Aluc014716.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019175.2:2867562-2960107[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.4e-06 0.0002 21.8 0.8 1 23 92 114 92 114 0.97 2 17 1.6e-05 0.0013 19.1 1.6 1 23 120 142 120 142 0.96 3 17 0.00055 0.045 14.3 2.0 1 23 148 170 148 170 0.98 4 17 4.9e-05 0.0041 17.6 0.1 1 23 176 198 176 198 0.98 5 17 0.011 0.88 10.3 0.5 1 23 204 226 204 226 0.98 6 17 0.013 1.1 10.0 0.0 1 23 232 254 232 254 0.97 7 17 0.0012 0.095 13.3 0.2 1 23 260 282 260 282 0.98 8 17 0.39 32 5.4 0.0 1 21 288 308 288 309 0.92 9 17 1.2e-05 0.001 19.5 0.8 1 23 316 338 316 338 0.98 10 17 6.1e-06 0.00051 20.5 0.7 1 23 344 366 344 366 0.98 11 17 0.00039 0.033 14.8 0.7 1 23 372 394 372 394 0.98 12 17 0.00048 0.04 14.5 0.1 1 23 400 422 400 422 0.98 13 17 0.0012 0.095 13.3 0.2 1 23 428 450 428 450 0.98 14 17 0.048 3.9 8.2 0.0 1 23 456 478 456 478 0.97 15 17 1.9e-05 0.0016 18.9 0.6 1 23 484 506 484 506 0.98 16 17 5.8e-05 0.0048 17.4 0.6 1 23 512 534 512 534 0.98 17 17 0.00031 0.026 15.1 0.6 1 23 540 562 540 562 0.99
Sequence Information
- Coding Sequence
- ATGGAGGACGGAATTGCGGTGAAAGAAGAGCCgatgagtgaaggagatgaagaTCAGTTGATGGGAGAACTCGTGTTGATCGAGGAATACGTCAAAGAAGAGGTTGGTAACAGCAGGGCAGTTAAAGATGAAGATGCGGGGTGTCCGATGATCAAACAAGAGGACAGTTCAGCTGCTGACCCACTGTGTGATGAAAGTGACGTTCTGCAGGGATCTATAGGAGAACAGAGGACTGAGGCAGGACCAGCGCGTGAGTTGAAGAAGCAGAAGACTTTTGCATGTGATCGATGTGATTACAGGACCAAGAGGCCAGGAGATTTGAAGAaacacatcagaacacacactggggagaagccccacgcttgtgatagatgtgattacaggacCAAGAGGCCAGGAGATTTGAAGACTcacatcagaacacacactggggagaagccctacgcttgtgatagatgtgattacaggacCAAGTGGCAGGGACATTTGAAGATacacatgaggacacacactgaggagaagccctacgcctgtgatatatgtgattacagagcctcgcggctaGGAGGATTGAAGATgcacatcagaacacacactggggagaagccctacgcctgtgatagatgtgattacagagcctcgcggctaGGAGTATTGAAGATGCACttcagaacacacactggggagaagccctacgcctgtgatagatgtgattacagagcctcatgGCCAGGAGATTTGAAGAAACACATCgcaacacacactggggagaagctctacgcctgtgatagatgtgattacagagcctcgcggctaGGAGTATTGAAGATgcacatcagaacacacactggggagaagccctacgcctgtgatagctgtgattacagagcctcatgGCCAGGAGATTTGAAGAAACACATCGCAACACGCACTGGGGAGAAGctctacgcctgtgatagatgtgattacaggacCAAGAGGCCAGGAGATATGAAGAaacacatcagaacacacactggggagaagccctacgcttgtgatagatgtgaaTACAGGACCAAGAGGCCAGGAGATTTGAAGAaacacatcagaacacacactggggagaagccctacgcttgtgatagatgtgattacaggacCAAGTGGCAGGGACAATTGAAGATACACATGAGGACGCACACTgaggagaagccctacgcctgtgatatgtgtgattacagagcctcgcggctaGGAGTATTGAAGATgcacatcagaacacacactggggagaagccctacgcctgtgatagatgtgattacagagcctcgcggctaGGAGTATTGAAGATgcacatcagaacacacactggggagaagccctacgcctgtgatagctgtgattacagagcctcatgGCCAGGAGATTTGAAGAATCATATCgcaacacacactggggagaagcactacgcctgtgatagatgtgattacagagcctcgcggctaggaaatctgaagactcacatgaggagtcacactggggaaaagccctacgcctgtgataaatgtgattacagagcctcgcagctaggaactctgaagaagcacttgagaagtcacactggagagaagccctactcctgtgataaatgtgaatacagagcctctaagctaggagctctgaagacgcacttgaggactcacactagggggaagccctacgcctgtgatagaaggtga
- Protein Sequence
- MEDGIAVKEEPMSEGDEDQLMGELVLIEEYVKEEVGNSRAVKDEDAGCPMIKQEDSSAADPLCDESDVLQGSIGEQRTEAGPARELKKQKTFACDRCDYRTKRPGDLKKHIRTHTGEKPHACDRCDYRTKRPGDLKTHIRTHTGEKPYACDRCDYRTKWQGHLKIHMRTHTEEKPYACDICDYRASRLGGLKMHIRTHTGEKPYACDRCDYRASRLGVLKMHFRTHTGEKPYACDRCDYRASWPGDLKKHIATHTGEKLYACDRCDYRASRLGVLKMHIRTHTGEKPYACDSCDYRASWPGDLKKHIATRTGEKLYACDRCDYRTKRPGDMKKHIRTHTGEKPYACDRCEYRTKRPGDLKKHIRTHTGEKPYACDRCDYRTKWQGQLKIHMRTHTEEKPYACDMCDYRASRLGVLKMHIRTHTGEKPYACDRCDYRASRLGVLKMHIRTHTGEKPYACDSCDYRASWPGDLKNHIATHTGEKHYACDRCDYRASRLGNLKTHMRSHTGEKPYACDKCDYRASQLGTLKKHLRSHTGEKPYSCDKCEYRASKLGALKTHLRTHTRGKPYACDRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -