08 1.2e-06 28.8 1.7 1 23 429 451 429 451 0.98

6 8 0.00083 0.069 13.8 0.6 3 23 459 479 457 479 0.97

7 8 8.8e-05 0.0073 16.8 0.8 1 23 485 507 485 507 0.99

8 8 0.0032 0.26 11.9 0.9 1 23 513 537 513 537 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-06	0.00016	22.1	1.7	1	23	225	247	225	247	0.98
2	8	7.3e-08	6e-06	26.5	2.5	3	23	255	275	253	275	0.98
3	8	0.004	0.33	11.6	0.5	1	23	281	303	281	303	0.93
4	8	1.4e-05	0.0011	19.4	1.7	2	23	402	423	401	423	0.96
5	8	1.4e-08	1.2e-06	28.8	1.7	1	23	429	451	429	451	0.98
6	8	0.00083	0.069	13.8	0.6	3	23	459	479	457	479	0.97
7	8	8.8e-05	0.0073	16.8	0.8	1	23	485	507	485	507	0.99
8	8	0.0032	0.26	11.9	0.9	1	23	513	537	513	537	0.95

Sequence Information

Coding Sequence: ATGGCCATCAACTTCTCAGCATCATTTGCGGCGTGTCTCGCTGCGGGGCTCAAAGTCCCAAGGCAGTTCATGTATTGCATCGCCCAAGATGCTGGAGCGCCGTACGTCGTGTACAAAGACGGAGCCGGGATGCCCCACAACGGCCTCAACGGCGCACCGCCGCCCCCAAACGGGAGCGCCGGAGGCGGCAACGGTCCCGCGAACGGCGCCGGGGGCGGCGAATGGAACGAACAGTTTCCCGCCAGCCCGCAAGAGTCCGCCCCCACCCCTCATCAGCAGCCCTCCCCGTCGCCTCCCTACCCTCAGCAGCAGCACACCCCCGCCTCCAACATGCCCGTTTGTTCCGAAGGGACGCCGCCGCATAACACTCCGCAGCCGCCTCCGCCCGAGCAGGAGAACACTCAGGGCACTCAGGAGACGGACATGCAGTGCGAGATGCCCAACTACTACCCAGGGCCGCCTCGCCACCACGTCCTGTCGCCCACCACCTTCATGTCCTACCTCAAGCAGCCCGTCATGCTCACCTCCCTCAACTCCTCGGATCAGCCCTCCGAGTTCCACTCAGGGATGCCGGACCTGCTGGGCGGAAACCTCAAAGGGCAGATGCAGTCTGGCAACGCTCAGGGCTCGCAGGGGATGAACGGGTCGAGCAAGAACTGCGAGCTGCGCCTCTTCAAGTGCCTCACCTGCGGGAAGGACTTCAAGCAGAAGTCGACGTTGCTGCAGCACGAGAGGATCCACACGGATTCCAGACCCTATGGCTGCACAGAATGTGGCAAAAGGTTCCGTCAACAAAGCCACCTGACGCAGCACCTGAGGATCCACGCTAACGAAAAGCCATTCGCCTGTATTTACTGTGAAAGGACTTTCAGGCAAAGAGCTATTCTGAATCAGCACCTCAGGATACATTCCGACGTGAGTCCACATCTCGTGTACAAGAATGGTCAGCTGTGGCCCCAAGACGTACCTTTCCCTCAACAGGACAACAAGGAAGGGCTAATCGGGCTCACGCAGCAGCAGCAGGCCTTCGAAAACGGCCAGCAGGATCCCAGCACCCAGTGCTTCCCTGATGGTACCATCAACCAGTTCCCGGCATACTTTAAGGACGCTAAAGGGAACACCCACGGAGTCATAGGCCCCAACGGTAAGGGGATACCCGAGCTGATACAGTCCGGGCGGCAAGCGGGGATGCCTCTGTACGTGCGGTGCCCGATCTGTCAGAAGGAGTTCAAGCAGAAGTCGACCTTGCTGCAGCACGGGTGCATTCACATAGAGTCGCGGCCGTACCCCTGCGCCGAGTGCGGGAAGCGGTTCAGGCAGCAGAGCCACCTGACGCAGCACCTGAGGATCCACACGAATGAGAAGCCGTACGGCTGTTTGTACTGTGGGAGGAACTTCAGGCAGCGCACGATACTCAACCAGCACGTCCGAATCCATACAGGCGAAAAACCCTACAAATGCGCCCAGTGTGGCAAGGACTTCCGGCAAAAGGCCATCCTCGATCAGCACACCCGCACCCACCAAGGCGATCGGCCGTTCTGCTGCCCGATGGCCAACTGCCGCAGAAGGTTCGCCTCCGAGCCCGAACTGAAGCGACACGTGGACAACCACATGAATCCGCACGCTGGCAAACGACGAACGATCCAGCCGCCGCAGCCGGTCGTGAAACCCGAACTGTACCTTCCTCAGTGCTACACGCCTGCGGCAGCAGCAGCGGCTGCGTTCCAGCAGCAGTACACGATGTCCCAGCTTCTCCAACCTCCTCCCCAGAGCGCTGCGCTCGTTCAGTGA
Protein Sequence: MAINFSASFAACLAAGLKVPRQFMYCIAQDAGAPYVVYKDGAGMPHNGLNGAPPPPNGSAGGGNGPANGAGGGEWNEQFPASPQESAPTPHQQPSPSPPYPQQQHTPASNMPVCSEGTPPHNTPQPPPPEQENTQGTQETDMQCEMPNYYPGPPRHHVLSPTTFMSYLKQPVMLTSLNSSDQPSEFHSGMPDLLGGNLKGQMQSGNAQGSQGMNGSSKNCELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCTECGKRFRQQSHLTQHLRIHANEKPFACIYCERTFRQRAILNQHLRIHSDVSPHLVYKNGQLWPQDVPFPQQDNKEGLIGLTQQQQAFENGQQDPSTQCFPDGTINQFPAYFKDAKGNTHGVIGPNGKGIPELIQSGRQAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCAECGKRFRQQSHLTQHLRIHTNEKPYGCLYCGRNFRQRTILNQHVRIHTGEKPYKCAQCGKDFRQKAILDQHTRTHQGDRPFCCPMANCRRRFASEPELKRHVDNHMNPHAGKRRTIQPPQPVVKPELYLPQCYTPAAAAAAAFQQQYTMSQLLQPPPQSAALVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00386634;
90% Identity: iTF_01365799;
80% Identity: -