Aluc016062.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019176.2:41443778-41447204[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00054 0.045 14.3 0.4 3 23 256 276 254 276 0.97 2 20 0.0068 0.57 10.9 0.5 1 23 282 304 282 304 0.97 3 20 0.22 18 6.2 3.0 1 23 310 333 310 333 0.97 4 20 0.11 9.5 7.0 0.0 1 23 369 391 369 391 0.97 5 20 0.013 1 10.1 0.2 1 23 397 420 397 420 0.96 6 20 0.0028 0.23 12.1 2.0 1 23 477 499 477 499 0.97 7 20 0.0078 0.64 10.7 1.7 1 23 505 527 505 527 0.97 8 20 0.0012 0.096 13.3 0.3 1 23 533 556 533 556 0.98 9 20 0.00011 0.0091 16.5 0.6 1 23 593 615 593 615 0.98 10 20 0.18 15 6.4 1.3 1 20 621 640 621 643 0.93 11 20 0.0031 0.26 11.9 1.2 1 23 649 672 649 672 0.97 12 20 0.00039 0.032 14.8 0.6 1 23 691 713 691 713 0.97 13 20 0.07 5.8 7.7 0.3 1 23 719 741 719 741 0.94 14 20 0.0015 0.13 12.9 2.2 1 23 747 770 747 770 0.98 15 20 1.7 1.4e+02 3.4 2.2 1 23 806 828 806 828 0.96 16 20 0.015 1.2 9.8 1.9 1 23 834 856 834 856 0.97 17 20 0.019 1.6 9.5 0.3 1 23 862 885 862 885 0.97 18 20 0.00097 0.081 13.5 1.0 1 20 921 940 921 943 0.92 19 20 0.0042 0.35 11.6 0.6 1 23 949 972 949 972 0.92 20 20 0.00082 0.068 13.8 1.1 1 23 978 1001 978 1001 0.98
Sequence Information
- Coding Sequence
- ATGGCGTCTACAGTGATAAGTGAAGAGGAGAGGATGATTGGAGAATATCGGATCATGAAAGAGGAGATATGTGATGATAAGAGTTTCGTTGAGGAACATCAAATCAATGAAGGAATAATGTGTAACGATGAGGGACCCGTGAATGAGAAAACGCCTTCAAATCTGAAAGTGACAACACCCACTCATTTCAAATGTATTTGTAAACCTATTCATCTTGAATGTATTTGTAAGAGCGAGGGCGAGGGCATGACAGGTGAACTACAACAGCACAAGGAGGAGGACATTACTGACGAAATAATGAGCGATTCTTTACAATACTACATTAATACAACTGTGAATATTCCTTTCACATTTAGTTGTGAAAGCTTGGACGAAGGGGTAATTGATACGAACCATTTAAACGTGGAACAACAGATCAAAGAAGAGGAGATGAAGATTGACAATAGAATGTTACCTGAAGACGAAATATTGAGATGGACAAATAGGGAAGGAGAGGTCCAACCGTCAAATGACCTGCAAGATATAGCTATGCAGGTAGATAGTCTAACAACAAGTCAGAATATGTGTCAGGAGAGAGAACACACTGGCAAGATACCATCCAGCTGTTATAGTAGTAGTAAGATCGAAACAACTATTCGAGGAGATTTGCAACAACGACACAGCGGGGAAATTCACACTCAGTGTAGCGATTATACGGCAAAACGCAAAGCAAATATGGCACGAAAGAGTTATAGTAGCAAAATTCGAGATAGAAAGCGGTGGGCCTGTCACATTTGTAAATTCAGGGGAGTGACTCCATCTGACCTGAAGCTTCACCTGCGGGTTCACAATGGTGAAAAGCCCTATGCCTGCAACAGTTGTGATTTCAGGTCAGCGCGACTGTACAATCTAAATGTCCACAAGATCTCCCACATTAGCGGAAAACTGTActcctgtgataaatgtgaatACAAATCTGGAACTCGGAGAGATCTGACTTGTCACATAAGGAAAATACACACCAACGAAGAGCGCAGTAGCAGTTTGTGTGACAATGATACAACAAAGAGAGATCCGGAGCGTCCCAAAACGAGTCCCATCGACAATGACTGTGATACAAAGCCGTATGCTTGTGATATTTGTGATTTCAGAGCAGTGGAATTGCAGGATCTGAATGTTCATAGGATCAGTCACATTAGGGAAACCCCGTACTCCTGTGATAGTTGTGAATACAGAACTGGAACTCGAAGAGAGCTGAACGCACACATCACGATCGTACACACCTACCAGAAGCTTCTTAACAGTTTGCGTGACGTTGATAAGGCAAAAGGAGATCCGCAGCGTCCCCATAAGAGTAAAATTGCCAATACCAGTGTTAATGATACAACAAAGGGTGATCCGGAGCGTCCCAAAACGAGTCCCACCGACAATGTCTGTGTTACAAAGCCGTATGCCTGTGATAGTTGTGATTTTAGAACAAGAACTAAGCGAAGTCTGAACCGACATTTCAACATTCACATTGGTAAAAAGTCTTATTTCTGTGAGAGTTGTGATTTCAAAACAGCGCGACTGCAAAATCTGACTACCCACAGGATGAGTCACACAGGACAAAACCAGTATTCCTGTGATAGTTGTGGATACATAACTGGAGCTCGAAGAAATCTGGTCAGACATATGAGGAAAATACACATCAAAGAGAAGCCCAGTAGAAGTTTTTGTGACGATGATAGGGCAAAAAAAAGGGGTCCTCAGAGTCCCAAAACGAATCTCACCAGCAATGACTGTAATGCAAAGTCGTATCCCTGTGATTTTTGTGAATTTGCTTCAACAACTCAGAGGAACCTTAAACGTCATCTCATGATCCACACAGGTGAAAAGCCCTTCGCTTGTGACATTTGTGATTTCAGGTCAGCACGACTGCAAAATCTGAGTGTCCACAAGTTATGTCACTTTAGCGGGACAATGTACTACTGTGATAGTTGCGAATATAAAACTGGAACTCGAAGAGATTTGACTAAACacataaataaaatacacaccAACGATGAGCCCAGTAACAGTCTCACGGGCAATGACAGTGATTCTAAGCCGTATGCCTGTAATTCTTgtaaatttgcaacaaaaaatctgGCAAACCTTAAACGCCACCTAATGGTTCACACTGGTGAAAAGCCCTACGCTTGTGACATTTGTGATTTCAGGTCATTGCAACGGAATAATCTCAACGTGCACAGGATGGGTCACATCACCGGGAAACTATACTACTGTGATAGTTGCAAATACAGAACTGGTACTCGAAGAGATCTGAACAAACACATAAAGACAATGCACATCAGCGATGAGCTCAGTAACAATTTATGTGACGAAGATAGAAGAAAACGAGACCCAGAGTGTCCCATTACGAGTCCAACTGTCAATTTCTGTGATGCAGAgacctatgcctgtgatagttGTGATTTCAAGACCAGAACTTTGAACAACCTGGACTGTCATCTAAAGATTCACAGAGGTGACAAACCCTATTTCTGTGACAGTTGTGACTTTAGAACAGATCGACAGCAATACCTGACTGTCCACAGGATGAGTCACACAGGCGAAACTCCGTATTCCTGTGATAGTTGTGAATACATAACTGGAGCTCGAAGAAATCTGATAAGACACTTGAGGAAAGAACACAACGAACAGAAGCCCAGTAGACGTTTGTGTGACGATGATGAGGCAAAAAGGGGTCTTCACCGCCCCAAAACGAGTCTCACCAGCGATGACTGTGATGCAAGGCCGTTTGCCTGTGATTTTTGCGAATTTACTTCAAGAACCAAGAGCAACCTTAAGCGCCATCTTCCGATTCACACAGgtgaaaagccctacgcctgcaACATTTGTGATTTCAGGTCAGCACGACTGCAAAATCTGCAAGCCCACAAGACAAACAAACACGCTACCGAAAGCCCGTACTCCTGTGATAGTTGTGACTACAAAACTGAAACTCAACTGGGCCTGAAACGACACATCAGAAGATCACACAGGCAGTAA
- Protein Sequence
- MASTVISEEERMIGEYRIMKEEICDDKSFVEEHQINEGIMCNDEGPVNEKTPSNLKVTTPTHFKCICKPIHLECICKSEGEGMTGELQQHKEEDITDEIMSDSLQYYINTTVNIPFTFSCESLDEGVIDTNHLNVEQQIKEEEMKIDNRMLPEDEILRWTNREGEVQPSNDLQDIAMQVDSLTTSQNMCQEREHTGKIPSSCYSSSKIETTIRGDLQQRHSGEIHTQCSDYTAKRKANMARKSYSSKIRDRKRWACHICKFRGVTPSDLKLHLRVHNGEKPYACNSCDFRSARLYNLNVHKISHISGKLYSCDKCEYKSGTRRDLTCHIRKIHTNEERSSSLCDNDTTKRDPERPKTSPIDNDCDTKPYACDICDFRAVELQDLNVHRISHIRETPYSCDSCEYRTGTRRELNAHITIVHTYQKLLNSLRDVDKAKGDPQRPHKSKIANTSVNDTTKGDPERPKTSPTDNVCVTKPYACDSCDFRTRTKRSLNRHFNIHIGKKSYFCESCDFKTARLQNLTTHRMSHTGQNQYSCDSCGYITGARRNLVRHMRKIHIKEKPSRSFCDDDRAKKRGPQSPKTNLTSNDCNAKSYPCDFCEFASTTQRNLKRHLMIHTGEKPFACDICDFRSARLQNLSVHKLCHFSGTMYYCDSCEYKTGTRRDLTKHINKIHTNDEPSNSLTGNDSDSKPYACNSCKFATKNLANLKRHLMVHTGEKPYACDICDFRSLQRNNLNVHRMGHITGKLYYCDSCKYRTGTRRDLNKHIKTMHISDELSNNLCDEDRRKRDPECPITSPTVNFCDAETYACDSCDFKTRTLNNLDCHLKIHRGDKPYFCDSCDFRTDRQQYLTVHRMSHTGETPYSCDSCEYITGARRNLIRHLRKEHNEQKPSRRLCDDDEAKRGLHRPKTSLTSDDCDARPFACDFCEFTSRTKSNLKRHLPIHTGEKPYACNICDFRSARLQNLQAHKTNKHATESPYSCDSCDYKTETQLGLKRHIRRSHRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -