Basic Information

Insect: Apolygus lucorum
Gene Symbol: su(Hw)
Assembly: GCA_009739505.2
Location: CM019172.2:26692007-26732731[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0031 0.25 12.0 0.6 2 20 110 128 110 130 0.93

2 13 9.1e-06 0.00075 19.9 0.6 1 23 251 274 251 274 0.98

3 13 8.8e-05 0.0073 16.8 1.9 1 23 279 301 279 301 0.98

4 13 2.6e-05 0.0021 18.5 1.1 1 19 307 325 307 328 0.95

5 13 2.3e-07 1.9e-05 24.9 0.3 1 23 339 361 339 361 0.97

6 13 0.0017 0.14 12.8 4.1 1 23 371 393 371 393 0.99

7 13 0.00013 0.011 16.3 1.3 3 23 401 421 399 421 0.98

8 13 1.4e-05 0.0011 19.4 3.5 1 23 427 449 427 449 0.98

9 13 1.7e-05 0.0014 19.1 3.1 1 23 455 477 455 477 0.94

10 13 7.4e-05 0.0062 17.1 1.2 1 23 500 523 500 523 0.95

11 13 1.1e-07 9e-06 26.0 1.2 1 23 529 551 529 551 0.98

12 13 1.3e-06 0.00011 22.6 0.8 1 23 557 579 557 579 0.96

13 13 2.9e-06 0.00024 21.5 2.0 2 23 586 608 586 608 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0031	0.25	12.0	0.6	2	20	110	128	110	130	0.93
2	13	9.1e-06	0.00075	19.9	0.6	1	23	251	274	251	274	0.98
3	13	8.8e-05	0.0073	16.8	1.9	1	23	279	301	279	301	0.98
4	13	2.6e-05	0.0021	18.5	1.1	1	19	307	325	307	328	0.95
5	13	2.3e-07	1.9e-05	24.9	0.3	1	23	339	361	339	361	0.97
6	13	0.0017	0.14	12.8	4.1	1	23	371	393	371	393	0.99
7	13	0.00013	0.011	16.3	1.3	3	23	401	421	399	421	0.98
8	13	1.4e-05	0.0011	19.4	3.5	1	23	427	449	427	449	0.98
9	13	1.7e-05	0.0014	19.1	3.1	1	23	455	477	455	477	0.94
10	13	7.4e-05	0.0062	17.1	1.2	1	23	500	523	500	523	0.95
11	13	1.1e-07	9e-06	26.0	1.2	1	23	529	551	529	551	0.98
12	13	1.3e-06	0.00011	22.6	0.8	1	23	557	579	557	579	0.96
13	13	2.9e-06	0.00024	21.5	2.0	2	23	586	608	586	608	0.96

Sequence Information

Coding Sequence: ATGGCTCCAAAAACGGGTGAGAAAGCTGTCGGAAGGGGTCGGAAAAAAGCTGCCGCGTCGACTCCGTCCAAAAGTGgTGGGAAGAAAGCTGTCGTCAAGGCAGCTCCGAAGAAAACCGCTGCCAAGGCGTCTCCGAAGAAGGGACGTCCTCCCAAAGCAGTATCCCAAGATGATTCCCCCTCTACGGGCCAAAAAACGCTGATTGATATGTGGAAGAAGAAAGTCAGTGACTCTCCAAAAGggAAAGTAACTCCTAAGAAAGATAAGGTAACCCCGAAGAAGAAAGCCGTGGCGGTTGAAAATGAAGAAGAGAAGCCGTACGAAGCAAAATGCTTCTTTTGCCCAAAGACCTTCAAAACTCTTCCTGGATTGAAAAATCACGAAGCCAAATGCAAGAAGAAGCCGAAAGCTCTGAATTTTGACGCAGCTGAAACTTCAAAAGATGGTGAAGAGAGTGCGGACGTGTCGCCAAAGGGGGTAAAGACCAAGGACGATCCTGAATCAGATCCCCCCGCCAAACCCAGCGATGaggacgaagaagaagaagatggtgAAGACGAAGGTGAAGATGACGAAAGACACAGTGGGGAAGATCTGACTAATGACGGGATGAGTGACGAAGACTCAGAGGAAGGATTCAGGATGATCAAAGGCGATCCTGACGCTGAAGACATCATGGAGAAACCTGATGAGAATGGAATGTGCCTCTGCTGCGGAGAGGACTTCGCTACTGCTCACTCCTCTGGGGAGTACCAGTGTGCGGTTTGTCAAAAGTTATTCCAGGGCAAATCGTCTCTAGAACGTCATATCAGGACGATGCATGATGGTGACAACCACACTTGTCCTCAATGCGACGCCAAGTGTCCTGATAAGGGAACTCTTGCACGTCATATGTACACTCATACtgGATTGAAACCTTATTCGTGCCCAGTTTGCAAACAAGAATTCAGCAGAAAGTATCACCTCGTGCGTCACAACATGCAAACAGGATGTGATGGCAAAGCCAAGCCTGTATTCCCTTGCCAGGTATGCGGCCGAGAGTTCAATAGGAAAGATAATTTAAGAGAACACTTGAGGGCGCATGCTGGACAAACCAAGAGGAAGAAGATGTTCACTTGCGACATTTGCAATGAAGAATTTTGTGGATCTAACATGCTTCATTTGCACCGGAAAACTCATTTAGGTGACAAGCAATATGGCTGCGATTTTTGTCCAAAGAAGTTCCAGTCAAGCGGTGCAATGAAGAAACATCGCCGTACGCACACTGGAGAAAAACCCTATGAATGTGATACATGTCACAAGTGTTTTGCTGCCAAAGAAACTCTGAATCGCCACGTACGGATTCACACCGGTTATAAACCTCACGCATGCAACTACTGCGGAAAGAGATTCATCCAAACTTCTCAGCTACGTTCTCATCTATTCTACCACACTGGGCAAGCTGGTACTGTAACCTTGGACGCCCTAGGAGGTGTAGTTATTGGACCCGTTGAGCCTTTTGCGTGCGAGCTCTGCGGAAAGAGGTTCAATCGTCGTGCACGACTAAACGAACACACCAAGTACACTCATCTGGGGGCCAAGCCCTACGAATGTCCTCATTGTTCTAAACAGTTCATCAGGAAAGAAGATTTGAACAGACACATGATCATTCACACAGGAGTTAAGGCGCATGCGTGCCCAATCTGTAGTAAATCGTTCGCTATGAAATCATCGTTGAAAGTCCACCTGTTGACTCACACGAAGGAACCGCCGAGGTCTTGCGACGAGTGCGGACGTGCCTTCATTAGGCAAGATTGTCTCCTTCGCCACATGAGAAACAAGCATAGAGATATGCTCGAAGAAATCAGGTCAGAAGCCGAGAAGAAAAAGCTGCAGCAGCAACTTTTACAAGTGGCTGCAGAAGCCAGTTTGGTCGAAGGGATGGAAGACCGGGCGGAGTTGGACGACAAAGGGCTGACCGACGCTGTTCGAGAGCTTCTCACGTTGCTCGTGGATGAAGCGACTCTACGTGGCCTGGGATGGCCTGAAGCCGGCGTCGAGTCCCTTTTAGAAGCCGTTATACGGCGATGTGGCCATGAACCAGCTCCTGGCTCCACCCCTCACCACGACCGCCTCCGTCACAACATCAAGCTTCTCTTCACCGTCGTCATCGACGACTCCGCCGTCAAAGCGCTTCTCAACAACCAAACCGTTGACGAAGTCATTCTCCACGTACTACGATTGGCCAAATCGTAG
Protein Sequence: MAPKTGEKAVGRGRKKAAASTPSKSGGKKAVVKAAPKKTAAKASPKKGRPPKAVSQDDSPSTGQKTLIDMWKKKVSDSPKGKVTPKKDKVTPKKKAVAVENEEEKPYEAKCFFCPKTFKTLPGLKNHEAKCKKKPKALNFDAAETSKDGEESADVSPKGVKTKDDPESDPPAKPSDEDEEEEDGEDEGEDDERHSGEDLTNDGMSDEDSEEGFRMIKGDPDAEDIMEKPDENGMCLCCGEDFATAHSSGEYQCAVCQKLFQGKSSLERHIRTMHDGDNHTCPQCDAKCPDKGTLARHMYTHTGLKPYSCPVCKQEFSRKYHLVRHNMQTGCDGKAKPVFPCQVCGREFNRKDNLREHLRAHAGQTKRKKMFTCDICNEEFCGSNMLHLHRKTHLGDKQYGCDFCPKKFQSSGAMKKHRRTHTGEKPYECDTCHKCFAAKETLNRHVRIHTGYKPHACNYCGKRFIQTSQLRSHLFYHTGQAGTVTLDALGGVVIGPVEPFACELCGKRFNRRARLNEHTKYTHLGAKPYECPHCSKQFIRKEDLNRHMIIHTGVKAHACPICSKSFAMKSSLKVHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRNKHRDMLEEIRSEAEKKKLQQQLLQVAAEASLVEGMEDRAELDDKGLTDAVRELLTLLVDEATLRGLGWPEAGVESLLEAVIRRCGHEPAPGSTPHHDRLRHNIKLLFTVVIDDSAVKALLNNQTVDEVILHVLRLAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00386599; iTF_01365769;
90% Identity: -
80% Identity: -