Basic Information

Insect: Apolygus lucorum
Gene Symbol: -
Assembly: GCA_009739505.2
Location: CM019179.2:63960531-63988718[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.6e-06 0.0003 21.2 0.4 2 23 335 356 334 356 0.97

2 13 0.00021 0.018 15.6 2.7 2 23 363 384 362 384 0.96

3 13 0.054 4.5 8.1 3.0 3 23 392 412 391 413 0.95

4 13 0.00017 0.014 15.9 8.4 1 23 418 441 418 441 0.97

5 13 5.5e-06 0.00046 20.6 2.0 1 23 448 470 448 470 0.96

6 13 0.00062 0.051 14.2 1.3 1 23 525 547 525 547 0.99

7 13 0.0095 0.79 10.4 3.2 3 23 555 576 554 576 0.96

8 13 0.00017 0.014 15.9 1.9 3 23 585 605 584 605 0.97

9 13 3.4e-05 0.0028 18.1 1.4 1 23 614 636 614 637 0.96

10 13 1e-05 0.00085 19.8 0.3 1 23 642 664 642 664 0.99

11 13 1.3e-05 0.0011 19.4 0.2 1 23 670 692 670 692 0.98

12 13 7.7e-08 6.4e-06 26.4 3.5 1 23 698 720 698 720 0.98

13 13 5.8e-07 4.8e-05 23.7 0.8 1 23 726 748 726 748 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.6e-06	0.0003	21.2	0.4	2	23	335	356	334	356	0.97
2	13	0.00021	0.018	15.6	2.7	2	23	363	384	362	384	0.96
3	13	0.054	4.5	8.1	3.0	3	23	392	412	391	413	0.95
4	13	0.00017	0.014	15.9	8.4	1	23	418	441	418	441	0.97
5	13	5.5e-06	0.00046	20.6	2.0	1	23	448	470	448	470	0.96
6	13	0.00062	0.051	14.2	1.3	1	23	525	547	525	547	0.99
7	13	0.0095	0.79	10.4	3.2	3	23	555	576	554	576	0.96
8	13	0.00017	0.014	15.9	1.9	3	23	585	605	584	605	0.97
9	13	3.4e-05	0.0028	18.1	1.4	1	23	614	636	614	637	0.96
10	13	1e-05	0.00085	19.8	0.3	1	23	642	664	642	664	0.99
11	13	1.3e-05	0.0011	19.4	0.2	1	23	670	692	670	692	0.98
12	13	7.7e-08	6.4e-06	26.4	3.5	1	23	698	720	698	720	0.98
13	13	5.8e-07	4.8e-05	23.7	0.8	1	23	726	748	726	748	0.98

Sequence Information

Coding Sequence: ATGCCTGTCGTGAAAGATTTGGAGAGGGAGACTATTGAGTCTCCTCTGCTGGGTCTGCTGTACGCTGGTAGGTCGGAGTTCAATTGGGTTGTGGAAATCCGTACagacgaagaagacgaagagCGCTGGTCAATTGGGAATTTAGTGACATATTCCCATGTGTTGACTACTTGCAGAGCCGTAAGAAAGGATGAACAAGTTTCTGGTACTCCCAGTCGGATTATCATGATACACTTCAGAGTTGTTATCTACATTGGTTATTCTCATCTCTATCTTCTGCCAAGCAGTAAATCTAAACTCTACCGAAACCATCAGCAAAGAGACGCGTTAACTACTGGACGTTCAACTTGTGATGAGGTTTCTAATAAGAGGAATCGAGACAAACTCACTTGTGTCTCACCAAGAAAAAGAGTTGGTGCTATTTGCGATCATCACCGCGGAGCTCCACTCGTCTGCGATGGGTTTGTTATTGGTTTCGTCGTACGTGGTGTCAGTTGGGAGAATTGCAACAGTCTGCTGCAATATCCCGTGGTGGTTCTTCGAACTACGGATTTCGCCAACGAATTGTACGAGCAAATTGCAGGTCGGAGATTGACTTTGAAAGAAGGTTTCTCAGACAGCGAAGGAGAAAGTAACGGGCTGGCGTTTCTGCGTGGAGCGAAACATCAGCTGATAGACAGGCATTCGGCCTACAATTCGGTTTCCCGCGAAAATAACGCGCTTCCCGCGACGAGTGGAGAAAATATACCGAGAAGCAATTTTAAGGTTGCGGACGCTATTTCTTCCGTGGCTTTTGAGGCTGAACCACACCAAGATCGAAATAATCTTCCGTCTTCAATAAATACCAATAATTCCAACCCACCTATACATCAATTGCCCAAAAAAATTACCCTTACGAAATGGAGGAAAGCTCGGATTGTGAATTACAAAACAGTTCTAATGGGGATTTCAAGTCGCTATCTATCCAAACACCAGTCCCGTCACTCCGCATATCCAAAGGTTCCCTGCAAGCTGTGCGGTCGAATGTTCGTCAACAATACCGAACTGAAAGAACACCAAAAGTCTCATAACGTTGGCGAAAAAATACACTGTACGTCTTGTGATTACGTGACGATGTACAAATCCAACTTGACCAGGCACATGATGAGGCACGAAAAGCGCTACGTCGTGTTTTGCGAGGTCTGCAAAGATGGGTTTTACGATAAAGACGAACTGACGACTCATCATATTAAACATCACGGAGCTCAGCCGTTCTTTTGCGAAACGTGTCACAAGACGTTCACGAGCAAGAGTAACCTCAACTGTCACATGAAAACCACTCATTGGACGTCCAGTAAAGACTTCCTTTGTGAAACTTGCGGGAAAGCCTTTAAAACGAGGAATGCAACTAAGAGGCACATGAAGACCCACATGGGATTTGAAAATCCAGACGCCAAGACGACCGTTTGCGTCGATTGTGGAGTCCACAAAACTGACACCAATTTCGAACTAGCGCGATCCAATCAGACTCGTTGTGACATTTGCAACCAGGTAGAACTCCCTAAAAATACCGAGTGCAGTGAGAAGAGACAGTACGAGTGCAGTATTTgtgattacaaaaataattctctGAGCAATTTCAAAATCCACATGATGAAACACAACGGTGAGCATTTGGCCAACTGTGGACATTGCGGTAAAGGGTTTTACAGCAAGAGCGCTTGTGAAGAACACCAAATAACCAAACACGGTAACCGAATTTCGATGAACCATTGCGCTGAATGCAACGCGAATTTCAATAGCAAAGCTTATTTGCGTTTGCACATGAAAACCCACGCCTCCGATTACCAAAGGGACAATTTTCAATGCGAACTTTGCGGCAAAACTTACATATCTTGGAAGGGGATTAGAAGGCACAAGATGATCCACCATCAAGGGCAGGTTTATCAATGCGAAATTTGCGACAAGGAGGTTAAAAGTTTGGAGTCACTcaacaatcacagaaaaattCACGTGGGAGAGAAATCGTTCGTTTGCGCGACTTGCGGCAAATTTTTTAGAACTAGCAACGGATTGGCGGTTCACGAGAGGATTCACAGCGGTTTGAAACCGTTCAAGTGTCATATTTGCGACAAAATGTTTTCTCAGAGCTCGAGTTTGAAAGTGCACGTGAGGTACCACAACGGGGAGCGGCCTTATAGTTGCTCGAAATGTGGTAAAGCGTATGTTACTGCGacacttttgaaaaatcatcaaagatCTCATAGCAATGTGGATGAATAG
Protein Sequence: MPVVKDLERETIESPLLGLLYAGRSEFNWVVEIRTDEEDEERWSIGNLVTYSHVLTTCRAVRKDEQVSGTPSRIIMIHFRVVIYIGYSHLYLLPSSKSKLYRNHQQRDALTTGRSTCDEVSNKRNRDKLTCVSPRKRVGAICDHHRGAPLVCDGFVIGFVVRGVSWENCNSLLQYPVVVLRTTDFANELYEQIAGRRLTLKEGFSDSEGESNGLAFLRGAKHQLIDRHSAYNSVSRENNALPATSGENIPRSNFKVADAISSVAFEAEPHQDRNNLPSSINTNNSNPPIHQLPKKITLTKWRKARIVNYKTVLMGISSRYLSKHQSRHSAYPKVPCKLCGRMFVNNTELKEHQKSHNVGEKIHCTSCDYVTMYKSNLTRHMMRHEKRYVVFCEVCKDGFYDKDELTTHHIKHHGAQPFFCETCHKTFTSKSNLNCHMKTTHWTSSKDFLCETCGKAFKTRNATKRHMKTHMGFENPDAKTTVCVDCGVHKTDTNFELARSNQTRCDICNQVELPKNTECSEKRQYECSICDYKNNSLSNFKIHMMKHNGEHLANCGHCGKGFYSKSACEEHQITKHGNRISMNHCAECNANFNSKAYLRLHMKTHASDYQRDNFQCELCGKTYISWKGIRRHKMIHHQGQVYQCEICDKEVKSLESLNNHRKIHVGEKSFVCATCGKFFRTSNGLAVHERIHSGLKPFKCHICDKMFSQSSSLKVHVRYHNGERPYSCSKCGKAYVTATLLKNHQRSHSNVDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -