Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019177.2:30685914-30697954[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1 90 4.0 0.3 1 23 342 365 342 365 0.84

2 14 0.2 16 6.3 0.2 5 23 385 404 382 404 0.92

3 14 0.0034 0.28 11.8 1.0 2 23 410 432 410 432 0.95

4 14 4.2e-05 0.0035 17.8 0.3 2 23 435 456 434 456 0.96

5 14 2e-05 0.0016 18.9 1.4 1 23 462 484 462 484 0.95

6 14 1.5e-06 0.00012 22.4 2.1 2 23 491 513 490 513 0.95

7 14 0.00018 0.015 15.9 0.5 5 23 526 544 525 544 0.97

8 14 0.00066 0.055 14.1 1.7 2 23 550 572 549 572 0.97

9 14 0.0031 0.26 12.0 0.1 2 23 588 608 587 608 0.94

10 14 0.026 2.2 9.1 1.8 5 20 618 633 616 636 0.88

11 14 2e-06 0.00017 22.0 0.3 1 23 644 666 644 666 0.98

12 14 0.00023 0.019 15.5 5.7 1 23 672 694 672 694 0.97

13 14 9.4e-08 7.8e-06 26.2 2.8 1 23 700 722 700 722 0.98

14 14 0.0013 0.1 13.2 9.3 1 23 728 750 728 751 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1	90	4.0	0.3	1	23	342	365	342	365	0.84
2	14	0.2	16	6.3	0.2	5	23	385	404	382	404	0.92
3	14	0.0034	0.28	11.8	1.0	2	23	410	432	410	432	0.95
4	14	4.2e-05	0.0035	17.8	0.3	2	23	435	456	434	456	0.96
5	14	2e-05	0.0016	18.9	1.4	1	23	462	484	462	484	0.95
6	14	1.5e-06	0.00012	22.4	2.1	2	23	491	513	490	513	0.95
7	14	0.00018	0.015	15.9	0.5	5	23	526	544	525	544	0.97
8	14	0.00066	0.055	14.1	1.7	2	23	550	572	549	572	0.97
9	14	0.0031	0.26	12.0	0.1	2	23	588	608	587	608	0.94
10	14	0.026	2.2	9.1	1.8	5	20	618	633	616	636	0.88
11	14	2e-06	0.00017	22.0	0.3	1	23	644	666	644	666	0.98
12	14	0.00023	0.019	15.5	5.7	1	23	672	694	672	694	0.97
13	14	9.4e-08	7.8e-06	26.2	2.8	1	23	700	722	700	722	0.98
14	14	0.0013	0.1	13.2	9.3	1	23	728	750	728	751	0.96

Sequence Information

Coding Sequence: ATGTCCCTCAACAGTCATTTGGAGACTCACCCTAAAGATCAGGTGATCGAAGCGCTGGTGAGAGCTGTGTCCGACCGTGAGCGAGCTGGACTTCACCCACACTCTGCCATCATCAACCCCTTCCAAGTTGTTTCTGAGGAGCACATATTTTTCGGGCGTCAACAAGTGACAACCAATATCCTGGCACCCCTGATGACGTATCCCATATATCAACAGCAGCAGGTCCTGCATGGATCTCAACATCATGAACAATTCATTCAGCAGTCGCCACAGCATGCGCAGCTGCCGCAACACCCTCACCAAGATGATCACAGCGACACTAGAAGGCATCCGGAGTTGCCAGCTCAAGTTGCTGCCAATGCTACCTCTCCAGGTAACGAGGTTATAACAACACTGATAAACGTCCAACCTGGACAGCAAGAGTTCAGGCAGGCAAACGCTGAGACTGTACCTCTGCCTATAGATGAAGTGGAGGAGAAATGCGATtacgaggagaaggtagaggaCGCCGATGCTCCTATGGTGATTCACGTGTCTGACGATGAAGAAGGTCATACGAAAGAAACTGTCGACGACACCCATCAATATGCGGAGGCTACACCAACCAGCGTGATCCATACGCCCATTGACCACGTCAATAACTCTCACTCTGTCATCGCCCTCACAAATGTCGAGCGAGACTCGAGTCAAGACCAATTCATCACATCCGATTTCCAGGATGAAGATGCCAGACATAGTGAAGACTTCATCGATGATTCTACTCCCGCTTCAGACTATGAAGAGGACGACGATGACGATGCTCACTTGATTGAACACCAGCGTCGCTTGTATCTCGAAGAGCAAGAAGACGATGTTGAAGCCCGCAGTGATTCTGGGCTCCAAAACATCCAAGCAGACGAATGTATGCCTGCCAGAGGAGAGCTCTCTGGGCACGGTAGCGTCAACACTGTACACTCCTGGGATCATGATGAAATCGGAATGCCAGCTCCTATTTGGGAAGGAAAGACTGAATCTTTGAAGCGATATCCTTGTCTTTATTGTGATGAGGATTTCCCTTGTCCTAAGGAAAGGCGTGTACATGTGGCATCCATTCATTGTGCTTCTGACACCAAATCTGAAATACTCAAGAGTCAACGGGCCATTATGTGCATCAAATGCGGTCTACAGCTGGAATCCTTGAAGGACCTCAGGGTCCACATTAAGATGGAGCACAAGAAAGTGACGAGGCAGTGCTGCGTTTGTCAGGAAGAGTTCAAGTCTCAGGAGGAATACACGGAGCATATAGTCAAAGTGCATCCTCTCGAATGTAGAACTTGCGGGAAAACCTTCAAGAGCAAGGCGAGCCTGGTCGGACATGCCAAGATTCATCTGATTGTCAAACCCCATGCTTGTACTCTCTGCCCCAAGACTTTCATCACCAACCAGAAACTGAAGGAACATATGAACGGGCATACTGGGTATGCCCCCATCCAGTGCAATATGTGTGACAAAAAATTTAAGAGGTATTCGAACTTGAAGCAGCATAAGGACACTATTCATTTTCAACTGAAGAAGCAAGTGAAAGAATTTTTCTGTGAGTGTGGTGAAACGTTCTCTTCTAAGAAGAAATTGGAGTGGCACCAGGAAACCCATGATGACAAGCCGAAGCAGTGTATGTATTGTAGCGAGCGGTACATCCATATGGCCAGTCTCACCCGACACATCCGGAAAGCTCATAACAATGAATACCTGCCTACTACTGGAGTCAAGAAGAAGAACGTTGTTTGTCCTATTTGTAACTTGACGTTTGTGGATACTTCGCTTAGGGCTCATATGAAACAACACGGGACTGTGAAACAGTTCGGGTGTATCGTTTGCGGCAAGAAGTTCTACACCAAGTGGAATCTTCACCTCCATCGATGGACCCACGCCTCGCGGATGTCTAAACCATACAAATGCACTCTTTGTAAAAGCGCATTCGTGCGTCAAAGCGATCTCCAAGCTCATATAAGAGCACATTTCAACAGCAAGCCTTTCACTTGCAACCATTGCGGCATGCAGTTCAATAGGAAACACAACTGGAGCCGTCACGAGAAAGAGCATTTGAACGAGAAGAAGTTCGTTTGCAACGAGTGTGGTAAAACCTTCCACCGGCAATATTATCTAGTCGAGCATATGAGAACGCATACGGGAGCAAAGCCGTTTTCCTGTCACATTTGCAACAAAACCTCGTCCACTAAGTCCAACCACAATAAACACATAAAGACTCACCACGCTCGTGAAGCCGTCAATACGGAGTCTTAA
Protein Sequence: MSLNSHLETHPKDQVIEALVRAVSDRERAGLHPHSAIINPFQVVSEEHIFFGRQQVTTNILAPLMTYPIYQQQQVLHGSQHHEQFIQQSPQHAQLPQHPHQDDHSDTRRHPELPAQVAANATSPGNEVITTLINVQPGQQEFRQANAETVPLPIDEVEEKCDYEEKVEDADAPMVIHVSDDEEGHTKETVDDTHQYAEATPTSVIHTPIDHVNNSHSVIALTNVERDSSQDQFITSDFQDEDARHSEDFIDDSTPASDYEEDDDDDAHLIEHQRRLYLEEQEDDVEARSDSGLQNIQADECMPARGELSGHGSVNTVHSWDHDEIGMPAPIWEGKTESLKRYPCLYCDEDFPCPKERRVHVASIHCASDTKSEILKSQRAIMCIKCGLQLESLKDLRVHIKMEHKKVTRQCCVCQEEFKSQEEYTEHIVKVHPLECRTCGKTFKSKASLVGHAKIHLIVKPHACTLCPKTFITNQKLKEHMNGHTGYAPIQCNMCDKKFKRYSNLKQHKDTIHFQLKKQVKEFFCECGETFSSKKKLEWHQETHDDKPKQCMYCSERYIHMASLTRHIRKAHNNEYLPTTGVKKKNVVCPICNLTFVDTSLRAHMKQHGTVKQFGCIVCGKKFYTKWNLHLHRWTHASRMSKPYKCTLCKSAFVRQSDLQAHIRAHFNSKPFTCNHCGMQFNRKHNWSRHEKEHLNEKKFVCNECGKTFHRQYYLVEHMRTHTGAKPFSCHICNKTSSTKSNHNKHIKTHHAREAVNTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00930618;
90% Identity: iTF_00930618;
80% Identity: -