Aluc018048.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019179.2:33318333-33341945[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00067 0.055 14.1 0.8 1 19 261 279 261 283 0.89 2 12 0.0029 0.24 12.1 0.5 2 23 286 308 285 308 0.96 3 12 6.4e-07 5.3e-05 23.6 0.7 2 23 373 394 372 394 0.97 4 12 3.5e-05 0.0029 18.1 0.6 1 23 400 422 400 422 0.97 5 12 0.00016 0.013 16.0 2.6 1 23 428 450 428 450 0.99 6 12 7.1e-06 0.00059 20.3 2.9 1 23 456 478 456 478 0.98 7 12 0.0031 0.26 12.0 1.8 1 23 484 506 484 506 0.96 8 12 2.6e-06 0.00022 21.6 0.4 1 23 514 536 514 536 0.98 9 12 0.0015 0.12 13.0 0.2 1 23 542 564 542 564 0.96 10 12 1.2e-05 0.001 19.5 1.1 1 23 570 592 570 592 0.98 11 12 0.00014 0.011 16.2 0.2 1 23 598 620 598 620 0.98 12 12 0.0053 0.44 11.2 3.8 1 23 626 648 626 648 0.97
Sequence Information
- Coding Sequence
- ATGGCATCGTCTGTGGACCCGTTGGTGGAATTTGGCGAGTTGTGCCGACTTTGCGGTGCGAAAACGACCGTTTTGATGGGTCTCCACATTTTCGAGAGAGAAGGAAGCCTCCGGGAGATCTtcaagaaaatcaaggcctGCCTTCCCATTCAAGTGACAAATGACGACAAGCTGCCCAAAATGGTGTGTGAAGAGTGTGTCTACAAATTGGACGCTCTGTACGAGTTCAGAGAGAAAAGCGTGAAAACCGAGTACTTGCTCAACAGCATGATGAAAGGACTTTACGCCAGCACTCCTTCCAATCAGCACTACACTCCTCCTCCAAGTCTTCCTATCGAACCTCCTATGTGTACCCCGACCATGGCCGATGCTATTCAATTGGGGACACAGGTTGGTACCATGGTTGAAGTTCACCTAACAGATAACGCCGATCAATTAGACTCAATCATTATAACAGGAATGCCAATGACTGAGAGCGAGCACATCAAACACGAACCAGGCGTGGATGTATTGAAGAGGAATAATAAAAGCATCATAGAGGTGGTTCGCAACATAGAAGGAAACACTAACGATTCTCTGGTGTCTGTTACTGACGCCGATCACAGCGCTGACAACAATTGCACCATCACGGAACACATCGTCAACAATATTCAAGTTGCTGATATGAGGTCTCTTCAGGCTATCAGTAGTTCTAATCAGGAGATACCGAGCTTGAAGGCAACTACCGATGAGCAAGGGAACCGACACTTCATCATGGCTACCCATAGTGAGCAACCGTGGTTTTTTTGTGACATCTGTGGAAAACCTTTCGGAGACAGTAATGAGTTCCAAGCGCATTGTGAAATCCATTggaaaaaatgtcagctttgTGGGGTTACGTGCGCCAATGAAGAGGCGCTCATGCTTCATTTGAGGGAATCTCACAACACCTCGCTCCAGCAACTTCAAAGTGTTCCGCCTAAGGTGCCTGAGCAGCCGATGTCGTCACTACCGGACTCTGCTGGTGTACAGCAACAGCAATCGACGGGAATGTTGAGTGATTCTGATGAACCTAATACAACTCAAGTCAGCGACGATAAGTCGGCTAAAAAGGATGGTGCAAAAGATGGCTCGAAATCCTGTGGCGATTGTGGCAAGGTGTACAAAACAAATTATAAGCTTGCTGAGCACATGAGAAAGCACACAGGTGAAAAACCTTTCAAGTGCTCGATGTGCGAAAAAACTTTCAGGTCCAAAATCGGCCTCGCTCAACACGAAGCGAGACACACAGGGCATTATGACTACACCTGCAGTACTTGCGGGAAAGGATTTCAGTGCAAGTCTTACTTGATTGTCCATCAGAGGGTTCACAGTGACCTCAAACCCTACCCGTGTGACACATGTGGCCGTCATTTCAAAACCAAACAAAGTTTGCTGGACCATCAGAATCGTCATTTAGGCGTCAAACCGTACCTGTGCGAAACCTGCGGTCGTGGCTTCATCACCAAAGGCCTTTGCAAGTCGCACCAGAAAGTACATTCAGGCACAGACAACCGGCAGTTTCCTTGTTCCGTATGCAGCAAACTATTCGTGAGCAAATCCTATTTGGCAACTCACATGAGGATTCATACGGGAGAAAAGCCTTTCATGTGTGAAGTGTGCGGCAAAGGGTTTTTGACGCGAGTCGACCTGAAAATCCATTCTACTATGCACACAGGCGAGAAGAGTTTTGTGTGTGAAGTTTGCGGAAAGGCATTTGCTCGTCGGGATGCTCTTCGGTGCCATAGAAGAAGTCATACTGGTGAACGCCCATATAAATGTGATATTTGCGGACAAGGATTCACCCAGTTCTCTCCCATGGCCATACATAAACGGCTCCACACTGGGGAGAGGCCTTACGCTTGTGATATTTGCAGTAAGACCTTCGTTTCCCGCTCTACGATGATGTGTCACAGGAAGAAACATGCCGTTTCCTGA
- Protein Sequence
- MASSVDPLVEFGELCRLCGAKTTVLMGLHIFEREGSLREIFKKIKACLPIQVTNDDKLPKMVCEECVYKLDALYEFREKSVKTEYLLNSMMKGLYASTPSNQHYTPPPSLPIEPPMCTPTMADAIQLGTQVGTMVEVHLTDNADQLDSIIITGMPMTESEHIKHEPGVDVLKRNNKSIIEVVRNIEGNTNDSLVSVTDADHSADNNCTITEHIVNNIQVADMRSLQAISSSNQEIPSLKATTDEQGNRHFIMATHSEQPWFFCDICGKPFGDSNEFQAHCEIHWKKCQLCGVTCANEEALMLHLRESHNTSLQQLQSVPPKVPEQPMSSLPDSAGVQQQQSTGMLSDSDEPNTTQVSDDKSAKKDGAKDGSKSCGDCGKVYKTNYKLAEHMRKHTGEKPFKCSMCEKTFRSKIGLAQHEARHTGHYDYTCSTCGKGFQCKSYLIVHQRVHSDLKPYPCDTCGRHFKTKQSLLDHQNRHLGVKPYLCETCGRGFITKGLCKSHQKVHSGTDNRQFPCSVCSKLFVSKSYLATHMRIHTGEKPFMCEVCGKGFLTRVDLKIHSTMHTGEKSFVCEVCGKAFARRDALRCHRRSHTGERPYKCDICGQGFTQFSPMAIHKRLHTGERPYACDICSKTFVSRSTMMCHRKKHAVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01365787;
- 90% Identity
- -
- 80% Identity
- -