Aluc014794.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apolygus lucorum
Gene Symbol
-
Assembly
GCA_009739505.2
Location
CM019175.2:578081-748043[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.13 11 6.8 0.3 2 23 170 191 169 191 0.95
2 19 7.2e-05 0.006 17.1 0.8 2 23 198 219 197 219 0.97
3 19 1.1e-06 9.2e-05 22.8 0.5 2 23 254 275 253 275 0.97
4 19 0.00014 0.012 16.2 4.7 1 23 281 303 281 303 0.98
5 19 0.026 2.1 9.1 2.2 1 23 309 332 309 332 0.97
6 19 0.0081 0.67 10.7 1.4 1 23 339 362 339 362 0.96
7 19 0.00074 0.062 13.9 0.9 1 23 368 390 368 390 0.98
8 19 0.042 3.5 8.4 5.4 1 23 396 418 396 418 0.97
9 19 0.00041 0.034 14.7 3.1 1 23 424 446 424 446 0.98
10 19 0.0015 0.13 12.9 3.8 1 23 460 482 460 482 0.99
11 19 0.00097 0.08 13.6 0.5 1 23 488 510 488 510 0.99
12 19 0.0026 0.22 12.2 3.1 2 23 517 538 516 538 0.97
13 19 0.00045 0.037 14.6 2.9 1 23 544 566 544 566 0.97
14 19 0.00027 0.023 15.3 1.4 1 23 572 594 572 594 0.99
15 19 0.0053 0.44 11.2 5.0 1 23 600 622 600 622 0.97
16 19 0.0005 0.041 14.5 1.8 1 23 628 650 628 650 0.96
17 19 0.00077 0.064 13.9 0.4 1 23 656 678 656 678 0.98
18 19 0.0039 0.32 11.7 3.9 1 23 684 706 684 706 0.99
19 19 0.072 5.9 7.7 1.5 1 23 723 745 723 745 0.97

Sequence Information

Coding Sequence
ATGGGTCGAATCAGAAGCCATTTTGGAGTGAAATCGGAAAGCTACTCCTTGTCCAAAGGAAAGATGGAAGCCGAAGAAGTGATCATCAAAATGGAAGAAGACGATCAAAtgatcgaaaatttcatcgaaggcTTTGATGAGTATGGTGAAGGTATTGAAATTATGACTGAAGAAGTTCAAAGTTACAAAGAGCAAGTCTACGATGAAGGTGCAGACGATGGAAATGGAGAATTGGAAGAAGATCAGTACGAGGGAGATGAAAATCAGGAATCTGACGATAATGGAGTGGCGATTAGTTATAATGAAGAAAGTTCGAGCGGAGCTGAGAGGGATTCCGATTCCGACGTTGAAGACGTCGTTTACCTTTACGAAGACGGACACGCTTTGTCGGAACAGGAAGTCACGACGAGCTCTCCTTCGAAGAAAATGACGGCGTCTCGGAGGAAAGCCAAGCCTACCGATATTTTCCCCTCTGTGAAAGTGGAAACTAAACGCGGCGTCAATCTCTCGTGCACGGAATGTGAATTCGTTGGCAAAACTAAGCAAATTCTCGAGCGTCACATGGTGAAACACAGCGGTGTGAAGCATTTGGAATGCGATAAATGCGATTATCGGACGGGATATGCGAGCTCGCTGAAACGCCACCAACAAACACACACCAGAGCTCAAACGGAAGCGAGTCGCACGAGTCAATCCAAAAACACGACAACCAGATACACCAAAACCTACCAATACTCCGAGCACGGGCCGTACACGTGGGTTTGTGAATTCTGCGATCACGTCTTCACCAATCGAGGGAACCTTCAGGCGCACTTGAGAGTCCACACGGGGGAACGACCGTATTCGTGCGGCCTCTGCGAGTACACCTGCAACCAGTCTCAACATCTCAAAAGACACATGGCCACCCACACTGgtGAAAAACCCTACGCGTGCGCTTTCTGCGACTACAGATCCGTTGATCGCCGTCACATCACCAGACATTTTCGCACTATTCACGGAGatgaCACGAAATTCTTTTCGTGCAGCCTCTGCGAGTATAAAACCACCAACAGGAACGAACTCGTCTCCCATAAGAGAGAAAACCACCAGGGTGACACGGTGTTTCCTTGTTCCATCTGCGATTACAAAGCTACCACCAGAGATCGCTACACGAAGCACATGGCCCGTCACGCTGGCGTAAAACCTTTCCACTGTGACAAGTGCAGCTACAAAGCCTGCACCAATTCAGAACTCAGGAATCACAAATTAGTCCACGATGATTTCAAACAGTTTGTGTGCAACATTTGCGGTCACCGGTCCCGTTTGAAGAAACACCTCGCGCTCCACATGAAAGTTCATCTCCCGAAGGACGAACGACCTGAAATTATCGAGAAGAAATACAAATGTGAATTGTGCGACTACCGAGGCACGACGATGCAGTGTTTGCGGTCGCATATGAAAACACATTCAGATGAAAAACCTTACGAGTGCGACCTGTGCGCCTACAAGACGCGTTTCCCATCAGCTCTCACCGCTCACAAAAGGAAGCATTTCGGACTGAAGCCCCTCCAGTGCGGCCACTGCGATTACAGGTGCGCCACCAAAGTCGAAATGGGTTCCCACATGAGGAGACACACAGGAGAGAAACCCTATGCTTGCGATATGTGCGACCACAGAGCGCGCCACAGTTCGTCGTTGGTGAAACACATGAAGCTCCACACAGGAGACAAACCTTACGTCTGCGACAAATGCCCGTACAAAGCCGCCCACAGGCAGTCCCTAATGAAACATCAACGAGTCCATACAGGAGAAAAGCCGTTCGCGTGTCACTTCTGCGATTTCAAAACGTCGCATCGGAGTTATTTGGCGTACCACATCAAAATCCACACTGGGGAGAAACCGCACGCTTGCAACATCTGCGACTACCGCGCGGCTCAGCGTCAGCATCTCCTCCGCCACATGATCTCCCATTCCAaTGATAAACAGTACGCTTGCAACAAATGTGATTTCCGCAGCGGCTACGCGACCGCTCTCACACGTCACCTGCGTGTTCATTCAGGAGAAAAACCGTACAAGTGCGAATTTTGCGATTTCTGCTCCGCCCACCCCACCGGGCTGTCGAAACACCTGTCCACCCACAAAGGCTACATCAAAAAGAAGCCGATTTGCATCAAGTCGTCGACGCCGTTCATCTGCGAGTTCTGCAACTACATCAGCTACTACAAGTTGACCTTCGAGAAGCACATGGAGAGCCACGGCCTCGAGGACTACTTCGTCGAGCCGGAAGGCGTTTTGGAGATGGAAGAGATCGTTGAGGAGAGCGTCCTGGAGGAGGAGGACCCGACTTTCCTACCCCACGAAGAGACGGAGGTTCGGGTCAAAGTGGAGCCATCGCTCAAATTCGAGTACCCGCGGGAGGTTGATCCGGTAGAGTGCGGGACGGTCGCCTACGAAGTGGAAGTTGGCGAAGACGAAGAGTTCGAAACGGAGTTTGAAGTCGCCGAAGAAGTCGAAATCGGAGAAGTCGTTGAAGTGAAAGAAACAGGGTTCGCTGGAGGCGACGTCTACAGAGATGCGGCTGTCATCACCGTCGCCAACAACCTTCTGAGTCTAGCGGGGATGACGGAAGCTgaattggaagaagaagaactcAACTAG
Protein Sequence
MGRIRSHFGVKSESYSLSKGKMEAEEVIIKMEEDDQMIENFIEGFDEYGEGIEIMTEEVQSYKEQVYDEGADDGNGELEEDQYEGDENQESDDNGVAISYNEESSSGAERDSDSDVEDVVYLYEDGHALSEQEVTTSSPSKKMTASRRKAKPTDIFPSVKVETKRGVNLSCTECEFVGKTKQILERHMVKHSGVKHLECDKCDYRTGYASSLKRHQQTHTRAQTEASRTSQSKNTTTRYTKTYQYSEHGPYTWVCEFCDHVFTNRGNLQAHLRVHTGERPYSCGLCEYTCNQSQHLKRHMATHTGEKPYACAFCDYRSVDRRHITRHFRTIHGDDTKFFSCSLCEYKTTNRNELVSHKRENHQGDTVFPCSICDYKATTRDRYTKHMARHAGVKPFHCDKCSYKACTNSELRNHKLVHDDFKQFVCNICGHRSRLKKHLALHMKVHLPKDERPEIIEKKYKCELCDYRGTTMQCLRSHMKTHSDEKPYECDLCAYKTRFPSALTAHKRKHFGLKPLQCGHCDYRCATKVEMGSHMRRHTGEKPYACDMCDHRARHSSSLVKHMKLHTGDKPYVCDKCPYKAAHRQSLMKHQRVHTGEKPFACHFCDFKTSHRSYLAYHIKIHTGEKPHACNICDYRAAQRQHLLRHMISHSNDKQYACNKCDFRSGYATALTRHLRVHSGEKPYKCEFCDFCSAHPTGLSKHLSTHKGYIKKKPICIKSSTPFICEFCNYISYYKLTFEKHMESHGLEDYFVEPEGVLEMEEIVEESVLEEEDPTFLPHEETEVRVKVEPSLKFEYPREVDPVECGTVAYEVEVGEDEEFETEFEVAEEVEIGEVVEVKETGFAGGDVYRDAAVITVANNLLSLAGMTEAELEEEELN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-