Aluc014940.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019175.2:13486189-13505900[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.054 4.5 8.1 0.0 6 23 86 103 85 103 0.96 2 13 9e-05 0.0074 16.8 0.6 1 23 109 131 109 131 0.98 3 13 9e-05 0.0074 16.8 0.6 1 23 137 159 137 159 0.98 4 13 0.0024 0.2 12.3 0.9 1 23 165 187 165 187 0.98 5 13 2.7e-05 0.0022 18.5 0.1 1 23 193 215 193 215 0.98 6 13 0.0084 0.7 10.6 0.3 1 23 221 243 221 243 0.98 7 13 2.6e-05 0.0021 18.5 1.7 1 23 249 271 249 271 0.98 8 13 0.00012 0.01 16.4 2.5 1 23 277 299 277 299 0.98 9 13 0.0011 0.087 13.4 0.3 1 23 305 327 305 327 0.98 10 13 1.9e-05 0.0016 18.9 0.1 1 23 333 355 333 355 0.98 11 13 0.00011 0.0087 16.6 0.6 1 23 361 383 361 383 0.98 12 13 0.00017 0.014 15.9 0.4 1 23 389 411 389 411 0.98 13 13 1.1e-05 0.00093 19.7 0.4 1 23 417 439 417 439 0.99
Sequence Information
- Coding Sequence
- atggaagaagaaattgtggTGAGAGAAGAAGCGACTGAAGATGaggtgaaggaagaagtggagatcaaacaggaggtggCGATGGGAGATGAAGATGTGGAAGAAGAGGTAGGGAACAGATGGGCAGTTGAAGATGAAGTTGAGGGGGATCTGATGATCAAACGAGAGGACGGTTTAACTGATCCGCTTGGTGAGGAAAGTGACGTTctggagggatcttctggagtacagaggtgtgagttgaagactttcccatgtgattacagagcctcgcagatagggTCTCTGAAgtctcacatgatgactcacactggggaaaagccctacgcctgtgatagatgtgattacagagcctcgcagataggacatttgaaagctcacatgatgactcacactggggaaaagccttacgcctgtgatagatgtgattacagagcctcgcagataggacatttgaaagctcacatgatgactcacactggggaaaagccttacgcctgtgatagatgtgattacagagcctcaaagCTGgaatctctgaagactcacaagatgactcacactggggaaaagccctacgcctgtgatatatgtgattacagagcctcgcagataggaaatttgaaagatcacatgatgactcacactggggaaaagccctatgcctgtgatagatgtgattacagagcctctcaggtaGGAAATTTGAGAtttcacatgatgactcacactggggaaaagccctacagctgtgataaatgtgaatacagagcctcgcatccagggtctctgaagacccacatgaggagtcacactggggagaagccctacgcctgtgatagatgtgattacagagcctcgcatcaacgatctctgaagaggcacttgatgactcacactggagagaagccctatgcctgtggtagatgtgattacagagcctcggagataggacatttgaaagctcacatgatgactcacactggggaaaagccctacgcctgtgataaatgtgattacagagcctcgcagataggaaatttgagagctcacatgatgactcacgctgaggaaaagccctacgcctgtgatagatgtgattacagagcctcgcaaaTAGGATAtctgaagaagcacatgaggagtcacactggaggaAAGCCgtatgcctgtgatagatgtgattacagagcctcgcagataggatctctgaagactcacatgaggagtcacactggaggaaagccctacacctgtgatagatgtgattacagagcctcgcagatgggaaatttgaaagctcacataaggactcacactggaaAGAAGACATAA
- Protein Sequence
- MEEEIVVREEATEDEVKEEVEIKQEVAMGDEDVEEEVGNRWAVEDEVEGDLMIKREDGLTDPLGEESDVLEGSSGVQRCELKTFPCDYRASQIGSLKSHMMTHTGEKPYACDRCDYRASQIGHLKAHMMTHTGEKPYACDRCDYRASQIGHLKAHMMTHTGEKPYACDRCDYRASKLESLKTHKMTHTGEKPYACDICDYRASQIGNLKDHMMTHTGEKPYACDRCDYRASQVGNLRFHMMTHTGEKPYSCDKCEYRASHPGSLKTHMRSHTGEKPYACDRCDYRASHQRSLKRHLMTHTGEKPYACGRCDYRASEIGHLKAHMMTHTGEKPYACDKCDYRASQIGNLRAHMMTHAEEKPYACDRCDYRASQIGYLKKHMRSHTGGKPYACDRCDYRASQIGSLKTHMRSHTGGKPYTCDRCDYRASQMGNLKAHIRTHTGKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -