Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019182.2:4408443-4410442[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3e-08 1.1e-06 28.9 1.6 1 23 96 118 96 118 0.97

2 15 0.0015 0.12 13.0 0.5 1 23 124 146 124 146 0.97

3 15 0.1 8.4 7.2 0.2 1 23 152 174 152 174 0.96

4 15 0.0085 0.7 10.6 2.7 1 23 180 202 180 202 0.97

5 15 0.019 1.5 9.5 1.1 1 23 208 230 208 230 0.96

6 15 0.0024 0.2 12.3 1.6 1 23 236 258 236 258 0.97

7 15 0.0032 0.27 11.9 2.9 1 23 264 286 264 286 0.98

8 15 8.1e-05 0.0067 17.0 2.5 1 23 292 314 292 314 0.98

9 15 0.0034 0.28 11.9 1.7 1 23 323 345 323 345 0.98

10 15 2e-05 0.0017 18.9 0.4 1 23 351 373 351 373 0.97

11 15 7.9e-05 0.0066 17.0 3.5 1 23 379 401 379 401 0.98

12 15 0.034 2.8 8.7 0.9 1 23 407 429 407 429 0.96

13 15 1.2e-05 0.00098 19.6 0.6 1 23 436 458 436 458 0.98

14 15 0.00089 0.073 13.7 0.9 1 23 464 486 464 486 0.98

15 15 0.008 0.66 10.7 0.8 1 23 492 515 492 515 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3e-08	1.1e-06	28.9	1.6	1	23	96	118	96	118	0.97
2	15	0.0015	0.12	13.0	0.5	1	23	124	146	124	146	0.97
3	15	0.1	8.4	7.2	0.2	1	23	152	174	152	174	0.96
4	15	0.0085	0.7	10.6	2.7	1	23	180	202	180	202	0.97
5	15	0.019	1.5	9.5	1.1	1	23	208	230	208	230	0.96
6	15	0.0024	0.2	12.3	1.6	1	23	236	258	236	258	0.97
7	15	0.0032	0.27	11.9	2.9	1	23	264	286	264	286	0.98
8	15	8.1e-05	0.0067	17.0	2.5	1	23	292	314	292	314	0.98
9	15	0.0034	0.28	11.9	1.7	1	23	323	345	323	345	0.98
10	15	2e-05	0.0017	18.9	0.4	1	23	351	373	351	373	0.97
11	15	7.9e-05	0.0066	17.0	3.5	1	23	379	401	379	401	0.98
12	15	0.034	2.8	8.7	0.9	1	23	407	429	407	429	0.96
13	15	1.2e-05	0.00098	19.6	0.6	1	23	436	458	436	458	0.98
14	15	0.00089	0.073	13.7	0.9	1	23	464	486	464	486	0.98
15	15	0.008	0.66	10.7	0.8	1	23	492	515	492	515	0.95

Sequence Information

Coding Sequence: ATGGCGGACGAAACAGGGCCTGAGGGAGACGGGAGAGTTTCGGCGATCGAAGTCACACGAGAAGATCCGGAGATCAAGAAAGAGGCGGTTGTCGATCAAGGTGCGATCAAGATTGAAGATGACATCAAAGAAGAGGTGATCTTAGAAGACGGCGAAATCAAGCGGGAAATCAAAGAAGTCCGCCTCAACAATCTTCAAAATTCAACTcctgaaatcttcaaaattttgacaggACGAGAAGGTGAGAGTAAATTAGGGACGGAAACTCGTAAGACTGAGAAGCGGCATCCCTGTGAGGTTTGTGGCTACAGATTTCGGCAGCAGGCGGATCTGAAGaggcacatgaggactcacacagGCGAGAAGCCGTACGCCTGTGACAGTTGTGACTACAGAGCGTCGCAGAAGAGGCAGCTCATGGATCACAGAATAACGCACACGGGGGAAAAGCCGTTCGCTTGTGACAGCTGTGACTACAGAGCCGCTCAGATGAGGCAACTGAACGACCATAAATTGATTCACGCGGAGTCTCGTCCGTTCGCGTGTGATATTTGCGACTTCAAAACGACGCATGTGCGGTATTTGAAGGCTCACAAGAAGAATCACAACGGACCGAAGCCTCACGCGTGCGACGTGTGCGATTACAGGACGGGTCTGCTGCGATCTTTGACGATTCACAAAAGGACGCATACGGGAGAGAAGCCGTTCGCGTGTGACAAGTGCGATCACAGGTCGGCGGCTCGGAGCGATCTGATGAAACACAAGATGACGCACGCGCGAGAGAAGCCGCACAAGTGCGATCGGTGCGATCACAGAGCTGGAACTCGAGCTGATCTGAAGAAGCACCAGATGGTGCACACAGGCGAGAAGCCGTACAACTGTTATATTTGCGCGTACAGGACTAGGAGTCGGAGTAATTTGAAGAAACACGTGAAGACTCACGTTCAGACGGAGAAAAAGTACATTTACACGTGTAGTAGTTGTGACTACAAGGCGTCACAGGGGCGGTATTTGAGGAATCACATGAAGAATCACTTGGATCAGAAGCCATTCGCGTGCGATCGTTGCGATTACAGGGCGGTGCGGAAGGCGACGCTGAAAGCTCACATGCGAACTCACACAGGTGAGAAGCCGTACTCTTGCGACCAGTGCGATTACGGCTGCACGCAGCGAAGATACCTCAAAGTCCACATGACGACTCACACAGACGAGACATCATTCGCCTGCGACGCCTGTGACTTTAAATGCGCCACGCGAGTGGGTCTGAGAACTCACACAGTCACTCACATCACCGACAAGCCGCATTTCTCCTGCCTAACCTGCGGCTACGTCACCGCCCTTCAAAGCGATCTGAATAAACACCAAAGGACTCACACAGCGAAGAAGCCATACGCCTGTGACCGCTGCGACTACAGATCAGGGCGCATGACGTCACTCAGAAACCACATCCGGAGGCACACAGGCGAGAAGCCTTTCGCCTGTGATCGCTGCGACTACAAAGCCACACAGAAGCGGTACCTGAAGGATCACGTGACGAAGGCTCACTCAGAATATTCACCAAAACATACTTCCATGGACGACGCCAAAAATGTGTAA
Protein Sequence: MADETGPEGDGRVSAIEVTREDPEIKKEAVVDQGAIKIEDDIKEEVILEDGEIKREIKEVRLNNLQNSTPEIFKILTGREGESKLGTETRKTEKRHPCEVCGYRFRQQADLKRHMRTHTGEKPYACDSCDYRASQKRQLMDHRITHTGEKPFACDSCDYRAAQMRQLNDHKLIHAESRPFACDICDFKTTHVRYLKAHKKNHNGPKPHACDVCDYRTGLLRSLTIHKRTHTGEKPFACDKCDHRSAARSDLMKHKMTHAREKPHKCDRCDHRAGTRADLKKHQMVHTGEKPYNCYICAYRTRSRSNLKKHVKTHVQTEKKYIYTCSSCDYKASQGRYLRNHMKNHLDQKPFACDRCDYRAVRKATLKAHMRTHTGEKPYSCDQCDYGCTQRRYLKVHMTTHTDETSFACDACDFKCATRVGLRTHTVTHITDKPHFSCLTCGYVTALQSDLNKHQRTHTAKKPYACDRCDYRSGRMTSLRNHIRRHTGEKPFACDRCDYKATQKRYLKDHVTKAHSEYSPKHTSMDDAKNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -